Rh6CG039400

UDP-glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000284
Physical Location & Seq
Reverse (-)
3798170 .. 3798691
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG039400.1

Sequence Viewer

Length: 522 bp
ATGAAGACCATTGGACCAACTATACCATCTCAATACTTGGATAAGCGTCTTGAAGATGATAAAGACTATGGTTTCAACATGTTTAAACCAAAGAGTGATGCCTGCATGAAATGGCTCAATGAACAGCCAAAGGGCTCTATTGTTTATGTGTCATTTGGCAGCCTAGCAGAAATTGAAGCTGAGCAAATGGAGGAACTGGCTTTCGGATTAAGGAGTAGTAAAAGGAAATTCTTGTGGGTGATTAGAGAATCAGACGCAAGGAAGGTCCCGAAAGGGTTTGTAGAGGAGACATCTGCAAAGGGTTTTGTGGTTTCCTGGTGTCCCCAACTGGAGGTTTTGGCTCATGAAGCAGTTGGTTGCTTCATCACACATTGTGGTTGGAACTCCACATTGGAGGCTTTGAGCTTGGGGGTTCCAATGGTTGCAATGCCTCGATGGACCGACCAAAGCACCAATGCCAAGTACATTATGGATGTGTGGAAATTGGGATCAGAGCTCAAGTCGATGAGAAAGGGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

173

Amino Acids

19.61

Weight (kDa)

7.63

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 28 - 161 1e-26 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05675 AT1G05680
fragaria_vesca FvH4_2g03180 FvH4_2g03250 FvH4_2g03250 FvH4_2g03260 FvH4_2g03280 FvH4_2g03282 FvH4_2g03300 FvH4_2g17430 FvH4_3g07860
malus_domestica MD05G1106600.v1.1 MD10G1111000.v1.1 MD10G1111100.v1.1 MD10G1111300.v1.1 MD15G1305500.v1.1 MD15G1357700.v1.1 MD16G1086200.v1.1
prunus_persica Prupe.1G505100_v2.0.a1 Prupe.1G505200_v2.0.a1 Prupe.6G211600_v2.0.a1 Prupe.8G150600_v2.0.a1 Prupe.8G150700_v2.0.a1 Prupe.8G185900_v2.0.a1 Prupe.8G186000_v2.0.a1 Prupe.8G186100_v2.0.a1 Prupe.8G186200_v2.0.a1 Prupe.I000900_v2.0.a1 Prupe.I001000_v2.0.a1
pyrus_communis pycom10g09600 pycom10g09610 pycom10g09620 pycom15g31960
rosa_chinensis RchiOBHm_Chr6g0248151 RchiOBHm_Chr6g0248201 RchiOBHm_Chr6g0248231 RchiOBHm_Chr6g0248251 RchiOBHm_Chr6g0248261 RchiOBHm_Chr6g0248271 RchiOBHm_Chr6g0248321 RchiOBHm_Chr6g0248331 RchiOBHm_Chr6g0248381 RchiOBHm_Chr6g0248391 RchiOBHm_Chr6g0248401 RchiOBHm_Chr6g0248411 RchiOBHm_Chr6g0248421 RchiOBHm_Chr6g0282101 RchiOBHm_Chr6g0282111
rosa_laevigata RLG00000012908 RLG00000012910 RLG00000015155 RLG00000015156 RLG00000015157 RLG00000015158 RLG00000015159 RLG00000015162
rosa_multiflora Rmu_co8202196.1_g000001 Rmu_co8203792.1_g000001 Rmu_co8228231.1_g000001 Rmu_co8347131.1_g000001 Rmu_sc0000569.1_g000027 Rmu_sc0001700.1_g000052 Rmu_sc0002553.1_g000004 Rmu_sc0002553.1_g000005 Rmu_sc0004210.1_g000002 Rmu_sc0004295.1_g000009 Rmu_sc0004295.1_g000028 Rmu_sc0004295.1_g000034 Rmu_sc0005018.1_g000004 Rmu_sc0005018.1_g000007 Rmu_sc0015195.1_g000002 Rmu_sc0017247.1_g000001 Rmu_sc0041438.1_g000001
rosa_roxburghii Rroxscaffold_7G00186520 Rroxscaffold_7G00186550 Rroxscaffold_7G00213300 Rroxscaffold_7G00213340 Rroxscaffold_7G00213380 Rroxscaffold_7G00213400 Rroxscaffold_7G00213450
rosa_rugosa Rorug05G0530300 Rorug05G0531000 Rorug05G0531100 Rorug05G0552500 Rorug05G0552500 Rorug06G0145500
rosa_samantha Rh2AG004400 Rh6AG045600 Rh6AG045900 Rh6AG046200 Rh6AG046500 Rh6AG046700 Rh6AG258500 Rh6BG041200 Rh6BG041600 Rh6BG041700 Rh6BG041900 Rh6BG042000 Rh6BG042500 Rh6BG043000 Rh6BG043100 Rh6BG043200 Rh6BG043300 Rh6BG043400 Rh6BG261900 Rh6CG038700 Rh6CG038900 Rh6CG039100 Rh6CG039400 Rh6CG039700 Rh6CG039800 Rh6CG039900 Rh6CG040000 Rh6CG040100 Rh6CG260800
rosa_wichuraiana Rw6G003950 Rw6G003970 Rw6G003980 Rw6G004010 Rw6G004050 Rw6G004060 Rw6G004070 Rw6G004080 Rw6G022370 Rw6G022380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 496
AcsI RAATTY 1 cut(s) 227
AdeI CACNNNGTG 1 cut(s) 374
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 1 cut(s) 331
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 3 cut(s) 53, 76, 176
AjnI CCWGG 1 cut(s) 314
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 3 cut(s) 179, 405, 496
AluI AGCT 3 cut(s) 179, 405, 496
Alw21I GWGCWC 1 cut(s) 498
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 1 cut(s) 496
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 227
AspS9I GGNCC 3 cut(s) 14, 265, 438
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 3 cut(s) 14, 265, 438
BanII GRGCYC 2 cut(s) 137, 498
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 498
BbvI GCAGC 1 cut(s) 171
BccI CCATC 2 cut(s) 34, 429
BciT130I CCWGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 1 cut(s) 164
BisI GCNGC 1 cut(s) 160
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 3 cut(s) 14, 265, 438
BmgT120I GGNCC 3 cut(s) 14, 265, 438
BmiI GGNNCC 2 cut(s) 267, 414
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 350
Bpu1102I GCTNAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 482
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse1I ACTGG 2 cut(s) 201, 333
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 1 cut(s) 316
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 2 cut(s) 201, 333
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 498
BslFI GGGAC 2 cut(s) 251, 306
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 281
BsmFI GGGAC 2 cut(s) 251, 306
Bsp1286I GDGCHC 2 cut(s) 137, 498
Bsp143I GATC 1 cut(s) 488
Bsp1720I GCTNAGC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 172
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 267, 414
BspPI GGATC 1 cut(s) 496
BsrDI GCAATG 1 cut(s) 432
BsrI ACTGG 2 cut(s) 201, 333
BssMI GATC 1 cut(s) 488
Bst2UI CCWGG 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 478
BstKTI GATC 1 cut(s) 491
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 488
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstNI CCWGG 1 cut(s) 316
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 171
BstV2I GAAGAC 1 cut(s) 11
BtsCI GGATG 1 cut(s) 478
Cac8I GCNNGC 1 cut(s) 103
CciI TCATGA 1 cut(s) 343
Cfr13I GGNCC 3 cut(s) 14, 265, 438
CseI GACGC 2 cut(s) 35, 263
Csp6I GTAC 1 cut(s) 463
CviAII CATG 3 cut(s) 79, 106, 344
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 490
DpnII GATC 1 cut(s) 488
DraI TTTAAA 1 cut(s) 85
DraIII CACNNNGTG 1 cut(s) 374
Ecl136II GAGCTC 1 cut(s) 496
Eco24I GRGCYC 2 cut(s) 137, 498
Eco47I GGWCC 3 cut(s) 14, 265, 438
Eco53kI GAGCTC 1 cut(s) 496
EcoICRI GAGCTC 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 314
EcoT38I GRGCYC 2 cut(s) 137, 498
FaeI CATG 3 cut(s) 82, 109, 347
FaiI YATR 7 cut(s) 23, 69, 80, 107, 147, 345, 470
FaqI GGGAC 2 cut(s) 251, 306
FatI CATG 3 cut(s) 78, 105, 343
Fnu4HI GCNGC 1 cut(s) 160
FokI GGATG 1 cut(s) 485
FriOI GRGCYC 2 cut(s) 137, 498
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 164
GluI GCNGC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 350
HgaI GACGC 2 cut(s) 35, 263
Hin1II CATG 3 cut(s) 82, 109, 347
HinfI GANTC 1 cut(s) 248
HphI GGTGA 1 cut(s) 250
Hpy188I TCNGA 3 cut(s) 206, 253, 493
Hpy188III TCNNGA 3 cut(s) 50, 268, 344
HpyAV CCTTC 1 cut(s) 256
HpyCH4V TGCA 3 cut(s) 105, 296, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 3 cut(s) 82, 109, 347
Kzo9I GATC 1 cut(s) 488
LpnPI CCDG 5 cut(s) 115, 182, 301, 314, 328
Lsp1109I GCAGC 1 cut(s) 171
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 164
MalI GATC 1 cut(s) 490
MboI GATC 1 cut(s) 488
MboII GAAGA 2 cut(s) 16, 65
MhlI GDGCHC 2 cut(s) 137, 498
MluCI AATT 3 cut(s) 171, 227, 482
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 5 cut(s) 184, 277, 325, 388, 441
MseI TTAA 2 cut(s) 84, 209
MspR9I CCNGG 1 cut(s) 316
MssI GTTTAAAC 1 cut(s) 85
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 347
NdeII GATC 1 cut(s) 488
NlaIII CATG 3 cut(s) 82, 109, 347
NlaIV GGNNCC 2 cut(s) 267, 414
NspI RCATGY 1 cut(s) 82
PagI TCATGA 1 cut(s) 343
PciI ACATGT 1 cut(s) 78
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 161
PmeI GTTTAAAC 1 cut(s) 85
PpuMI RGGWCCY 1 cut(s) 265
PscI ACATGT 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 498
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 2 cut(s) 267, 414
PspPI GGNCC 3 cut(s) 14, 265, 438
PspPPI RGGWCCY 1 cut(s) 265
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SacI GAGCTC 1 cut(s) 498
SaqAI TTAA 2 cut(s) 84, 209
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 1 cut(s) 488
Sau96I GGNCC 3 cut(s) 14, 265, 438
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 2 cut(s) 137, 498
SetI ASST 5 cut(s) 181, 267, 336, 407, 498
SfaNI GCATC 1 cut(s) 88
SinI GGWCC 3 cut(s) 14, 265, 438
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 3 cut(s) 171, 227, 482
SspMI CTAG 1 cut(s) 164
SstI GAGCTC 1 cut(s) 498
StyD4I CCNGG 1 cut(s) 314
TaqI TCGA 2 cut(s) 433, 503
TaqII GACCGA 1 cut(s) 455
TasI AATT 3 cut(s) 171, 227, 482
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 84, 209
Tru9I TTAA 2 cut(s) 84, 209
TseI GCWGC 1 cut(s) 159
TspDTI ATGAA 5 cut(s) 17, 122, 135, 352, 360
VpaK11BI GGWCC 3 cut(s) 14, 265, 438
XapI RAATTY 1 cut(s) 227
XceI RCATGY 1 cut(s) 82
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.