Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002039

Physical Location & Seq

Genomic Coordinates Forward (+)

6943517 .. 6944703

Gene Structure 1187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G126400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGACCGATATTTCCGATATCATCGATATTTTAGACCTTGGTGCTGTGGGATTAAATTTCCAGCCTGACTACACATCTTTCAGTATACGGCTTACTAAAGTCATCTACTTGATTCTGATAATAGATGACGTTTATGACCTCTATGCCTCACTGGAAGTGCTAAAGCTCTTCACCAACGCTGTCGATCGGTGGGATGTTGGGGAAACGGGGCAGCTTCCAGATTGTATGAAGATCTGTTTCCAAGTGCTCTACAACACTACTTGTGAAATTGCTCATGAAATTGAGGAGGAGAATGGCTGGAACCTAGTGTTACCTCATTTGAGCAAAGTGTGGGCAGATTTCTGTAAAGCATTACTATTGGAGGCAGAGTGGTACAGTAGCGGCTATATACCATCCCTTGAAGAATACCTAAGTAATGGATGCATTTCATCATCAGCTTCAGTCCTTTTGGTTCATACATTTTTCTCCACAACTCATCGTGATCAGCCAACCGAAGAGATTGCCGATTTTTGGCACAAGAATGAAGATTTTGTGAATAACATATCTCTGATAGTTCGGCTCACCAATGATTTGGCAACTTACCAGGCTGAACAAGAGAGAGGCGATGCTCCTTCAGCAATCCTATGTTACATGCGAGAGATGAATGTTTCTGAAGATATAGCCGAGACGAAGATTATAGGCATGATAGACAAAGCGTGGAAGAAAATAAACGGGAAATGCTTGAGAACCCCACAAGTTCCTTTCCTCTCACCATTCATCAACTTGCCACAAATATTGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

261

Amino Acids

29.66

Weight (kDa)

4.49

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002039)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03000
malus_domestica	MD10G1311000.v1.1
prunus_persica	Prupe.4G029900_v2.0.a1 Prupe.4G125200_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125300_v2.0.a1 Prupe.4G125500_v2.0.a1 Prupe.4G126400_v2.0.a1 Prupe.4G126600_v2.0.a1 Prupe.4G126600_v2.0.a1
pyrus_communis	pycom10g26190
rosa_chinensis	RchiOBHm_Chr1g0331201 RchiOBHm_Chr1g0331211 RchiOBHm_Chr5g0004591 RchiOBHm_Chr5g0004631 RchiOBHm_Chr5g0029171 RchiOBHm_Chr5g0029181 RchiOBHm_Chr5g0029221 RchiOBHm_Chr5g0029231
rosa_laevigata	RLG00000031243 RLG00000031247 RLG00000031248
rosa_multiflora	Rmu_sc0003758.1_g000015 Rmu_sc0005711.1_g000009 Rmu_sc0012347.1_g000002
rosa_roxburghii	Rroxscaffold_1G00070900 Rroxscaffold_1G00070960
rosa_rugosa	Rorug04G0412300 Rorug04G0412700 Rorug04G0412800 Rorug04G0412900 Rorug04G0413000
rosa_samantha	Rh1AG116200 Rh1DG120600 Rh5AG040400 Rh5BG039900 Rh5CG043700 Rh5CG044200 Rh5CG224800 Rh5DG039500 Rh5DG039600 Rh5DG040200
rosa_wichuraiana	Rw1G009340 Rw5G003880 Rw5G003920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	85
AciI	CCGC	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	55
AcuI	CTGAAG	3 cut(s)	423, 597, 672
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	510
AgsI	TTSAA	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	582
AluBI	AGCT	3 cut(s)	166, 214, 437
AluI	AGCT	3 cut(s)	166, 214, 437
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	659
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	780
AsuHPI	GGTGA	3 cut(s)	163, 553, 741
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	1 cut(s)	400
BceAI	ACGGC	1 cut(s)	104
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BciT130I	CCWGG	1 cut(s)	584
BclI	TGATCA	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	1 cut(s)	305
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	2 cut(s)	212, 382
BlsI	GCNGC	2 cut(s)	213, 383
Bme1390I	CCNGG	1 cut(s)	584
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	584
BmsI	GCATC	2 cut(s)	410, 595
BpuEI	CTTGAG	1 cut(s)	742
Bsa29I	ATCGAT	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	510
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	584
BseCI	ATCGAT	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	3 cut(s)	199, 392, 425
BseLI	CCNNNNNNNGG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	2 cut(s)	299, 302
BseXI	GCAGC	1 cut(s)	223
Bsh1285I	CGRYCG	1 cut(s)	187
BshVI	ATCGAT	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	510
BsmAI	GTCTC	1 cut(s)	659
BsmBI	CGTCTC	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	184, 231, 481
BspACI	CCGC	1 cut(s)	381
BspDI	ATCGAT	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	302
BspQI	GCTCTTC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	3 cut(s)	184, 231, 481
BssNAI	GTATAC	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	37
Bst1107I	GTATAC	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	2 cut(s)	173, 489
BstDEI	CTNAG	1 cut(s)	410
BstF5I	GGATG	3 cut(s)	199, 392, 425
BstHHI	GCGC	1 cut(s)	780
BstKTI	GATC	3 cut(s)	187, 234, 484
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	3 cut(s)	184, 231, 481
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	614
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	231
BstXI	CCANNNNNNTGG	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	231
BstZ17I	GTATAC	1 cut(s)	86
Bsu15I	ATCGAT	1 cut(s)	24
BsuTUI	ATCGAT	1 cut(s)	24
BtgZI	GCGATG	1 cut(s)	618
BtsCI	GGATG	3 cut(s)	199, 392, 425
BtsIMutI	CAGTG	1 cut(s)	149
CciI	TCATGA	1 cut(s)	274
CfoI	GCGC	1 cut(s)	780
ClaI	ATCGAT	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	373
CspCI	CAANNNNNGTGG	1 cut(s)	756
CviAII	CATG	3 cut(s)	275, 631, 682
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	3 cut(s)	186, 233, 483
DpnII	GATC	3 cut(s)	184, 231, 481
Eam1104I	CTCTTC	2 cut(s)	173, 489
EarI	CTCTTC	2 cut(s)	173, 489
Eco130I	CCWWGG	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	19
Eco57I	CTGAAG	3 cut(s)	423, 597, 672
EcoRII	CCWGG	1 cut(s)	582
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	37
Esp3I	CGTCTC	1 cut(s)	659
FaeI	CATG	3 cut(s)	278, 634, 685
FatI	CATG	3 cut(s)	274, 630, 681
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	212, 382
FokI	GGATG	3 cut(s)	206, 379, 432
Fsp4HI	GCNGC	2 cut(s)	212, 382
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	779
GluI	GCNGC	2 cut(s)	212, 382
HhaI	GCGC	1 cut(s)	780
Hin1II	CATG	3 cut(s)	278, 634, 685
Hin6I	GCGC	1 cut(s)	778
HinP1I	GCGC	1 cut(s)	778
HinfI	GANTC	1 cut(s)	112
HphI	GGTGA	3 cut(s)	163, 553, 741
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	4 cut(s)	16, 117, 549, 652
Hpy188III	TCNNGA	3 cut(s)	218, 275, 479
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	621
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	614
HpyF3I	CTNAG	1 cut(s)	410
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	278, 634, 685
HspAI	GCGC	1 cut(s)	778
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	3 cut(s)	184, 231, 481
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	1 cut(s)	613
LpnPI	CCDG	7 cut(s)	74, 78, 137, 231, 283, 569, 596
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	2 cut(s)	410, 595
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	309, 626
MalI	GATC	3 cut(s)	186, 233, 483
MboI	GATC	3 cut(s)	184, 231, 481
MboII	GAAGA	8 cut(s)	160, 241, 413, 506, 536, 665, 682, 712
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	3 cut(s)	55, 267, 279
MnlI	CCTC	8 cut(s)	149, 157, 277, 280, 324, 355, 593, 755
Mph1103I	ATGCAT	1 cut(s)	425
MseI	TTAA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	519
MspR9I	CCNGG	1 cut(s)	584
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	1 cut(s)	614
NdeII	GATC	3 cut(s)	184, 231, 481
NlaIII	CATG	3 cut(s)	278, 634, 685
NlaIV	GGNNCC	1 cut(s)	302
NmeAIII	GCCGAG	1 cut(s)	688
NsiI	ATGCAT	1 cut(s)	425
NspI	RCATGY	1 cut(s)	634
PagI	TCATGA	1 cut(s)	274
PciSI	GCTCTTC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	213, 383
Ple19I	CGATCG	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	231
PvuI	CGATCG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	519
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	2 cut(s)	212, 382
Sau3AI	GATC	3 cut(s)	184, 231, 481
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	9 cut(s)	39, 132, 141, 168, 216, 306, 316, 411, 439
SfaNI	GCATC	2 cut(s)	410, 595
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	721
SmoI	CTYRAG	1 cut(s)	721
Sse9I	AATT	3 cut(s)	55, 267, 279
SsiI	CCGC	1 cut(s)	381
SspI	AATATT	1 cut(s)	774
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	582
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	24, 183
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	3 cut(s)	55, 267, 279
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	7 cut(s)	242, 291, 417, 443, 537, 656, 745
TspRI	CASTG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	55
XceI	RCATGY	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	85
XspI	CTAG	1 cut(s)	305
Zsp2I	ATGCAT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.