Rh6BG041600

UDP-glycosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
6800548 .. 6801260
713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG041600.1

Sequence Viewer

Length: 564 bp
ATGCTAGGTCTATATTTAACAGTAAGCTTATCTGGAGAAACCATATCATGTAAACAGAGAAACGATGGAGAGAGAACTCGCAAAGCTCATTGTTTAGTCCTAACCTATCCAACCCAAGGCCATATCAATCCCATGCTTCAATTTGCCAAGCTTCACCATCACAAAGGACTCAAAGTCACATTGGTCACCACTCATTTTCTCCTCAACACATTACAACTCCATGCTGGATCCAGTAAGTGCAACATCGCCCTCGAGACCATTTCTGATGGCTACGATGAGGGAGGTTTTGCAACAGCAGAAAGCACAGACGCTTACTTGAACCGCTTTTGGGAAATAGGTCCCCAAACTTTAACTAAGCTCCTTAGGAGGATGTCCAGCTCTGAATACCCAGTAGATTGTATTGTTTATGATGCATTCATGCCTTGGTCCTTGGATGTTGCCAAGAAATTTGGGATCTTTGGGGCTGTTTTCTTTACCCAGTCTTGTGCTGTTGGAAATATTTATTATCATGCCCAAAAAGGACTGTTGAAGCTTCCTTTAGTGGCGGTGATGAGGAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
Pfam Domains
Protein Families

Protein Analysis

187

Amino Acids

20.94

Weight (kDa)

8.95

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05675 AT1G05680
fragaria_vesca FvH4_2g03180 FvH4_2g03250 FvH4_2g03250 FvH4_2g03260 FvH4_2g03280 FvH4_2g03282 FvH4_2g03300 FvH4_2g17430 FvH4_3g07860
malus_domestica MD05G1106600.v1.1 MD10G1111000.v1.1 MD10G1111100.v1.1 MD10G1111300.v1.1 MD15G1305500.v1.1 MD15G1357700.v1.1 MD16G1086200.v1.1
prunus_persica Prupe.1G505100_v2.0.a1 Prupe.1G505200_v2.0.a1 Prupe.6G211600_v2.0.a1 Prupe.8G150600_v2.0.a1 Prupe.8G150700_v2.0.a1 Prupe.8G185900_v2.0.a1 Prupe.8G186000_v2.0.a1 Prupe.8G186100_v2.0.a1 Prupe.8G186200_v2.0.a1 Prupe.I000900_v2.0.a1 Prupe.I001000_v2.0.a1
pyrus_communis pycom10g09600 pycom10g09610 pycom10g09620 pycom15g31960
rosa_chinensis RchiOBHm_Chr6g0248151 RchiOBHm_Chr6g0248201 RchiOBHm_Chr6g0248231 RchiOBHm_Chr6g0248251 RchiOBHm_Chr6g0248261 RchiOBHm_Chr6g0248271 RchiOBHm_Chr6g0248321 RchiOBHm_Chr6g0248331 RchiOBHm_Chr6g0248381 RchiOBHm_Chr6g0248391 RchiOBHm_Chr6g0248401 RchiOBHm_Chr6g0248411 RchiOBHm_Chr6g0248421 RchiOBHm_Chr6g0282101 RchiOBHm_Chr6g0282111
rosa_laevigata RLG00000012908 RLG00000012910 RLG00000015155 RLG00000015156 RLG00000015157 RLG00000015158 RLG00000015159 RLG00000015162
rosa_multiflora Rmu_co8202196.1_g000001 Rmu_co8203792.1_g000001 Rmu_co8228231.1_g000001 Rmu_co8347131.1_g000001 Rmu_sc0000569.1_g000027 Rmu_sc0001700.1_g000052 Rmu_sc0002553.1_g000004 Rmu_sc0002553.1_g000005 Rmu_sc0004210.1_g000002 Rmu_sc0004295.1_g000009 Rmu_sc0004295.1_g000028 Rmu_sc0004295.1_g000034 Rmu_sc0005018.1_g000004 Rmu_sc0005018.1_g000007 Rmu_sc0015195.1_g000002 Rmu_sc0017247.1_g000001 Rmu_sc0041438.1_g000001
rosa_roxburghii Rroxscaffold_7G00186520 Rroxscaffold_7G00186550 Rroxscaffold_7G00213300 Rroxscaffold_7G00213340 Rroxscaffold_7G00213380 Rroxscaffold_7G00213400 Rroxscaffold_7G00213450
rosa_rugosa Rorug05G0530300 Rorug05G0531000 Rorug05G0531100 Rorug05G0552500 Rorug05G0552500 Rorug06G0145500
rosa_samantha Rh2AG004400 Rh6AG045600 Rh6AG045900 Rh6AG046200 Rh6AG046500 Rh6AG046700 Rh6AG258500 Rh6BG041200 Rh6BG041600 Rh6BG041700 Rh6BG041900 Rh6BG042000 Rh6BG042500 Rh6BG043000 Rh6BG043100 Rh6BG043200 Rh6BG043300 Rh6BG043400 Rh6BG261900 Rh6CG038700 Rh6CG038900 Rh6CG039100 Rh6CG039400 Rh6CG039700 Rh6CG039800 Rh6CG039900 Rh6CG040000 Rh6CG040100 Rh6CG260800
rosa_wichuraiana Rw6G003950 Rw6G003970 Rw6G003980 Rw6G004010 Rw6G004050 Rw6G004060 Rw6G004070 Rw6G004080 Rw6G022370 Rw6G022380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 322, 545
AclWI GGATC 3 cut(s) 222, 235, 461
AcsI RAATTY 2 cut(s) 446, 557
AfiI CCNNNNNNNGG 2 cut(s) 116, 328
AgsI TTSAA 3 cut(s) 140, 319, 529
AhdI GACNNNNNGTC 1 cut(s) 173
AluBI AGCT 6 cut(s) 27, 86, 151, 358, 378, 532
AluI AGCT 6 cut(s) 27, 86, 151, 358, 378, 532
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 3 cut(s) 222, 235, 461
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 1 cut(s) 118
ApoI RAATTY 2 cut(s) 446, 557
AspS9I GGNCC 2 cut(s) 338, 426
AsuHPI GGTGA 3 cut(s) 146, 178, 559
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 2 cut(s) 338, 426
AxyI CCTNAGG 1 cut(s) 362
BamHI GGATCC 1 cut(s) 227
BccI CCATC 3 cut(s) 59, 165, 260
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 5
Bme18I GGWCC 2 cut(s) 338, 426
BmeRI GACNNNNNGTC 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 2 cut(s) 338, 426
BmiI GGNNCC 2 cut(s) 229, 340
BmrI ACTGGG 2 cut(s) 383, 472
BmsI GCATC 1 cut(s) 400
BmuI ACTGGG 2 cut(s) 383, 472
BpmI CTGGAG 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 3 cut(s) 115, 422, 429
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 328
Bse1I ACTGG 3 cut(s) 231, 389, 478
Bse21I CCTNAGG 1 cut(s) 362
BseDI CCNNGG 3 cut(s) 115, 422, 429
BseGI GGATG 2 cut(s) 375, 439
BseLI CCNNNNNNNGG 2 cut(s) 116, 328
BseNI ACTGG 3 cut(s) 231, 389, 478
BseRI GAGGAG 1 cut(s) 191
BshFI GGCC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 2 cut(s) 116, 328
BsmAI GTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 324
BsmI GAATGC 1 cut(s) 413
BsnI GGCC 1 cut(s) 120
Bso31I GGTCTC 1 cut(s) 248
BsoBI CYCGRG 1 cut(s) 251
Bsp143I GATC 2 cut(s) 227, 453
BspACI CCGC 2 cut(s) 322, 545
BspANI GGCC 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 229, 340
BspPI GGATC 3 cut(s) 222, 235, 461
BspTNI GGTCTC 1 cut(s) 248
BsrI ACTGG 3 cut(s) 231, 389, 478
BssECI CCNNGG 3 cut(s) 115, 422, 429
BssMI GATC 2 cut(s) 227, 453
BssT1I CCWWGG 3 cut(s) 115, 422, 429
Bst4CI ACNGT 2 cut(s) 22, 525
BstDEI CTNAG 2 cut(s) 354, 362
BstEII GGTNACC 1 cut(s) 184
BstF5I GGATG 2 cut(s) 375, 439
BstKTI GATC 2 cut(s) 230, 456
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 2 cut(s) 227, 453
BstPI GGTNACC 1 cut(s) 184
BstX2I RGATCY 2 cut(s) 227, 453
BstYI RGATCY 2 cut(s) 227, 453
Bsu36I CCTNAGG 1 cut(s) 362
BsuRI GGCC 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 229
BtsCI GGATG 2 cut(s) 375, 439
Cfr13I GGNCC 2 cut(s) 338, 426
CseI GACGC 1 cut(s) 317
CviAII CATG 5 cut(s) 48, 133, 221, 418, 509
CviJI RGCY 9 cut(s) 27, 86, 120, 151, 270, 358, 378, 464, 532
CviKI_1 RGCY 9 cut(s) 27, 86, 120, 151, 270, 358, 378, 464, 532
DdeI CTNAG 2 cut(s) 354, 362
DpnI GATC 2 cut(s) 229, 455
DpnII GATC 2 cut(s) 227, 453
DriI GACNNNNNGTC 1 cut(s) 173
Eam1105I GACNNNNNGTC 1 cut(s) 173
Eco130I CCWWGG 3 cut(s) 115, 422, 429
Eco31I GGTCTC 1 cut(s) 248
Eco47I GGWCC 2 cut(s) 338, 426
Eco81I CCTNAGG 1 cut(s) 362
Eco88I CYCGRG 1 cut(s) 251
Eco91I GGTNACC 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 338
EcoO65I GGTNACC 1 cut(s) 184
EcoT14I CCWWGG 3 cut(s) 115, 422, 429
EcoT22I ATGCAT 1 cut(s) 415
ErhI CCWWGG 3 cut(s) 115, 422, 429
FaeI CATG 5 cut(s) 51, 136, 224, 421, 512
FaiI YATR 9 cut(s) 13, 44, 49, 123, 134, 222, 408, 419, 510
FaqI GGGAC 1 cut(s) 324
FatI CATG 5 cut(s) 47, 132, 220, 417, 508
FokI GGATG 2 cut(s) 382, 446
FspBI CTAG 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 1 cut(s) 120
HgaI GACGC 1 cut(s) 317
Hin1II CATG 5 cut(s) 51, 136, 224, 421, 512
HindIII AAGCTT 3 cut(s) 25, 149, 530
HinfI GANTC 1 cut(s) 168
HphI GGTGA 3 cut(s) 146, 178, 559
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 2 cut(s) 265, 382
Hpy188III TCNNGA 2 cut(s) 33, 253
Hpy8I GTNNAC 1 cut(s) 53
HpyCH4III ACNGT 2 cut(s) 22, 525
HpyCH4V TGCA 3 cut(s) 240, 290, 413
HpyF3I CTNAG 2 cut(s) 354, 362
Hsp92II CATG 5 cut(s) 51, 136, 224, 421, 512
Kzo9I GATC 2 cut(s) 227, 453
LmnI GCTCC 1 cut(s) 363
LpnPI CCDG 6 cut(s) 18, 210, 244, 388, 402, 491
LweI GCATC 1 cut(s) 400
MaeI CTAG 1 cut(s) 5
MaeIII GTNAC 2 cut(s) 175, 184
MalI GATC 2 cut(s) 229, 455
MboI GATC 2 cut(s) 227, 453
MflI RGATCY 2 cut(s) 227, 453
MluCI AATT 3 cut(s) 140, 446, 557
MlyI GAGTC 1 cut(s) 162
MmeI TCCRAC 2 cut(s) 134, 472
MnlI CCTC 6 cut(s) 212, 260, 271, 275, 360, 546
Mph1103I ATGCAT 1 cut(s) 415
MseI TTAA 2 cut(s) 17, 350
Mva1269I GAATGC 1 cut(s) 413
NdeII GATC 2 cut(s) 227, 453
NlaIII CATG 5 cut(s) 51, 136, 224, 421, 512
NlaIV GGNNCC 2 cut(s) 229, 340
NmuCI GTSAC 2 cut(s) 175, 184
NsiI ATGCAT 1 cut(s) 415
PaeR7I CTCGAG 1 cut(s) 251
PctI GAATGC 1 cut(s) 413
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PpuMI RGGWCCY 1 cut(s) 338
Psp5II RGGWCCY 1 cut(s) 338
PspEI GGTNACC 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 229, 340
PspPI GGNCC 2 cut(s) 338, 426
PspPPI RGGWCCY 1 cut(s) 338
PsuI RGATCY 2 cut(s) 227, 453
SaqAI TTAA 2 cut(s) 17, 350
Sau3AI GATC 2 cut(s) 227, 453
Sau96I GGNCC 2 cut(s) 338, 426
SchI GAGTC 1 cut(s) 162
SfaNI GCATC 1 cut(s) 400
Sfr274I CTCGAG 1 cut(s) 251
SinI GGWCC 2 cut(s) 338, 426
SlaI CTCGAG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 3 cut(s) 140, 446, 557
SsiI CCGC 2 cut(s) 322, 545
SspI AATATT 1 cut(s) 499
SspMI CTAG 1 cut(s) 5
StyI CCWWGG 3 cut(s) 115, 422, 429
TaaI ACNGT 2 cut(s) 22, 525
TaqI TCGA 1 cut(s) 252
TasI AATT 3 cut(s) 140, 446, 557
Tru1I TTAA 2 cut(s) 17, 350
Tru9I TTAA 2 cut(s) 17, 350
TseFI GTSAC 2 cut(s) 175, 184
Tsp45I GTSAC 2 cut(s) 175, 184
TspDTI ATGAA 1 cut(s) 406
VpaK11BI GGWCC 2 cut(s) 338, 426
XapI RAATTY 2 cut(s) 446, 557
XhoI CTCGAG 1 cut(s) 251
XspI CTAG 1 cut(s) 5
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.