FvH4_3g07860

UDP-glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000284
Physical Location & Seq
Forward (+)
4632512 .. 4632739
228 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07860.t1

Sequence Viewer

Length: 228 bp
ATGGATGTGTGGAAAATTGGGATCAAAGCTCAAGTTGATGAGAAAGGGATTGTGAGGCAAGAAGTAGAGCATTGTGTAAGTGAAATATTGGAAAGACAGAGGGGAAATGAAATACAGAGAAATGCTATAGCATTGAAAGAATTAGCTAGAAAGGCTGTGGATGAAGACGGAATTCGAAGGTCTAACAACAACATTGAGGAGTTCATTGCATCTCTGGTTCATCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

76

Amino Acids

8.67

Weight (kDa)

6.1

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05675 AT1G05680
fragaria_vesca FvH4_2g03180 FvH4_2g03250 FvH4_2g03250 FvH4_2g03260 FvH4_2g03280 FvH4_2g03282 FvH4_2g03300 FvH4_2g17430 FvH4_3g07860
malus_domestica MD05G1106600.v1.1 MD10G1111000.v1.1 MD10G1111100.v1.1 MD10G1111300.v1.1 MD15G1305500.v1.1 MD15G1357700.v1.1 MD16G1086200.v1.1
prunus_persica Prupe.1G505100_v2.0.a1 Prupe.1G505200_v2.0.a1 Prupe.6G211600_v2.0.a1 Prupe.8G150600_v2.0.a1 Prupe.8G150700_v2.0.a1 Prupe.8G185900_v2.0.a1 Prupe.8G186000_v2.0.a1 Prupe.8G186100_v2.0.a1 Prupe.8G186200_v2.0.a1 Prupe.I000900_v2.0.a1 Prupe.I001000_v2.0.a1
pyrus_communis pycom10g09600 pycom10g09610 pycom10g09620 pycom15g31960
rosa_chinensis RchiOBHm_Chr6g0248151 RchiOBHm_Chr6g0248201 RchiOBHm_Chr6g0248231 RchiOBHm_Chr6g0248251 RchiOBHm_Chr6g0248261 RchiOBHm_Chr6g0248271 RchiOBHm_Chr6g0248321 RchiOBHm_Chr6g0248331 RchiOBHm_Chr6g0248381 RchiOBHm_Chr6g0248391 RchiOBHm_Chr6g0248401 RchiOBHm_Chr6g0248411 RchiOBHm_Chr6g0248421 RchiOBHm_Chr6g0282101 RchiOBHm_Chr6g0282111
rosa_laevigata RLG00000012908 RLG00000012910 RLG00000015155 RLG00000015156 RLG00000015157 RLG00000015158 RLG00000015159 RLG00000015162
rosa_multiflora Rmu_co8202196.1_g000001 Rmu_co8203792.1_g000001 Rmu_co8228231.1_g000001 Rmu_co8347131.1_g000001 Rmu_sc0000569.1_g000027 Rmu_sc0001700.1_g000052 Rmu_sc0002553.1_g000004 Rmu_sc0002553.1_g000005 Rmu_sc0004210.1_g000002 Rmu_sc0004295.1_g000009 Rmu_sc0004295.1_g000028 Rmu_sc0004295.1_g000034 Rmu_sc0005018.1_g000004 Rmu_sc0005018.1_g000007 Rmu_sc0015195.1_g000002 Rmu_sc0017247.1_g000001 Rmu_sc0041438.1_g000001
rosa_roxburghii Rroxscaffold_7G00186520 Rroxscaffold_7G00186550 Rroxscaffold_7G00213300 Rroxscaffold_7G00213340 Rroxscaffold_7G00213380 Rroxscaffold_7G00213400 Rroxscaffold_7G00213450
rosa_rugosa Rorug05G0530300 Rorug05G0531000 Rorug05G0531100 Rorug05G0552500 Rorug05G0552500 Rorug06G0145500
rosa_samantha Rh2AG004400 Rh6AG045600 Rh6AG045900 Rh6AG046200 Rh6AG046500 Rh6AG046700 Rh6AG258500 Rh6BG041200 Rh6BG041600 Rh6BG041700 Rh6BG041900 Rh6BG042000 Rh6BG042500 Rh6BG043000 Rh6BG043100 Rh6BG043200 Rh6BG043300 Rh6BG043400 Rh6BG261900 Rh6CG038700 Rh6CG038900 Rh6CG039100 Rh6CG039400 Rh6CG039700 Rh6CG039800 Rh6CG039900 Rh6CG040000 Rh6CG040100 Rh6CG260800
rosa_wichuraiana Rw6G003950 Rw6G003970 Rw6G003980 Rw6G004010 Rw6G004050 Rw6G004060 Rw6G004070 Rw6G004080 Rw6G022370 Rw6G022380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 29
AcsI RAATTY 1 cut(s) 171
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 2 cut(s) 29, 146
AluI AGCT 2 cut(s) 29, 146
AlwI GGATC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 171
AsuII TTCGAA 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 171
BfaI CTAG 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 126
BmsI GCATC 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 204
BseGI GGATG 2 cut(s) 10, 166
BseMI GCAATG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 175
Bsp143I GATC 1 cut(s) 21
BspPI GGATC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 204
BssMI GATC 1 cut(s) 21
BstBI TTCGAA 1 cut(s) 175
BstF5I GGATG 2 cut(s) 10, 166
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 171
BtsCI GGATG 2 cut(s) 10, 166
CviJI RGCY 3 cut(s) 29, 146, 155
CviKI_1 RGCY 3 cut(s) 29, 146, 155
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
EcoRI GAATTC 1 cut(s) 171
FaiI YATR 1 cut(s) 128
FokI GGATG 2 cut(s) 17, 173
FspBI CTAG 1 cut(s) 147
HpyAV CCTTC 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 1 cut(s) 200
LweI GCATC 1 cut(s) 218
MaeI CTAG 1 cut(s) 147
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 1 cut(s) 176
MluCI AATT 3 cut(s) 15, 140, 171
MnlI CCTC 3 cut(s) 48, 93, 190
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 21
NspV TTCGAA 1 cut(s) 175
Sau3AI GATC 1 cut(s) 21
SetI ASST 3 cut(s) 31, 148, 182
SfaNI GCATC 1 cut(s) 218
SfcI CTRYAG 1 cut(s) 126
SfuI TTCGAA 1 cut(s) 175
SgeI CNNG 3 cut(s) 44, 71, 159
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 3 cut(s) 15, 140, 171
SspI AATATT 1 cut(s) 87
SspMI CTAG 1 cut(s) 147
TaqI TCGA 1 cut(s) 175
TasI AATT 3 cut(s) 15, 140, 171
TspDTI ATGAA 4 cut(s) 123, 177, 193, 209
TspGWI ACGGA 1 cut(s) 183
XapI RAATTY 1 cut(s) 171
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.