Rh6CG038900

UDP-glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000284
Physical Location & Seq
Forward (+)
3738822 .. 3739541
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG038900.1

Sequence Viewer

Length: 720 bp
ATGTCGAAGCTTTGGCCATTGAAGACAATAGGACCAACCATACCATCCATGTACTTGGATAGCCGACTTAAAGAGGACAAAGATTATGGTGTCAGTCTCTTCAAGCAAAATAATGATGCCTGCATGAAATGGCTCAATGAACAACCGAAGGTGTCTGTTGTTTATGTGTCATTTGGTAGTGGAGCAGAACTTGGAGCTGAGCAAATGGAGGAACTGGCTTGGGGATTGAGGAGTAGCAAAAGCAATTTCTTGTGGGTGGTTAGGGAATCAGAAGCGGGTAAGATCCCGAAAGGGTTTGTGGAGGAGACATCTGAGAAGGGTTTGGTAGTCTCTTGGTGTCCCCAACTGGAGGTCTTGTCTCATGAAGCTGTTGGGTGCTTCATTACACATTGTGGTTGGAACTCTACATTGGAGGCTTTGAGTCTAGGGGTTCCAATGCTGGCAGTGCCACAATGGACTGACCAAGGCACCAATGCCAAGTACATTGTGGATGTGTGGAAAATTGGACTTAAAGCTTTAGCTGATGAGAAAGGAATTGTAAGGAAAGATGTGGTTGAGCATTGTATAATTGAAATAATGGAAGGAGAGACAGGGAAAGAGAGTCGAAGGAACGCTATGAAATGGAAGCAAGTGGCTAGAAAGTCTACGGATGAGGGTGGAAGTTCTGACAAAAACATTGGTGAGTTCATCGCAAAAGTAGTACAGCATGTGCAGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

239

Amino Acids

26.63

Weight (kDa)

5.9

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 50 - 206 1.9e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05675 AT1G05680
fragaria_vesca FvH4_2g03180 FvH4_2g03250 FvH4_2g03250 FvH4_2g03260 FvH4_2g03280 FvH4_2g03282 FvH4_2g03300 FvH4_2g17430 FvH4_3g07860
malus_domestica MD05G1106600.v1.1 MD10G1111000.v1.1 MD10G1111100.v1.1 MD10G1111300.v1.1 MD15G1305500.v1.1 MD15G1357700.v1.1 MD16G1086200.v1.1
prunus_persica Prupe.1G505100_v2.0.a1 Prupe.1G505200_v2.0.a1 Prupe.6G211600_v2.0.a1 Prupe.8G150600_v2.0.a1 Prupe.8G150700_v2.0.a1 Prupe.8G185900_v2.0.a1 Prupe.8G186000_v2.0.a1 Prupe.8G186100_v2.0.a1 Prupe.8G186200_v2.0.a1 Prupe.I000900_v2.0.a1 Prupe.I001000_v2.0.a1
pyrus_communis pycom10g09600 pycom10g09610 pycom10g09620 pycom15g31960
rosa_chinensis RchiOBHm_Chr6g0248151 RchiOBHm_Chr6g0248201 RchiOBHm_Chr6g0248231 RchiOBHm_Chr6g0248251 RchiOBHm_Chr6g0248261 RchiOBHm_Chr6g0248271 RchiOBHm_Chr6g0248321 RchiOBHm_Chr6g0248331 RchiOBHm_Chr6g0248381 RchiOBHm_Chr6g0248391 RchiOBHm_Chr6g0248401 RchiOBHm_Chr6g0248411 RchiOBHm_Chr6g0248421 RchiOBHm_Chr6g0282101 RchiOBHm_Chr6g0282111
rosa_laevigata RLG00000012908 RLG00000012910 RLG00000015155 RLG00000015156 RLG00000015157 RLG00000015158 RLG00000015159 RLG00000015162
rosa_multiflora Rmu_co8202196.1_g000001 Rmu_co8203792.1_g000001 Rmu_co8228231.1_g000001 Rmu_co8347131.1_g000001 Rmu_sc0000569.1_g000027 Rmu_sc0001700.1_g000052 Rmu_sc0002553.1_g000004 Rmu_sc0002553.1_g000005 Rmu_sc0004210.1_g000002 Rmu_sc0004295.1_g000009 Rmu_sc0004295.1_g000028 Rmu_sc0004295.1_g000034 Rmu_sc0005018.1_g000004 Rmu_sc0005018.1_g000007 Rmu_sc0015195.1_g000002 Rmu_sc0017247.1_g000001 Rmu_sc0041438.1_g000001
rosa_roxburghii Rroxscaffold_7G00186520 Rroxscaffold_7G00186550 Rroxscaffold_7G00213300 Rroxscaffold_7G00213340 Rroxscaffold_7G00213380 Rroxscaffold_7G00213400 Rroxscaffold_7G00213450
rosa_rugosa Rorug05G0530300 Rorug05G0531000 Rorug05G0531100 Rorug05G0552500 Rorug05G0552500 Rorug06G0145500
rosa_samantha Rh2AG004400 Rh6AG045600 Rh6AG045900 Rh6AG046200 Rh6AG046500 Rh6AG046700 Rh6AG258500 Rh6BG041200 Rh6BG041600 Rh6BG041700 Rh6BG041900 Rh6BG042000 Rh6BG042500 Rh6BG043000 Rh6BG043100 Rh6BG043200 Rh6BG043300 Rh6BG043400 Rh6BG261900 Rh6CG038700 Rh6CG038900 Rh6CG039100 Rh6CG039400 Rh6CG039700 Rh6CG039800 Rh6CG039900 Rh6CG040000 Rh6CG040100 Rh6CG260800
rosa_wichuraiana Rw6G003950 Rw6G003970 Rw6G003980 Rw6G004010 Rw6G004050 Rw6G004060 Rw6G004070 Rw6G004080 Rw6G022370 Rw6G022380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 467
AccI GTMKAC 1 cut(s) 644
AciI CCGC 1 cut(s) 275
AclWI GGATC 1 cut(s) 277
AcoI YGGCCR 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 392
AfaI GTAC 3 cut(s) 53, 482, 702
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 3 cut(s) 22, 103, 572
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 5 cut(s) 10, 197, 368, 515, 521
AluI AGCT 5 cut(s) 10, 197, 368, 515, 521
Alw26I GTCTC 5 cut(s) 101, 299, 334, 363, 581
AlwI GGATC 1 cut(s) 277
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 712
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 692
AvaII GGWCC 1 cut(s) 32
BalI TGGCCA 1 cut(s) 16
BanI GGYRCC 1 cut(s) 467
BbsI GAAGAC 1 cut(s) 29
BccI CCATC 1 cut(s) 52
BcoDI GTCTC 5 cut(s) 101, 299, 334, 363, 581
BfaI CTAG 3 cut(s) 425, 636, 718
BisI GCNGC 1 cut(s) 713
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 714
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 432, 469
BmsI GCATC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 463
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 2 cut(s) 219, 351
BseDI CCNNGG 1 cut(s) 463
BseGI GGATG 3 cut(s) 44, 496, 655
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 2 cut(s) 189, 303
BseNI ACTGG 2 cut(s) 219, 351
BseRI GAGGAG 2 cut(s) 244, 317
BshFI GGCC 1 cut(s) 16
BshNI GGYRCC 1 cut(s) 467
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 5 cut(s) 101, 299, 334, 363, 581
BsmFI GGGAC 1 cut(s) 324
BsnI GGCC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 282
Bsp1720I GCTNAGC 1 cut(s) 198
BspACI CCGC 1 cut(s) 275
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 2 cut(s) 190, 304
BspHI TCATGA 1 cut(s) 361
BspLI GGNNCC 2 cut(s) 432, 469
BspPI GGATC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 467
BsrI ACTGG 2 cut(s) 219, 351
BssECI CCNNGG 1 cut(s) 463
BssMI GATC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 463
Bst6I CTCTTC 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 121, 441
BstDEI CTNAG 2 cut(s) 198, 312
BstF5I GGATG 3 cut(s) 44, 496, 655
BstKTI GATC 1 cut(s) 285
BstMAI GTCTC 5 cut(s) 101, 299, 334, 363, 581
BstMBI GATC 1 cut(s) 282
BstMWI GCNNNNNNNGC 2 cut(s) 445, 712
BstNSI RCATGY 1 cut(s) 710
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 282
BstXI CCANNNNNNTGG 1 cut(s) 55
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 673
BtsCI GGATG 3 cut(s) 44, 496, 655
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 2 cut(s) 121, 441
CciI TCATGA 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 32
Csp6I GTAC 3 cut(s) 52, 481, 701
CviAII CATG 4 cut(s) 49, 124, 362, 707
CviQI GTAC 3 cut(s) 52, 481, 701
DdeI CTNAG 2 cut(s) 198, 312
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
DraIII CACNNNGTG 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 14
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 463
FaeI CATG 4 cut(s) 52, 127, 365, 710
FaiI YATR 9 cut(s) 41, 50, 87, 125, 165, 363, 566, 617, 708
FaqI GGGAC 1 cut(s) 324
FatI CATG 4 cut(s) 48, 123, 361, 706
FauI CCCGC 1 cut(s) 268
FblI GTMKAC 1 cut(s) 644
Fnu4HI GCNGC 1 cut(s) 713
FokI GGATG 3 cut(s) 31, 503, 662
Fsp4HI GCNGC 1 cut(s) 713
FspBI CTAG 3 cut(s) 425, 636, 718
GluI GCNGC 1 cut(s) 713
GsuI CTGGAG 1 cut(s) 368
HaeIII GGCC 1 cut(s) 16
Hin1II CATG 4 cut(s) 52, 127, 365, 710
HindIII AAGCTT 2 cut(s) 8, 513
HinfI GANTC 3 cut(s) 266, 421, 601
HphI GGTGA 1 cut(s) 692
Hpy166II GTNNAC 1 cut(s) 645
Hpy188I TCNGA 3 cut(s) 271, 313, 667
Hpy188III TCNNGA 2 cut(s) 286, 362
Hpy8I GTNNAC 1 cut(s) 645
HpyAV CCTTC 4 cut(s) 142, 310, 575, 600
HpyCH4V TGCA 2 cut(s) 123, 712
HpyF10VI GCNNNNNNNGC 2 cut(s) 445, 712
HpyF3I CTNAG 2 cut(s) 198, 312
Hsp92II CATG 4 cut(s) 52, 127, 365, 710
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 2 cut(s) 182, 194
LpnPI CCDG 5 cut(s) 133, 200, 332, 425, 576
LweI GCATC 1 cut(s) 106
MaeI CTAG 3 cut(s) 425, 636, 718
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 2 cut(s) 34, 91
MflI RGATCY 1 cut(s) 282
MlsI TGGCCA 1 cut(s) 16
MluCI AATT 4 cut(s) 244, 501, 534, 567
MluNI TGGCCA 1 cut(s) 16
MlyI GAGTC 2 cut(s) 430, 610
MmeI TCCRAC 1 cut(s) 377
MnlI CCTC 7 cut(s) 67, 202, 222, 295, 343, 406, 646
Mox20I TGGCCA 1 cut(s) 16
MscI TGGCCA 1 cut(s) 16
MseI TTAA 2 cut(s) 69, 510
Msp20I TGGCCA 1 cut(s) 16
MwoI GCNNNNNNNGC 2 cut(s) 445, 712
NdeII GATC 1 cut(s) 282
NlaIII CATG 4 cut(s) 52, 127, 365, 710
NlaIV GGNNCC 2 cut(s) 432, 469
NspI RCATGY 1 cut(s) 710
PagI TCATGA 1 cut(s) 361
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 714
PleI GAGTC 2 cut(s) 429, 609
PpsI GAGTC 2 cut(s) 429, 609
PspN4I GGNNCC 2 cut(s) 432, 469
PspPI GGNCC 1 cut(s) 32
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 3 cut(s) 53, 482, 702
RsaNI GTAC 3 cut(s) 52, 481, 701
SaqAI TTAA 2 cut(s) 69, 510
SatI GCNGC 1 cut(s) 713
Sau3AI GATC 1 cut(s) 282
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 2 cut(s) 430, 610
SetI ASST 7 cut(s) 12, 153, 199, 354, 370, 517, 523
SfaNI GCATC 1 cut(s) 106
SinI GGWCC 1 cut(s) 32
Sse9I AATT 4 cut(s) 244, 501, 534, 567
SsiI CCGC 1 cut(s) 275
SspMI CTAG 3 cut(s) 425, 636, 718
StyI CCWWGG 1 cut(s) 463
TaqI TCGA 2 cut(s) 5, 604
TasI AATT 4 cut(s) 244, 501, 534, 567
TatI WGTACW 3 cut(s) 51, 480, 700
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 2 cut(s) 69, 510
Tru9I TTAA 2 cut(s) 69, 510
TscAI CASTG 1 cut(s) 450
TseI GCWGC 1 cut(s) 712
TspDTI ATGAA 6 cut(s) 140, 153, 370, 378, 632, 676
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 32
XceI RCATGY 1 cut(s) 710
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 644
XspI CTAG 3 cut(s) 425, 636, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.