Rmu_co8228231.1_g000001

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8228231.1
OG0000284
Physical Location & Seq
Reverse (-)
2 .. 413
412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8228231.1_g000001.1.cds

Sequence Viewer

Length: 412 bp
atggagaatcccaaacagtacagaggtcatgttgtggtgcttccttatcctagccaaggccacatcaaccctctcctccagttcgcaaagcgcctggcctctaaaggcgtgaaggccactctagccaccaccagctacactgtcagctccatttgtgtccctaacgttggggttgaacccatctccgatgggttcgacgagtctgggtttgctcaagccgcggatgaggagacatttcttcagtcgttcaaggccaacggctcgagaaccctatctcaagtcctgaagaagttcgaagactctgagttcccggtgaattgtgttgtgtatgattcatttctgccttgggcgcttgatgtggcgaaggaacatggcatatttggagcttcttttttcaccaattcggctagtg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009072 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032787 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042445 GO:0042537 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045229 GO:0046482 GO:0046527 GO:0047251 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051179 GO:0051239 GO:0051240 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:0098542 GO:1900140 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901657 GO:1901659 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

137

Amino Acids

14.93

Weight (kDa)

5.53

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05675 AT1G05680
fragaria_vesca FvH4_2g03180 FvH4_2g03250 FvH4_2g03250 FvH4_2g03260 FvH4_2g03280 FvH4_2g03282 FvH4_2g03300 FvH4_2g17430 FvH4_3g07860
malus_domestica MD05G1106600.v1.1 MD10G1111000.v1.1 MD10G1111100.v1.1 MD10G1111300.v1.1 MD15G1305500.v1.1 MD15G1357700.v1.1 MD16G1086200.v1.1
prunus_persica Prupe.1G505100_v2.0.a1 Prupe.1G505200_v2.0.a1 Prupe.6G211600_v2.0.a1 Prupe.8G150600_v2.0.a1 Prupe.8G150700_v2.0.a1 Prupe.8G185900_v2.0.a1 Prupe.8G186000_v2.0.a1 Prupe.8G186100_v2.0.a1 Prupe.8G186200_v2.0.a1 Prupe.I000900_v2.0.a1 Prupe.I001000_v2.0.a1
pyrus_communis pycom10g09600 pycom10g09610 pycom10g09620 pycom15g31960
rosa_chinensis RchiOBHm_Chr6g0248151 RchiOBHm_Chr6g0248201 RchiOBHm_Chr6g0248231 RchiOBHm_Chr6g0248251 RchiOBHm_Chr6g0248261 RchiOBHm_Chr6g0248271 RchiOBHm_Chr6g0248321 RchiOBHm_Chr6g0248331 RchiOBHm_Chr6g0248381 RchiOBHm_Chr6g0248391 RchiOBHm_Chr6g0248401 RchiOBHm_Chr6g0248411 RchiOBHm_Chr6g0248421 RchiOBHm_Chr6g0282101 RchiOBHm_Chr6g0282111
rosa_laevigata RLG00000012908 RLG00000012910 RLG00000015155 RLG00000015156 RLG00000015157 RLG00000015158 RLG00000015159 RLG00000015162
rosa_multiflora Rmu_co8202196.1_g000001 Rmu_co8203792.1_g000001 Rmu_co8228231.1_g000001 Rmu_co8347131.1_g000001 Rmu_sc0000569.1_g000027 Rmu_sc0001700.1_g000052 Rmu_sc0002553.1_g000004 Rmu_sc0002553.1_g000005 Rmu_sc0004210.1_g000002 Rmu_sc0004295.1_g000009 Rmu_sc0004295.1_g000028 Rmu_sc0004295.1_g000034 Rmu_sc0005018.1_g000004 Rmu_sc0005018.1_g000007 Rmu_sc0015195.1_g000002 Rmu_sc0017247.1_g000001 Rmu_sc0041438.1_g000001
rosa_roxburghii Rroxscaffold_7G00186520 Rroxscaffold_7G00186550 Rroxscaffold_7G00213300 Rroxscaffold_7G00213340 Rroxscaffold_7G00213380 Rroxscaffold_7G00213400 Rroxscaffold_7G00213450
rosa_rugosa Rorug05G0530300 Rorug05G0531000 Rorug05G0531100 Rorug05G0552500 Rorug05G0552500 Rorug06G0145500
rosa_samantha Rh2AG004400 Rh6AG045600 Rh6AG045900 Rh6AG046200 Rh6AG046500 Rh6AG046700 Rh6AG258500 Rh6BG041200 Rh6BG041600 Rh6BG041700 Rh6BG041900 Rh6BG042000 Rh6BG042500 Rh6BG043000 Rh6BG043100 Rh6BG043200 Rh6BG043300 Rh6BG043400 Rh6BG261900 Rh6CG038700 Rh6CG038900 Rh6CG039100 Rh6CG039400 Rh6CG039700 Rh6CG039800 Rh6CG039900 Rh6CG040000 Rh6CG040100 Rh6CG260800
rosa_wichuraiana Rw6G003950 Rw6G003970 Rw6G003980 Rw6G004010 Rw6G004050 Rw6G004060 Rw6G004070 Rw6G004080 Rw6G022370 Rw6G022380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 221
AciI CCGC 2 cut(s) 219, 221
AclI AACGTT 1 cut(s) 165
AcuI CTGAAG 2 cut(s) 224, 305
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 56, 167
AgsI TTSAA 2 cut(s) 176, 250
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 3 cut(s) 135, 147, 386
AluI AGCT 3 cut(s) 135, 147, 386
Alw26I GTCTC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 262
AoxI GGCC 4 cut(s) 58, 96, 114, 252
Asp700I GAANNNNTTC 1 cut(s) 290
AspLEI GCGC 2 cut(s) 93, 352
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 325, 388
AsuII TTCGAA 1 cut(s) 294
AvaI CYCGRG 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 303
BccI CCATC 2 cut(s) 182, 188
BceAI ACGGC 1 cut(s) 274
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 3 cut(s) 51, 122, 408
BfoI RGCGCY 2 cut(s) 94, 353
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 2 cut(s) 95, 311
BmeT110I CYCGRG 1 cut(s) 262
BmrFI CCNGG 2 cut(s) 95, 311
BpiI GAAGAC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 62
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 2 cut(s) 198, 261
BpuMI CCSGG 1 cut(s) 311
BsaJI CCNNGG 3 cut(s) 55, 219, 344
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 167
Bse1I ACTGG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 3 cut(s) 55, 219, 344
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 56, 167
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 2 cut(s) 65, 242
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 4 cut(s) 60, 98, 116, 254
BsiHKCI CYCGRG 1 cut(s) 262
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 56, 167
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 4 cut(s) 60, 98, 116, 254
BsoBI CYCGRG 1 cut(s) 262
Bsp119I TTCGAA 1 cut(s) 294
BspACI CCGC 2 cut(s) 219, 221
BspANI GGCC 4 cut(s) 60, 98, 116, 254
BspCNI CTCAG 1 cut(s) 295
BspFNI CGCG 1 cut(s) 221
BspT104I TTCGAA 1 cut(s) 294
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 3 cut(s) 55, 219, 344
BssT1I CCWWGG 2 cut(s) 55, 344
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 2 cut(s) 18, 142
BstBI TTCGAA 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 303
BstDSI CCRYGG 1 cut(s) 219
BstENI CCTNNNNNAGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 229
BstFNI CGCG 1 cut(s) 221
BstH2I RGCGCY 2 cut(s) 94, 353
BstHHI GCGC 2 cut(s) 93, 352
BstMAI GTCTC 1 cut(s) 224
BstMWI GCNNNNNNNGC 3 cut(s) 122, 218, 349
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 2 cut(s) 93, 309
BstUI CGCG 1 cut(s) 221
BstV2I GAAGAC 1 cut(s) 303
BsuRI GGCC 4 cut(s) 60, 98, 116, 254
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 138
CfoI GCGC 2 cut(s) 93, 352
Cfr42I CCGCGG 1 cut(s) 222
Csp6I GTAC 1 cut(s) 19
CviAII CATG 2 cut(s) 29, 371
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 303
Eco130I CCWWGG 2 cut(s) 55, 344
Eco57I CTGAAG 2 cut(s) 224, 305
Eco88I CYCGRG 1 cut(s) 262
EcoNI CCTNNNNNAGG 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 2 cut(s) 55, 344
ErhI CCWWGG 2 cut(s) 55, 344
FaeI CATG 2 cut(s) 32, 374
FaiI YATR 4 cut(s) 30, 330, 372, 377
FaqI GGGAC 1 cut(s) 143
FatI CATG 2 cut(s) 28, 370
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 3 cut(s) 51, 122, 408
GlaI GCGC 2 cut(s) 92, 351
GluI GCNGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 62
HaeII RGCGCY 2 cut(s) 94, 353
HaeIII GGCC 4 cut(s) 60, 98, 116, 254
HapII CCGG 1 cut(s) 311
HhaI GCGC 2 cut(s) 93, 352
Hin1II CATG 2 cut(s) 32, 374
Hin6I GCGC 2 cut(s) 91, 350
HinP1I GCGC 2 cut(s) 91, 350
HinfI GANTC 4 cut(s) 7, 200, 299, 332
HpaII CCGG 1 cut(s) 311
HphI GGTGA 2 cut(s) 325, 388
Hpy188I TCNGA 2 cut(s) 187, 304
Hpy188III TCNNGA 2 cut(s) 264, 283
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 2 cut(s) 106, 358
HpyCH4III ACNGT 2 cut(s) 18, 142
HpyCH4IV ACGT 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 218, 349
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 32, 374
HspAI GCGC 2 cut(s) 91, 350
KspI CCGCGG 1 cut(s) 222
LmnI GCTCC 2 cut(s) 152, 383
LpnPI CCDG 7 cut(s) 80, 92, 107, 145, 189, 296, 324
MaeI CTAG 3 cut(s) 51, 122, 408
MaeII ACGT 1 cut(s) 165
MboII GAAGA 3 cut(s) 230, 298, 308
MluCI AATT 2 cut(s) 316, 400
MlyI GAGTC 2 cut(s) 209, 293
MnlI CCTC 5 cut(s) 17, 81, 86, 109, 220
MroXI GAANNNNTTC 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 2 cut(s) 95, 311
MvaI CCWGG 1 cut(s) 95
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 122, 218, 349
NciI CCSGG 1 cut(s) 311
NlaIII CATG 2 cut(s) 32, 374
NspV TTCGAA 1 cut(s) 294
PaeR7I CTCGAG 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 2 cut(s) 7, 332
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 2 cut(s) 208, 293
PpsI GAGTC 2 cut(s) 208, 293
Psp1406I AACGTT 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SacII CCGCGG 1 cut(s) 222
SatI GCNGC 1 cut(s) 219
SchI GAGTC 2 cut(s) 209, 293
ScrFI CCNGG 2 cut(s) 95, 311
SetI ASST 5 cut(s) 28, 137, 149, 168, 388
Sfr274I CTCGAG 1 cut(s) 262
Sfr303I CCGCGG 1 cut(s) 222
SfuI TTCGAA 1 cut(s) 294
SgrBI CCGCGG 1 cut(s) 222
SlaI CTCGAG 1 cut(s) 262
SmlI CTYRAG 3 cut(s) 213, 262, 276
SmoI CTYRAG 3 cut(s) 213, 262, 276
Sse9I AATT 2 cut(s) 316, 400
SsiI CCGC 2 cut(s) 219, 221
SspMI CTAG 3 cut(s) 51, 122, 408
StyD4I CCNGG 2 cut(s) 93, 309
StyI CCWWGG 2 cut(s) 55, 344
TaaI ACNGT 2 cut(s) 18, 142
TaiI ACGT 1 cut(s) 168
TaqI TCGA 3 cut(s) 195, 263, 294
TasI AATT 2 cut(s) 316, 400
TatI WGTACW 1 cut(s) 18
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 2 cut(s) 7, 332
TscAI CASTG 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 324
TspRI CASTG 1 cut(s) 145
XagI CCTNNNNNAGG 1 cut(s) 54
XhoI CTCGAG 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 3 cut(s) 51, 122, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.