Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Reverse (-)

57483848 .. 57487104

Gene Structure 3257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0413000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGCTTGACAACGAGTTTTTCACCGAATACGGTGAGGCAAGTCAATATGAGATACAAGAAGTGATTGGCAAAGGTAGCTATGGTGTTGTTGCGTCTGCAGTTGATACTCACACCGGTGAGAAGGTGGCTATTAAGAAAATCAATGATGTCTTTGAGCATGTCTCTGATGCCACTCGCATTTTAAGAGAAATTAAGCTCCTTCGGCTACTGCACCACCCTGATATTGTGGACATAAAGCATATAATGCTACCCCCTTGTAGACGAGAGTTCAAGGATATATATGTTGTATTTGAGTTGATGGAATCTGACCTTCACCAAGTTATAAAGGCAAATGATGATCTCACTCCTGAGCATTATCAATTTTTCCTGTACCAGCTTCTTCGAGCTCTCAAGTATATACATACAGGAAATGTTTTCCATCGAGATTTAAAGCCAAAAAATATACTTGCTAATGCAGACTGCAAACTGAAAATCTGTGACTTTGGTCTTGCTCGTCCAGCATTTAGCGATGCCCCATCTACTGTCTTTTGGACTGACTATGTGGCAACTCGATGGTACCGTGCTCCCGAACTTTGTGGTTCCTTTTTCTCCAAGTACACTCCTGCTATTGATATTTGGAGCATAGGGTGTATATTTGCAGAAATGCTAACAGGAAAACCATTGTTTCCTGGGAAAAATGTTGTACATCAATTGGATCTCATTACTGATTTACTTGGCACTCCGTCTATCGAATCTATTGCAAGGATTCGGAACGAAAAGGCCAGAAGATATTTAAGTAATATGAAGATAAAGAAACCAACTCCTCTCTCACAAAAAATGCCTCATGCAGATCCATTGGCTCTTCGTTTACTTGAGCGTTTGCTTGCATTCGATCCTAGAGATCGTATTTCTGCTGAAGAGGCACTATCTGACCCATATTTTTATGGATTGGCAAATAAGGATAATGAACCATCCAAGCAGCCCATTTCAAAGCTTGAGTTTGATTTTGAAAAGAGGAAACTAACAAAAGATGATGTAAGAGAGCTAATTTATAGAGAGATGCTGCATGACTACCTTCAAGGTTCAGATAATATTGGCTTCATGTATCCAAGTGGAGTTGATCGATTTAGACGACAATTTGCCCATCTTGAGGAACAGTTTGGTAAAGGTGACAGAAGCACTGCACTGCAGAGGAAGCATGCTTCATTACCTAGAGAACGAGTTTGTATGGATGAGGGCACAGAGCAAAATGGCAATTCAAAAAAGGGTACCACACTCTCAGCGGGTCGTGCAGCTATTCAGAGCCCTCCAAAGTCCCAGAGGTTTGAAGTAACAGAATCTGTCTGTGAAAATGGATCAACCATACAGAATGACCTTAATAAGCCACACTATAGTCCTCATAGCCTGGTGAAGAGTGATAGCATGAGTGCTTCTCAGTGTGTCGTTGTAAATGGAAAGTACCTTGAGAAGGACAGAATGGCAGCACAGAAGAAAGAGATGATTAAAGCGGTGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

498

Amino Acids

56.92

Weight (kDa)

7.99

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	16 - 307	3.6e-66	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	17 - 226	4.6e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
Acc65I	GGTACC	2 cut(s)	555, 1247
AccB1I	GGYRCC	2 cut(s)	555, 1247
AccI	GTMKAC	1 cut(s)	259
AciI	CCGC	2 cut(s)	1262, 1487
AclWI	GGATC	4 cut(s)	702, 824, 866, 1342
AcuI	CTGAAG	1 cut(s)	915
AfaI	GTAC	6 cut(s)	371, 557, 596, 684, 1249, 1439
AfiI	CCNNNNNNNGG	2 cut(s)	1129, 1447
AgeI	ACCGGT	1 cut(s)	113
AgsI	TTSAA	6 cut(s)	271, 969, 989, 1058, 1239, 1307
AjnI	CCWGG	2 cut(s)	667, 1383
AleI	CACNNNNGTG	1 cut(s)	114
AluBI	AGCT	7 cut(s)	78, 196, 376, 386, 973, 1024, 1274
AluI	AGCT	7 cut(s)	78, 196, 376, 386, 973, 1024, 1274
Alw21I	GWGCWC	2 cut(s)	388, 565
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	4 cut(s)	702, 824, 866, 1342
AlwNI	CAGNNNCTG	1 cut(s)	1319
AoxI	GGCC	1 cut(s)	759
ApeKI	GCWGC	4 cut(s)	958, 1042, 1271, 1460
AsiGI	ACCGGT	1 cut(s)	113
Asp718I	GGTACC	2 cut(s)	555, 1247
AsuHPI	GGTGA	6 cut(s)	13, 44, 128, 305, 1160, 1399
BaeGI	GKGCMC	1 cut(s)	1220
BanI	GGYRCC	2 cut(s)	555, 1247
BanII	GRGCYC	2 cut(s)	388, 1286
Bbv12I	GWGCWC	2 cut(s)	388, 565
BbvI	GCAGC	4 cut(s)	970, 1029, 1283, 1472
BccI	CCATC	6 cut(s)	292, 426, 523, 546, 958, 1131
BcgI	CGANNNNNNTGC	2 cut(s)	719, 753
BciT130I	CCWGG	2 cut(s)	669, 1385
BciVI	GTATCC	1 cut(s)	1095
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	2 cut(s)	876, 1191
BfmI	CTRYAG	3 cut(s)	96, 1166, 1369
BfuI	GTATCC	1 cut(s)	1095
BisI	GCNGC	4 cut(s)	959, 1043, 1272, 1461
BlsI	GCNGC	4 cut(s)	960, 1044, 1273, 1462
Bme1390I	CCNGG	2 cut(s)	669, 1385
BmiI	GGNNCC	3 cut(s)	557, 580, 1249
BmrFI	CCNGG	2 cut(s)	669, 1385
BmsI	GCATC	3 cut(s)	157, 499, 1029
BoxI	GACNNNNGTC	1 cut(s)	483
BplI	GAGNNNNNCTC	4 cut(s)	146, 178, 1396, 1428
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	5 cut(s)	374, 872, 995, 1148, 1463
Bsa29I	ATCGAT	1 cut(s)	1102
BsaJI	CCNNGG	1 cut(s)	668
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	2 cut(s)	1129, 1447
Bse118I	RCCGGY	1 cut(s)	113
BseBI	CCWGG	2 cut(s)	669, 1385
BseCI	ATCGAT	1 cut(s)	1102
BseDI	CCNNGG	1 cut(s)	668
BseGI	GGATG	2 cut(s)	950, 1216
BseLI	CCNNNNNNNGG	2 cut(s)	1129, 1447
BseMII	CTCAG	3 cut(s)	339, 1272, 1427
BseRI	GAGGAG	1 cut(s)	792
BseSI	GKGCMC	1 cut(s)	1220
BseXI	GCAGC	4 cut(s)	970, 1029, 1283, 1472
BsgI	GTGCAG	3 cut(s)	194, 1146, 1290
BshFI	GGCC	1 cut(s)	761
BshNI	GGYRCC	2 cut(s)	555, 1247
BshTI	ACCGGT	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	1102
BsiHKAI	GWGCWC	2 cut(s)	388, 565
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	1279
BslI	CCNNNNNNNGG	2 cut(s)	1129, 1447
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	1279
BsmI	GAATGC	1 cut(s)	866
BsnI	GGCC	1 cut(s)	761
Bsp1286I	GDGCHC	4 cut(s)	388, 565, 1220, 1286
Bsp1407I	TGTACA	1 cut(s)	682
Bsp143I	GATC	7 cut(s)	337, 694, 829, 871, 880, 1099, 1334
BspACI	CCGC	2 cut(s)	1262, 1487
BspANI	GGCC	1 cut(s)	761
BspCNI	CTCAG	3 cut(s)	340, 1271, 1426
BspDI	ATCGAT	1 cut(s)	1102
BspLI	GGNNCC	3 cut(s)	557, 580, 1249
BspMAI	CTGCAG	2 cut(s)	100, 1170
BspPI	GGATC	4 cut(s)	702, 824, 866, 1342
BspQI	GCTCTTC	1 cut(s)	846
BspT107I	GGYRCC	2 cut(s)	555, 1247
BsrFI	RCCGGY	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	682
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	668
BssMI	GATC	7 cut(s)	337, 694, 829, 871, 880, 1099, 1334
Bst2UI	CCWGG	2 cut(s)	669, 1385
Bst4CI	ACNGT	4 cut(s)	32, 523, 560, 1137
Bst6I	CTCTTC	3 cut(s)	846, 891, 1385
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstAUI	TGTACA	1 cut(s)	682
BstC8I	GCNNGC	2 cut(s)	864, 1179
BstDEI	CTNAG	3 cut(s)	348, 1258, 1413
BstENI	CCTNNNNNAGG	1 cut(s)	1445
BstF5I	GGATG	2 cut(s)	950, 1216
BstKTI	GATC	7 cut(s)	340, 697, 832, 874, 883, 1102, 1337
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	7 cut(s)	337, 694, 829, 871, 880, 1099, 1334
BstMWI	GCNNNNNNNGC	7 cut(s)	75, 202, 244, 497, 899, 1174, 1268
BstNI	CCWGG	2 cut(s)	669, 1385
BstNSI	RCATGY	2 cut(s)	161, 1181
BstPAI	GACNNNNGTC	1 cut(s)	483
BstSCI	CCNGG	2 cut(s)	667, 1383
BstSFI	CTRYAG	3 cut(s)	96, 1166, 1369
BstSLI	GKGCMC	1 cut(s)	1220
BstV1I	GCAGC	4 cut(s)	970, 1029, 1283, 1472
BstX2I	RGATCY	2 cut(s)	694, 829
BstYI	RGATCY	2 cut(s)	694, 829
Bsu15I	ATCGAT	1 cut(s)	1102
BsuI	GTATCC	1 cut(s)	1095
BsuRI	GGCC	1 cut(s)	761
BsuTUI	ATCGAT	1 cut(s)	1102
BtgZI	GCGATG	1 cut(s)	522
BtsCI	GGATG	2 cut(s)	950, 1216
BtsI	GCAGTG	2 cut(s)	1158, 1163
BtsIMutI	CAGTG	3 cut(s)	1158, 1163, 1421
Cac8I	GCNNGC	2 cut(s)	864, 1179
CaiI	CAGNNNCTG	1 cut(s)	1319
Cfr10I	RCCGGY	1 cut(s)	113
ClaI	ATCGAT	1 cut(s)	1102
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	6 cut(s)	370, 556, 595, 683, 1248, 1438
CspAI	ACCGGT	1 cut(s)	113
CviAII	CATG	6 cut(s)	158, 824, 1046, 1081, 1178, 1402
CviQI	GTAC	6 cut(s)	370, 556, 595, 683, 1248, 1438
DdeI	CTNAG	3 cut(s)	348, 1258, 1413
DpnI	GATC	7 cut(s)	339, 696, 831, 873, 882, 1101, 1336
DpnII	GATC	7 cut(s)	337, 694, 829, 871, 880, 1099, 1334
DraI	TTTAAA	1 cut(s)	429
Eam1104I	CTCTTC	3 cut(s)	846, 891, 1385
EarI	CTCTTC	3 cut(s)	846, 891, 1385
Ecl136II	GAGCTC	1 cut(s)	386
Eco24I	GRGCYC	2 cut(s)	388, 1286
Eco53kI	GAGCTC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	915
EcoICRI	GAGCTC	1 cut(s)	386
EcoNI	CCTNNNNNAGG	1 cut(s)	1445
EcoRII	CCWGG	2 cut(s)	667, 1383
EcoT38I	GRGCYC	2 cut(s)	388, 1286
FaeI	CATG	6 cut(s)	161, 827, 1049, 1084, 1181, 1405
FaqI	GGGAC	1 cut(s)	1279
FatI	CATG	6 cut(s)	157, 823, 1045, 1080, 1177, 1401
FauI	CCCGC	1 cut(s)	1255
FblI	GTMKAC	1 cut(s)	259
Fnu4HI	GCNGC	4 cut(s)	959, 1043, 1272, 1461
FokI	GGATG	2 cut(s)	937, 1223
FriOI	GRGCYC	2 cut(s)	388, 1286
Fsp4HI	GCNGC	4 cut(s)	959, 1043, 1272, 1461
FspBI	CTAG	2 cut(s)	876, 1191
GluI	GCNGC	4 cut(s)	959, 1043, 1272, 1461
HaeIII	GGCC	1 cut(s)	761
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	81
Hin1II	CATG	6 cut(s)	161, 827, 1049, 1084, 1181, 1405
HindIII	AAGCTT	1 cut(s)	971
HinfI	GANTC	4 cut(s)	302, 731, 745, 1316
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	6 cut(s)	13, 44, 128, 305, 1160, 1399
Hpy166II	GTNNAC	4 cut(s)	229, 260, 597, 848
Hpy188I	TCNGA	6 cut(s)	166, 307, 750, 910, 1066, 1281
Hpy188III	TCNNGA	4 cut(s)	347, 422, 566, 1127
Hpy8I	GTNNAC	4 cut(s)	229, 260, 597, 848
HpyAV	CCTTC	5 cut(s)	115, 209, 320, 1064, 1441
HpyCH4III	ACNGT	4 cut(s)	32, 523, 560, 1137
HpyF10VI	GCNNNNNNNGC	7 cut(s)	75, 202, 244, 497, 899, 1174, 1268
HpyF3I	CTNAG	3 cut(s)	348, 1258, 1413
Hsp92II	CATG	6 cut(s)	161, 827, 1049, 1084, 1181, 1405
KpnI	GGTACC	2 cut(s)	559, 1251
Kzo9I	GATC	7 cut(s)	337, 694, 829, 871, 880, 1099, 1334
LguI	GCTCTTC	1 cut(s)	846
LmnI	GCTCC	3 cut(s)	201, 568, 618
Lsp1109I	GCAGC	4 cut(s)	970, 1029, 1283, 1472
LweI	GCATC	3 cut(s)	157, 499, 1029
MaeI	CTAG	2 cut(s)	876, 1191
MaeIII	GTNAC	3 cut(s)	476, 1148, 1309
MalI	GATC	7 cut(s)	339, 696, 831, 873, 882, 1101, 1336
MboI	GATC	7 cut(s)	337, 694, 829, 871, 880, 1099, 1334
MboII	GAAGA	7 cut(s)	371, 777, 796, 833, 908, 1402, 1480
MfeI	CAATTG	1 cut(s)	689
MflI	RGATCY	2 cut(s)	694, 829
MhlI	GDGCHC	4 cut(s)	388, 565, 1220, 1286
MluCI	AATT	6 cut(s)	189, 359, 689, 1026, 1115, 1234
MseI	TTAA	7 cut(s)	132, 182, 192, 428, 773, 1356, 1482
MslI	CAYNNNNRTG	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	1262
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	2 cut(s)	669, 1385
MunI	CAATTG	1 cut(s)	689
Mva1269I	GAATGC	1 cut(s)	866
MvaI	CCWGG	2 cut(s)	669, 1385
MwoI	GCNNNNNNNGC	7 cut(s)	75, 202, 244, 497, 899, 1174, 1268
NdeII	GATC	7 cut(s)	337, 694, 829, 871, 880, 1099, 1334
NlaIII	CATG	6 cut(s)	161, 827, 1049, 1084, 1181, 1405
NlaIV	GGNNCC	3 cut(s)	557, 580, 1249
NmuCI	GTSAC	2 cut(s)	476, 1148
NspI	RCATGY	2 cut(s)	161, 1181
OliI	CACNNNNGTG	1 cut(s)	114
PaeI	GCATGC	1 cut(s)	1181
PciSI	GCTCTTC	1 cut(s)	846
PcsI	WCGNNNNNNNCGW	2 cut(s)	556, 1108
PctI	GAATGC	1 cut(s)	866
PfeI	GAWTC	4 cut(s)	302, 731, 745, 1316
PinAI	ACCGGT	1 cut(s)	113
PkrI	GCNGC	4 cut(s)	960, 1044, 1273, 1462
PshAI	GACNNNNGTC	1 cut(s)	483
PsiI	TTATAA	1 cut(s)	323
Psp124BI	GAGCTC	1 cut(s)	388
Psp6I	CCWGG	2 cut(s)	667, 1383
PspGI	CCWGG	2 cut(s)	667, 1383
PspN4I	GGNNCC	3 cut(s)	557, 580, 1249
PstI	CTGCAG	2 cut(s)	100, 1170
PstNI	CAGNNNCTG	1 cut(s)	1319
PsuI	RGATCY	2 cut(s)	694, 829
RsaI	GTAC	6 cut(s)	371, 557, 596, 684, 1249, 1439
RsaNI	GTAC	6 cut(s)	370, 556, 595, 683, 1248, 1438
RseI	CAYNNNNRTG	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	388
SapI	GCTCTTC	1 cut(s)	846
SaqAI	TTAA	7 cut(s)	132, 182, 192, 428, 773, 1356, 1482
SatI	GCNGC	4 cut(s)	959, 1043, 1272, 1461
Sau3AI	GATC	7 cut(s)	337, 694, 829, 871, 880, 1099, 1334
ScrFI	CCNGG	2 cut(s)	669, 1385
SduI	GDGCHC	4 cut(s)	388, 565, 1220, 1286
SfaNI	GCATC	3 cut(s)	157, 499, 1029
SfcI	CTRYAG	3 cut(s)	96, 1166, 1369
SgrAI	CRCCGGYG	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	5 cut(s)	389, 851, 974, 1127, 1442
SmoI	CTYRAG	5 cut(s)	389, 851, 974, 1127, 1442
SphI	GCATGC	1 cut(s)	1181
Sse9I	AATT	6 cut(s)	189, 359, 689, 1026, 1115, 1234
SsiI	CCGC	2 cut(s)	1262, 1487
SspI	AATATT	1 cut(s)	1072
SspMI	CTAG	2 cut(s)	876, 1191
SstI	GAGCTC	1 cut(s)	388
StyD4I	CCNGG	2 cut(s)	667, 1383
TaaI	ACNGT	4 cut(s)	32, 523, 560, 1137
TaqI	TCGA	6 cut(s)	382, 421, 550, 729, 870, 1102
TasI	AATT	6 cut(s)	189, 359, 689, 1026, 1115, 1234
TatI	WGTACW	2 cut(s)	594, 682
TfiI	GAWTC	4 cut(s)	302, 731, 745, 1316
Tru1I	TTAA	7 cut(s)	132, 182, 192, 428, 773, 1356, 1482
Tru9I	TTAA	7 cut(s)	132, 182, 192, 428, 773, 1356, 1482
TscAI	CASTG	3 cut(s)	1165, 1170, 1421
TseFI	GTSAC	2 cut(s)	476, 1148
TseI	GCWGC	4 cut(s)	958, 1042, 1271, 1460
Tsp45I	GTSAC	2 cut(s)	476, 1148
TspDTI	ATGAA	4 cut(s)	797, 960, 1069, 1173
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	3 cut(s)	1165, 1170, 1421
XagI	CCTNNNNNAGG	1 cut(s)	1445
XceI	RCATGY	2 cut(s)	161, 1181
XmiI	GTMKAC	1 cut(s)	259
XspI	CTAG	2 cut(s)	876, 1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.