Rmu_sc0003758.1_g000015

(E,E)-alpha-farnesene

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003758.1
Physical Location & Seq
Forward (+)
55384 .. 58957
3574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003758.1_g000015.1.cds

Sequence Viewer

Length: 1743 bp
atggattggggtatgcacctgcataaccatcgagctgatgagcaacagatactgcaatggcagacgaaatccgaacccccttccttggtacatgatcaaagacgatctgccaattacaagccgaatatttggaagtatgatttccttgaatctcttaacagcaaatttgatggagaatgttatcaaattcagattcagaagctaatagaagatgttaaggatttgtttggtgaatgtaaggaattgggtttactagctaagttggagctgattgacagcatccaaaaactaggcctgaacaactactttgagaaggaaatcaaggaaaccctagacaccatagcatctgtggaactgaaaaacaacaacaatcccttcattggttcagatggtgatctctatgctacgacacttctctttaagattcttaggcagcatggttataaagtttcacaagatatacttggtgttttcatggatgaaattggtgcattaaagaagagcacatttggggatgtgaaaggaatgctcgaacttttggaggcctcaaacttagctttagaaggtgaaaatatcctagatgaggctaaagctttcttaatggccactctcagagataccaataccttgtgtgatgatatagacggttgcatttccaagcatgtggcctatgccttgaagctttcatcacaaaggagagtccagtggtttaatgtgaaatggcacatcaaagcctacgaggaaaacaatacgaagcaagccaacatgaccactttacttgagctggcgaaacttaacttcaacatggttcaagccacactccaaaaagatctaagggaagcatccaagtggtggaacaatctgggtctctcaaagaacttggactttgcaagagacagaatggtcgaatgtttcatgtgtgccgtgggattagctttcgagcctgagtataagtcctttagaaaatggataactaaagtcgtcaatttgattctcatcatcgatgatgtttatgatgtttatggctcattggaagagctaaaacatttcaccaatgctattgaaaggtgggatgttagggaaattgagcagcttcctgagtgtatgaagatctgtttccaagtactttacaacacgacttgtgaaattgcttatgaaatcgagaaggacaagggttggaaccaagtattacctcatctgcacaaagtgtgggcagatttttctagagcgttattggtggaggcagagtggtacaataaggcctacacaccgtcctttgaagagtaccttagcaatggttggatttcatcatctgcttcgctgattttcactcatgcactcttcgccacagcacatgaggagagaatggatgattttttgcacaagaatgaagatttagtgtacaatatctctctgatacttcgactcttaaatgatctgggaacttctgcggccgagcaagagagaggcgatgctgcttcatcaatcctatgctacatgagagaagtgaatgcttcagaagaaagagctcgaaagcacatcaaaggcatgatagacaatgcatggaagaaaataaatgaaaaatgcttcactcaagtgcttgaaatttcttcattcatcaacattaccacaaatatagctcgagttggtcacagcctttatcaagatggagatggatttggtgatcaagagcaagggtctcggggacagatccaatctttactagttgaaccgctctcttaa

Protein Analysis

580

Amino Acids

66.88

Weight (kDa)

5.19

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AarI CACCTGC 1 cut(s) 27
AasI GACNNNNNNGTC 1 cut(s) 902
Acc36I ACCTGC 1 cut(s) 27
AccB7I CCANNNNNTGG 1 cut(s) 852
AccBSI CCGCTC 1 cut(s) 1735
AciI CCGC 2 cut(s) 1451, 1733
AclWI GGATC 1 cut(s) 1705
AcoI YGGCCR 2 cut(s) 603, 1452
AcsI RAATTY 3 cut(s) 164, 186, 1605
AcuI CTGAAG 1 cut(s) 1500
AdeI CACNNNGTG 1 cut(s) 1207
AfaI GTAC 5 cut(s) 90, 1125, 1253, 1286, 1403
AfiI CCNNNNNNNGG 4 cut(s) 85, 380, 583, 852
AgsI TTSAA 8 cut(s) 149, 679, 802, 812, 1064, 1280, 1604, 1730
AhlI ACTAGT 1 cut(s) 1723
AleI CACNNNNGTG 1 cut(s) 1595
Alw21I GWGCWC 2 cut(s) 506, 1531
Alw26I GTCTC 3 cut(s) 872, 888, 1704
AlwI GGATC 1 cut(s) 1705
AlwNI CAGNNNCTG 1 cut(s) 52
Ama87I CYCGRG 2 cut(s) 1641, 1701
AoxI GGCC 6 cut(s) 292, 543, 603, 666, 1260, 1452
ApeKI GCWGC 3 cut(s) 433, 1090, 1475
ApoI RAATTY 3 cut(s) 164, 186, 1605
AsuHPI GGTGA 5 cut(s) 242, 404, 578, 1042, 1694
AvaI CYCGRG 2 cut(s) 1641, 1701
BalI TGGCCA 1 cut(s) 605
BanII GRGCYC 1 cut(s) 1531
Bbv12I GWGCWC 2 cut(s) 506, 1531
BbvI GCAGC 3 cut(s) 445, 1102, 1462
BccI CCATC 5 cut(s) 36, 164, 383, 1661, 1667
BceAI ACGGC 1 cut(s) 908
BcgI CGANNNNNNTGC 4 cut(s) 11, 45, 1682, 1716
BclI TGATCA 2 cut(s) 94, 1684
BcoDI GTCTC 3 cut(s) 872, 888, 1704
BcuI ACTAGT 1 cut(s) 1723
BfaI CTAG 6 cut(s) 254, 290, 332, 578, 1224, 1724
BfuAI ACCTGC 1 cut(s) 27
BglII AGATCT 2 cut(s) 829, 1110
BisI GCNGC 4 cut(s) 434, 1091, 1452, 1476
BlsI GCNGC 4 cut(s) 435, 1092, 1453, 1477
BmcAI AGTACT 1 cut(s) 1125
BmeT110I CYCGRG 2 cut(s) 1641, 1701
BmiI GGNNCC 1 cut(s) 1181
BmsI GCATC 4 cut(s) 288, 353, 851, 1462
Bpu10I CCTNAGC 1 cut(s) 1289
BpuEI CTTGAG 2 cut(s) 800, 1578
Bsa29I ATCGAT 1 cut(s) 1002
BsaBI GATNNNNATC 2 cut(s) 393, 995
BsaI GGTCTC 2 cut(s) 872, 1704
BsaJI CCNNGG 2 cut(s) 84, 924
BsaXI ACNNNNNCTCC 2 cut(s) 1232, 1262
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 380, 583, 852
Bse1I ACTGG 1 cut(s) 703
Bse3DI GCAATG 2 cut(s) 62, 1300
Bse8I GATNNNNATC 2 cut(s) 393, 995
BseCI ATCGAT 1 cut(s) 1002
BseDI CCNNGG 2 cut(s) 84, 924
BseGI GGATG 6 cut(s) 279, 484, 520, 842, 1078, 1375
BseJI GATNNNNATC 2 cut(s) 393, 995
BseLI CCNNNNNNNGG 4 cut(s) 85, 380, 583, 852
BseMI GCAATG 2 cut(s) 62, 1300
BseMII CTCAG 3 cut(s) 625, 936, 1089
BseNI ACTGG 1 cut(s) 703
BseRI GAGGAG 1 cut(s) 1373
BseX3I CGGCCG 1 cut(s) 1452
BseXI GCAGC 3 cut(s) 445, 1102, 1462
BsgI GTGCAG 1 cut(s) 1184
Bsh1285I CGRYCG 1 cut(s) 1455
BshFI GGCC 6 cut(s) 294, 545, 605, 668, 1262, 1454
BshVI ATCGAT 1 cut(s) 1002
BsiEI CGRYCG 1 cut(s) 1455
BsiHKAI GWGCWC 2 cut(s) 506, 1531
BsiHKCI CYCGRG 2 cut(s) 1641, 1701
BslFI GGGAC 1 cut(s) 1719
BslI CCNNNNNNNGG 4 cut(s) 85, 380, 583, 852
BsmAI GTCTC 3 cut(s) 872, 888, 1704
BsmFI GGGAC 1 cut(s) 1719
BsmI GAATGC 2 cut(s) 531, 1516
BsnI GGCC 6 cut(s) 294, 545, 605, 668, 1262, 1454
Bso31I GGTCTC 2 cut(s) 872, 1704
BsoBI CYCGRG 2 cut(s) 1641, 1701
Bsp1286I GDGCHC 2 cut(s) 506, 1531
Bsp1407I TGTACA 1 cut(s) 1401
Bsp143I GATC 8 cut(s) 94, 104, 394, 829, 1110, 1435, 1684, 1710
BspACI CCGC 2 cut(s) 1451, 1733
BspANI GGCC 6 cut(s) 294, 545, 605, 668, 1262, 1454
BspCNI CTCAG 3 cut(s) 624, 937, 1090
BspDI ATCGAT 1 cut(s) 1002
BspLI GGNNCC 1 cut(s) 1181
BspMI ACCTGC 1 cut(s) 27
BspPI GGATC 1 cut(s) 1705
BspQI GCTCTTC 2 cut(s) 494, 1029
BspTNI GGTCTC 2 cut(s) 872, 1704
BsrBI CCGCTC 1 cut(s) 1735
BsrDI GCAATG 2 cut(s) 62, 1300
BsrGI TGTACA 1 cut(s) 1401
BsrI ACTGG 1 cut(s) 703
BssECI CCNNGG 2 cut(s) 84, 924
BssMI GATC 8 cut(s) 94, 104, 394, 829, 1110, 1435, 1684, 1710
BssT1I CCWWGG 1 cut(s) 84
Bst4CI ACNGT 2 cut(s) 647, 1272
Bst6I CTCTTC 4 cut(s) 494, 1029, 1275, 1346
BstAUI TGTACA 1 cut(s) 1401
BstC8I GCNNGC 2 cut(s) 759, 786
BstDEI CTNAG 8 cut(s) 258, 428, 553, 611, 833, 945, 1098, 1289
BstDSI CCRYGG 1 cut(s) 924
BstENI CCTNNNNNAGG 1 cut(s) 581
BstF5I GGATG 6 cut(s) 279, 484, 520, 842, 1078, 1375
BstKTI GATC 8 cut(s) 97, 107, 397, 832, 1113, 1438, 1687, 1713
BstMAI GTCTC 3 cut(s) 872, 888, 1704
BstMBI GATC 8 cut(s) 94, 104, 394, 829, 1110, 1435, 1684, 1710
BstMCI CGRYCG 1 cut(s) 1455
BstMWI GCNNNNNNNGC 1 cut(s) 1343
BstNSI RCATGY 1 cut(s) 665
BstV1I GCAGC 3 cut(s) 445, 1102, 1462
BstX2I RGATCY 3 cut(s) 829, 1110, 1710
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 3 cut(s) 829, 1110, 1710
BstZI CGGCCG 1 cut(s) 1452
Bsu15I ATCGAT 1 cut(s) 1002
BsuRI GGCC 6 cut(s) 294, 545, 605, 668, 1262, 1454
BsuTUI ATCGAT 1 cut(s) 1002
BtgI CCRYGG 1 cut(s) 924
BtgZI GCGATG 1 cut(s) 1485
BtsCI GGATG 6 cut(s) 279, 484, 520, 842, 1078, 1375
BtsIMutI CAGTG 1 cut(s) 710
BveI ACCTGC 1 cut(s) 27
Cac8I GCNNGC 2 cut(s) 759, 786
CaiI CAGNNNCTG 1 cut(s) 52
ClaI ATCGAT 1 cut(s) 1002
Csp6I GTAC 5 cut(s) 89, 1124, 1252, 1285, 1402
CspCI CAANNNNNGTGG 2 cut(s) 760, 795
CviQI GTAC 5 cut(s) 89, 1124, 1252, 1285, 1402
DdeI CTNAG 8 cut(s) 258, 428, 553, 611, 833, 945, 1098, 1289
DpnI GATC 8 cut(s) 96, 106, 396, 831, 1112, 1437, 1686, 1712
DpnII GATC 8 cut(s) 94, 104, 394, 829, 1110, 1435, 1684, 1710
DraIII CACNNNGTG 1 cut(s) 1207
DrdI GACNNNNNNGTC 1 cut(s) 902
DseDI GACNNNNNNGTC 1 cut(s) 902
EaeI YGGCCR 2 cut(s) 603, 1452
EagI CGGCCG 1 cut(s) 1452
Eam1104I CTCTTC 4 cut(s) 494, 1029, 1275, 1346
EarI CTCTTC 4 cut(s) 494, 1029, 1275, 1346
Ecl136II GAGCTC 1 cut(s) 1529
EclXI CGGCCG 1 cut(s) 1452
Eco130I CCWWGG 1 cut(s) 84
Eco147I AGGCCT 3 cut(s) 294, 545, 1262
Eco24I GRGCYC 1 cut(s) 1531
Eco31I GGTCTC 2 cut(s) 872, 1704
Eco52I CGGCCG 1 cut(s) 1452
Eco53kI GAGCTC 1 cut(s) 1529
Eco57I CTGAAG 1 cut(s) 1500
Eco88I CYCGRG 2 cut(s) 1641, 1701
EcoICRI GAGCTC 1 cut(s) 1529
EcoNI CCTNNNNNAGG 1 cut(s) 581
EcoT14I CCWWGG 1 cut(s) 84
EcoT22I ATGCAT 1 cut(s) 1564
EcoT38I GRGCYC 1 cut(s) 1531
ErhI CCWWGG 1 cut(s) 84
FalI AAGNNNNNCTT 4 cut(s) 447, 479, 1272, 1304
FaqI GGGAC 1 cut(s) 1719
FbaI TGATCA 2 cut(s) 94, 1684
Fnu4HI GCNGC 4 cut(s) 434, 1091, 1452, 1476
FokI GGATG 6 cut(s) 266, 491, 527, 829, 1085, 1382
FriOI GRGCYC 1 cut(s) 1531
Fsp4HI GCNGC 4 cut(s) 434, 1091, 1452, 1476
FspBI CTAG 6 cut(s) 254, 290, 332, 578, 1224, 1724
GluI GCNGC 4 cut(s) 434, 1091, 1452, 1476
HaeIII GGCC 6 cut(s) 294, 545, 605, 668, 1262, 1454
HindIII AAGCTT 2 cut(s) 591, 680
HinfI GANTC 6 cut(s) 149, 193, 424, 699, 991, 1425
HphI GGTGA 5 cut(s) 242, 404, 578, 1042, 1694
Hpy166II GTNNAC 2 cut(s) 251, 1402
Hpy188I TCNGA 7 cut(s) 73, 192, 198, 388, 614, 1416, 1519
Hpy188III TCNNGA 5 cut(s) 1097, 1162, 1224, 1664, 1688
Hpy8I GTNNAC 2 cut(s) 251, 1402
HpyAV CCTTC 5 cut(s) 90, 307, 385, 557, 1159
HpyCH4III ACNGT 2 cut(s) 647, 1272
HpyF10VI GCNNNNNNNGC 1 cut(s) 1343
HpyF3I CTNAG 8 cut(s) 258, 428, 553, 611, 833, 945, 1098, 1289
Ksp22I TGATCA 2 cut(s) 94, 1684
Kzo9I GATC 8 cut(s) 94, 104, 394, 829, 1110, 1435, 1684, 1710
LguI GCTCTTC 2 cut(s) 494, 1029
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 8 cut(s) 32, 308, 716, 770, 848, 957, 1110, 1424
Lsp1109I GCAGC 3 cut(s) 445, 1102, 1462
LweI GCATC 4 cut(s) 288, 353, 851, 1462
MaeI CTAG 6 cut(s) 254, 290, 332, 578, 1224, 1724
MaeIII GTNAC 1 cut(s) 1649
MalI GATC 8 cut(s) 96, 106, 396, 831, 1112, 1437, 1686, 1712
MbiI CCGCTC 1 cut(s) 1735
MboI GATC 8 cut(s) 94, 104, 394, 829, 1110, 1435, 1684, 1710
MflI RGATCY 3 cut(s) 829, 1110, 1710
MhlI GDGCHC 2 cut(s) 506, 1531
MlsI TGGCCA 1 cut(s) 605
MluCI AATT 9 cut(s) 112, 164, 186, 242, 483, 985, 1083, 1146, 1605
MluNI TGGCCA 1 cut(s) 605
MlyI GAGTC 2 cut(s) 708, 1419
MmeI TCCRAC 3 cut(s) 243, 1157, 1280
MnlI CCTC 8 cut(s) 535, 556, 577, 733, 1203, 1234, 1351, 1460
Mox20I TGGCCA 1 cut(s) 605
Mph1103I ATGCAT 1 cut(s) 1564
MscI TGGCCA 1 cut(s) 605
MseI TTAA 9 cut(s) 156, 216, 420, 494, 599, 711, 795, 1430, 1741
MslI CAYNNNNRTG 3 cut(s) 847, 1386, 1595
Msp20I TGGCCA 1 cut(s) 605
Mva1269I GAATGC 2 cut(s) 531, 1516
MwoI GCNNNNNNNGC 1 cut(s) 1343
NdeII GATC 8 cut(s) 94, 104, 394, 829, 1110, 1435, 1684, 1710
NlaIV GGNNCC 1 cut(s) 1181
NmeAIII GCCGAG 1 cut(s) 1480
NmuCI GTSAC 1 cut(s) 1649
NsiI ATGCAT 1 cut(s) 1564
NspI RCATGY 1 cut(s) 665
OliI CACNNNNGTG 1 cut(s) 1595
PaeR7I CTCGAG 1 cut(s) 1641
PaqCI CACCTGC 1 cut(s) 27
PceI AGGCCT 3 cut(s) 294, 545, 1262
PciSI GCTCTTC 2 cut(s) 494, 1029
PctI GAATGC 2 cut(s) 531, 1516
PfeI GAWTC 4 cut(s) 149, 193, 424, 991
PflMI CCANNNNNTGG 1 cut(s) 852
PkrI GCNGC 4 cut(s) 435, 1092, 1453, 1477
PleI GAGTC 2 cut(s) 707, 1419
PpsI GAGTC 2 cut(s) 707, 1419
PsiI TTATAA 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 1531
PspN4I GGNNCC 1 cut(s) 1181
PspXI VCTCGAGB 1 cut(s) 1641
PstNI CAGNNNCTG 1 cut(s) 52
PsuI RGATCY 3 cut(s) 829, 1110, 1710
RsaI GTAC 5 cut(s) 90, 1125, 1253, 1286, 1403
RsaNI GTAC 5 cut(s) 89, 1124, 1252, 1285, 1402
RseI CAYNNNNRTG 3 cut(s) 847, 1386, 1595
SacI GAGCTC 1 cut(s) 1531
SapI GCTCTTC 2 cut(s) 494, 1029
SaqAI TTAA 9 cut(s) 156, 216, 420, 494, 599, 711, 795, 1430, 1741
SatI GCNGC 4 cut(s) 434, 1091, 1452, 1476
Sau3AI GATC 8 cut(s) 94, 104, 394, 829, 1110, 1435, 1684, 1710
ScaI AGTACT 1 cut(s) 1125
SchI GAGTC 2 cut(s) 708, 1419
SduI GDGCHC 2 cut(s) 506, 1531
SfaNI GCATC 4 cut(s) 288, 353, 851, 1462
Sfr274I CTCGAG 1 cut(s) 1641
SlaI CTCGAG 1 cut(s) 1641
SmiMI CAYNNNNRTG 3 cut(s) 847, 1386, 1595
SmlI CTYRAG 3 cut(s) 779, 1593, 1641
SmoI CTYRAG 3 cut(s) 779, 1593, 1641
SpeI ACTAGT 1 cut(s) 1723
Sse9I AATT 9 cut(s) 112, 164, 186, 242, 483, 985, 1083, 1146, 1605
SseBI AGGCCT 3 cut(s) 294, 545, 1262
SsiI CCGC 2 cut(s) 1451, 1733
SspI AATATT 1 cut(s) 127
SspMI CTAG 6 cut(s) 254, 290, 332, 578, 1224, 1724
SstI GAGCTC 1 cut(s) 1531
StuI AGGCCT 3 cut(s) 294, 545, 1262
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 647, 1272
TaqI TCGA 9 cut(s) 31, 531, 906, 939, 1002, 1161, 1423, 1531, 1642
TasI AATT 9 cut(s) 112, 164, 186, 242, 483, 985, 1083, 1146, 1605
TatI WGTACW 2 cut(s) 1123, 1401
TauI GCSGC 1 cut(s) 1454
TfiI GAWTC 4 cut(s) 149, 193, 424, 991
Tru1I TTAA 9 cut(s) 156, 216, 420, 494, 599, 711, 795, 1430, 1741
Tru9I TTAA 9 cut(s) 156, 216, 420, 494, 599, 711, 795, 1430, 1741
TscAI CASTG 1 cut(s) 710
TseFI GTSAC 1 cut(s) 1649
TseI GCWGC 3 cut(s) 433, 1090, 1475
Tsp45I GTSAC 1 cut(s) 1649
TspRI CASTG 1 cut(s) 710
Van91I CCANNNNNTGG 1 cut(s) 852
XagI CCTNNNNNAGG 1 cut(s) 581
XapI RAATTY 3 cut(s) 164, 186, 1605
XbaI TCTAGA 1 cut(s) 1223
XceI RCATGY 1 cut(s) 665
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 1641
XspI CTAG 6 cut(s) 254, 290, 332, 578, 1224, 1724
ZrmI AGTACT 1 cut(s) 1125
Zsp2I ATGCAT 1 cut(s) 1564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.