Rh6BG042000

UDP-glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000284
Physical Location & Seq
Forward (+)
6838833 .. 6839420
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG042000.1

Sequence Viewer

Length: 588 bp
ATGTACTTGGATAACAGACTTAAAGAGGACAAAGATTATGGTGTCAGTCTCTTCAAGCAAAATAATGATGCCTGCATGAAATGGCTCAATGAACAACCGAAGGTGTCTGTTGTTTATGTGTCATTTGGTAGTGGAGCAGAACTTGGAGCTGAGCAAATGGAGGAACTGGCTTGGGGATTGAGGAGCAGCAAAAGCAATTTCTTGTGGGTGGTTAGGGAATCAGAAGCGGGTAAGATCCCGAAAGGGTTTGTGGAGGAGACATCTGAGAACGGTTTGGTAGTCTCTTGGTGTCCCCAACTGGAGGTCTTGGCTCATGAAGCTGTTGGGTGCTTCATTACACATTGTGGTTGGAACTCTACATTGGAGTCTTTGAGTCTAGGGGTTCCACTGCTGGCAATGCCACAATGGACTGACCAAGGCACCAATGCCAAGTACATTATGGATGTGTGGAAAACTGGACTTAAAGCTTTAGCTGATGAGAAAGGAATTGTAAGGAAAGATGTGGTTGAGCATTGTATAATTGAAATAATGGAAGGAGAGACAGGGAAAGAGTCGAAGGAATGCTATGAAATGGAAGCAAGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

195

Amino Acids

21.78

Weight (kDa)

4.74

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 34 - 153 5.6e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05675 AT1G05680
fragaria_vesca FvH4_2g03180 FvH4_2g03250 FvH4_2g03250 FvH4_2g03260 FvH4_2g03280 FvH4_2g03282 FvH4_2g03300 FvH4_2g17430 FvH4_3g07860
malus_domestica MD05G1106600.v1.1 MD10G1111000.v1.1 MD10G1111100.v1.1 MD10G1111300.v1.1 MD15G1305500.v1.1 MD15G1357700.v1.1 MD16G1086200.v1.1
prunus_persica Prupe.1G505100_v2.0.a1 Prupe.1G505200_v2.0.a1 Prupe.6G211600_v2.0.a1 Prupe.8G150600_v2.0.a1 Prupe.8G150700_v2.0.a1 Prupe.8G185900_v2.0.a1 Prupe.8G186000_v2.0.a1 Prupe.8G186100_v2.0.a1 Prupe.8G186200_v2.0.a1 Prupe.I000900_v2.0.a1 Prupe.I001000_v2.0.a1
pyrus_communis pycom10g09600 pycom10g09610 pycom10g09620 pycom15g31960
rosa_chinensis RchiOBHm_Chr6g0248151 RchiOBHm_Chr6g0248201 RchiOBHm_Chr6g0248231 RchiOBHm_Chr6g0248251 RchiOBHm_Chr6g0248261 RchiOBHm_Chr6g0248271 RchiOBHm_Chr6g0248321 RchiOBHm_Chr6g0248331 RchiOBHm_Chr6g0248381 RchiOBHm_Chr6g0248391 RchiOBHm_Chr6g0248401 RchiOBHm_Chr6g0248411 RchiOBHm_Chr6g0248421 RchiOBHm_Chr6g0282101 RchiOBHm_Chr6g0282111
rosa_laevigata RLG00000012908 RLG00000012910 RLG00000015155 RLG00000015156 RLG00000015157 RLG00000015158 RLG00000015159 RLG00000015162
rosa_multiflora Rmu_co8202196.1_g000001 Rmu_co8203792.1_g000001 Rmu_co8228231.1_g000001 Rmu_co8347131.1_g000001 Rmu_sc0000569.1_g000027 Rmu_sc0001700.1_g000052 Rmu_sc0002553.1_g000004 Rmu_sc0002553.1_g000005 Rmu_sc0004210.1_g000002 Rmu_sc0004295.1_g000009 Rmu_sc0004295.1_g000028 Rmu_sc0004295.1_g000034 Rmu_sc0005018.1_g000004 Rmu_sc0005018.1_g000007 Rmu_sc0015195.1_g000002 Rmu_sc0017247.1_g000001 Rmu_sc0041438.1_g000001
rosa_roxburghii Rroxscaffold_7G00186520 Rroxscaffold_7G00186550 Rroxscaffold_7G00213300 Rroxscaffold_7G00213340 Rroxscaffold_7G00213380 Rroxscaffold_7G00213400 Rroxscaffold_7G00213450
rosa_rugosa Rorug05G0530300 Rorug05G0531000 Rorug05G0531100 Rorug05G0552500 Rorug05G0552500 Rorug06G0145500
rosa_samantha Rh2AG004400 Rh6AG045600 Rh6AG045900 Rh6AG046200 Rh6AG046500 Rh6AG046700 Rh6AG258500 Rh6BG041200 Rh6BG041600 Rh6BG041700 Rh6BG041900 Rh6BG042000 Rh6BG042500 Rh6BG043000 Rh6BG043100 Rh6BG043200 Rh6BG043300 Rh6BG043400 Rh6BG261900 Rh6CG038700 Rh6CG038900 Rh6CG039100 Rh6CG039400 Rh6CG039700 Rh6CG039800 Rh6CG039900 Rh6CG040000 Rh6CG040100 Rh6CG260800
rosa_wichuraiana Rw6G003950 Rw6G003970 Rw6G003980 Rw6G004010 Rw6G004050 Rw6G004060 Rw6G004070 Rw6G004080 Rw6G022370 Rw6G022380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 419
AciI CCGC 1 cut(s) 227
AclWI GGATC 1 cut(s) 229
AdeI CACNNNGTG 1 cut(s) 344
AfaI GTAC 2 cut(s) 5, 434
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 2 cut(s) 55, 524
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 4 cut(s) 149, 320, 467, 473
AluI AGCT 4 cut(s) 149, 320, 467, 473
Alw26I GTCTC 4 cut(s) 53, 251, 286, 533
AlwI GGATC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 186
BanI GGYRCC 1 cut(s) 419
BbvI GCAGC 1 cut(s) 198
BcoDI GTCTC 4 cut(s) 53, 251, 286, 533
BfaI CTAG 2 cut(s) 377, 586
BisI GCNGC 1 cut(s) 187
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 384, 421
BmsI GCATC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 320
Bpu1102I GCTNAGC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 415
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse1I ACTGG 3 cut(s) 171, 303, 460
Bse3DI GCAATG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 2 cut(s) 141, 255
BseNI ACTGG 3 cut(s) 171, 303, 460
BseRI GAGGAG 2 cut(s) 196, 269
BseXI GCAGC 1 cut(s) 198
BshNI GGYRCC 1 cut(s) 419
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 4 cut(s) 53, 251, 286, 533
BsmFI GGGAC 1 cut(s) 276
BsmI GAATGC 1 cut(s) 566
Bsp143I GATC 1 cut(s) 234
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 1 cut(s) 227
BspCNI CTCAG 2 cut(s) 142, 256
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 384, 421
BspPI GGATC 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 419
BsrDI GCAATG 1 cut(s) 402
BsrI ACTGG 3 cut(s) 171, 303, 460
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 415
Bst4CI ACNGT 1 cut(s) 272
Bst6I CTCTTC 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 73, 393
BstDEI CTNAG 2 cut(s) 150, 264
BstF5I GGATG 1 cut(s) 448
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 4 cut(s) 53, 251, 286, 533
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 3 cut(s) 192, 317, 397
BstV1I GCAGC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BtsCI GGATG 1 cut(s) 448
BtsI GCAGTG 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 386
Cac8I GCNNGC 2 cut(s) 73, 393
CciI TCATGA 1 cut(s) 313
Csp6I GTAC 2 cut(s) 4, 433
CviAII CATG 2 cut(s) 76, 314
CviJI RGCY 8 cut(s) 85, 149, 170, 311, 320, 467, 473, 585
CviKI_1 RGCY 8 cut(s) 85, 149, 170, 311, 320, 467, 473, 585
CviQI GTAC 2 cut(s) 4, 433
DdeI CTNAG 2 cut(s) 150, 264
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
DraIII CACNNNGTG 1 cut(s) 344
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 2 cut(s) 79, 317
FaiI YATR 7 cut(s) 39, 77, 117, 315, 440, 518, 567
FaqI GGGAC 1 cut(s) 276
FatI CATG 2 cut(s) 75, 313
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 1 cut(s) 455
Fsp4HI GCNGC 1 cut(s) 187
FspBI CTAG 2 cut(s) 377, 586
GluI GCNGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 320
Hin1II CATG 2 cut(s) 79, 317
HindIII AAGCTT 1 cut(s) 465
HinfI GANTC 4 cut(s) 218, 365, 373, 551
Hpy188I TCNGA 2 cut(s) 223, 265
Hpy188III TCNNGA 2 cut(s) 238, 314
HpyAV CCTTC 3 cut(s) 94, 527, 550
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 3 cut(s) 192, 317, 397
HpyF3I CTNAG 2 cut(s) 150, 264
Hsp92II CATG 2 cut(s) 79, 317
Kzo9I GATC 1 cut(s) 234
LmnI GCTCC 3 cut(s) 134, 146, 183
LpnPI CCDG 6 cut(s) 85, 152, 284, 377, 441, 528
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 1 cut(s) 58
MaeI CTAG 2 cut(s) 377, 586
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 1 cut(s) 43
MflI RGATCY 1 cut(s) 234
MluCI AATT 3 cut(s) 196, 486, 519
MlyI GAGTC 3 cut(s) 374, 382, 560
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 5 cut(s) 19, 154, 174, 247, 295
MseI TTAA 2 cut(s) 21, 462
Mva1269I GAATGC 1 cut(s) 566
MwoI GCNNNNNNNGC 3 cut(s) 192, 317, 397
NdeII GATC 1 cut(s) 234
NlaIII CATG 2 cut(s) 79, 317
NlaIV GGNNCC 2 cut(s) 384, 421
PagI TCATGA 1 cut(s) 313
PctI GAATGC 1 cut(s) 566
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 188
PleI GAGTC 3 cut(s) 373, 381, 559
PpsI GAGTC 3 cut(s) 373, 381, 559
PspN4I GGNNCC 2 cut(s) 384, 421
PsuI RGATCY 1 cut(s) 234
RsaI GTAC 2 cut(s) 5, 434
RsaNI GTAC 2 cut(s) 4, 433
SaqAI TTAA 2 cut(s) 21, 462
SatI GCNGC 1 cut(s) 187
Sau3AI GATC 1 cut(s) 234
SchI GAGTC 3 cut(s) 374, 382, 560
SetI ASST 6 cut(s) 105, 151, 306, 322, 469, 475
SfaNI GCATC 1 cut(s) 58
Sse9I AATT 3 cut(s) 196, 486, 519
SsiI CCGC 1 cut(s) 227
SspMI CTAG 2 cut(s) 377, 586
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 1 cut(s) 272
TaqI TCGA 1 cut(s) 554
TasI AATT 3 cut(s) 196, 486, 519
TatI WGTACW 2 cut(s) 3, 432
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 2 cut(s) 21, 462
Tru9I TTAA 2 cut(s) 21, 462
TscAI CASTG 1 cut(s) 393
TseI GCWGC 1 cut(s) 186
TspDTI ATGAA 5 cut(s) 92, 105, 322, 330, 582
TspRI CASTG 1 cut(s) 393
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XspI CTAG 2 cut(s) 377, 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.