Rmu_sc0004295.1_g000028

UDP-glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004295.1
OG0000284
Physical Location & Seq
Reverse (-)
139793 .. 141191
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004295.1_g000028.1.cds

Sequence Viewer

Length: 1014 bp
atgcacaggtcggggtccaggcgtattccactggagatgatctctggtggttatgatgaaggtaagagagcacaagcagaaagcatagatgtctatttggagagcttgaggaaatcagggtcacaaactttggctgagcttgttgagaagctttcaagctcagggttaccatcttgtgctgttgacaccatctactaccatgtgaaaaatggattgctgaaacttcctattgttgagtctgaaatatcgcttcctgggttgccgacgcttaagacctcagacctgccatcctttctatctgatttcgggtcttacccggccgcctataaattggcggtggattggatgacaaagatttggccaatgaagaccattggaccaactataccatctcaatacttggataagcgtcttgaagatgataaagactatggtttcaacatgtttaaaccaaagagtgatgcctgcatgaaatggctcaatgaacagccaaaggggtctattgtttatatgtcatttggcagccgagcacaaattgaagctgagcaaattgaggaactggcttttggattgaggagtagtagaagaaaattcttgtgggtgattagagaatcagaagcaaggaaggtcccgaaagggtttgtggaggagacatctgcaaagggttttgtggtttcctggtgtccacaactggaggttttggctcatgaagcagttggttgcttcattacacattgtggttggaactccacattggaggctttgagtttgggggttccaatggttgcaatgcctcgatggaccaaccaaagcaccaatgccaagtacattatggatgtgtggaaaattgggatcagagctcaagttgatgagaaagggattgtgaggcaagaagaagtagagcattgtgtaagtgaaatattggagggagagaggggaaatgaaatacaaaagaatgctatagcattgaaagaattggctagaaaggctgtggatgaagggtggaagttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

337

Amino Acids

37.91

Weight (kDa)

6.29

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05675 AT1G05680
fragaria_vesca FvH4_2g03180 FvH4_2g03250 FvH4_2g03250 FvH4_2g03260 FvH4_2g03280 FvH4_2g03282 FvH4_2g03300 FvH4_2g17430 FvH4_3g07860
malus_domestica MD05G1106600.v1.1 MD10G1111000.v1.1 MD10G1111100.v1.1 MD10G1111300.v1.1 MD15G1305500.v1.1 MD15G1357700.v1.1 MD16G1086200.v1.1
prunus_persica Prupe.1G505100_v2.0.a1 Prupe.1G505200_v2.0.a1 Prupe.6G211600_v2.0.a1 Prupe.8G150600_v2.0.a1 Prupe.8G150700_v2.0.a1 Prupe.8G185900_v2.0.a1 Prupe.8G186000_v2.0.a1 Prupe.8G186100_v2.0.a1 Prupe.8G186200_v2.0.a1 Prupe.I000900_v2.0.a1 Prupe.I001000_v2.0.a1
pyrus_communis pycom10g09600 pycom10g09610 pycom10g09620 pycom15g31960
rosa_chinensis RchiOBHm_Chr6g0248151 RchiOBHm_Chr6g0248201 RchiOBHm_Chr6g0248231 RchiOBHm_Chr6g0248251 RchiOBHm_Chr6g0248261 RchiOBHm_Chr6g0248271 RchiOBHm_Chr6g0248321 RchiOBHm_Chr6g0248331 RchiOBHm_Chr6g0248381 RchiOBHm_Chr6g0248391 RchiOBHm_Chr6g0248401 RchiOBHm_Chr6g0248411 RchiOBHm_Chr6g0248421 RchiOBHm_Chr6g0282101 RchiOBHm_Chr6g0282111
rosa_laevigata RLG00000012908 RLG00000012910 RLG00000015155 RLG00000015156 RLG00000015157 RLG00000015158 RLG00000015159 RLG00000015162
rosa_multiflora Rmu_co8202196.1_g000001 Rmu_co8203792.1_g000001 Rmu_co8228231.1_g000001 Rmu_co8347131.1_g000001 Rmu_sc0000569.1_g000027 Rmu_sc0001700.1_g000052 Rmu_sc0002553.1_g000004 Rmu_sc0002553.1_g000005 Rmu_sc0004210.1_g000002 Rmu_sc0004295.1_g000009 Rmu_sc0004295.1_g000028 Rmu_sc0004295.1_g000034 Rmu_sc0005018.1_g000004 Rmu_sc0005018.1_g000007 Rmu_sc0015195.1_g000002 Rmu_sc0017247.1_g000001 Rmu_sc0041438.1_g000001
rosa_roxburghii Rroxscaffold_7G00186520 Rroxscaffold_7G00186550 Rroxscaffold_7G00213300 Rroxscaffold_7G00213340 Rroxscaffold_7G00213380 Rroxscaffold_7G00213400 Rroxscaffold_7G00213450
rosa_rugosa Rorug05G0530300 Rorug05G0531000 Rorug05G0531100 Rorug05G0552500 Rorug05G0552500 Rorug06G0145500
rosa_samantha Rh2AG004400 Rh6AG045600 Rh6AG045900 Rh6AG046200 Rh6AG046500 Rh6AG046700 Rh6AG258500 Rh6BG041200 Rh6BG041600 Rh6BG041700 Rh6BG041900 Rh6BG042000 Rh6BG042500 Rh6BG043000 Rh6BG043100 Rh6BG043200 Rh6BG043300 Rh6BG043400 Rh6BG261900 Rh6CG038700 Rh6CG038900 Rh6CG039100 Rh6CG039400 Rh6CG039700 Rh6CG039800 Rh6CG039900 Rh6CG040000 Rh6CG040100 Rh6CG260800
rosa_wichuraiana Rw6G003950 Rw6G003970 Rw6G003980 Rw6G004010 Rw6G004050 Rw6G004060 Rw6G004070 Rw6G004080 Rw6G022370 Rw6G022380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 291
AciI CCGC 2 cut(s) 321, 335
AclWI GGATC 1 cut(s) 860
AcoI YGGCCR 2 cut(s) 318, 359
AcsI RAATTY 1 cut(s) 590
AdeI CACNNNGTG 1 cut(s) 737
AfaI GTAC 1 cut(s) 827
AflII CTTAAG 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 5 cut(s) 156, 416, 439, 539, 970
AjnI CCWGG 3 cut(s) 17, 253, 677
AjuI GAANNNNNNNTTGG 4 cut(s) 549, 581, 737, 769
AluBI AGCT 6 cut(s) 105, 139, 151, 159, 542, 860
AluI AGCT 6 cut(s) 105, 139, 151, 159, 542, 860
Alw21I GWGCWC 3 cut(s) 73, 532, 862
Alw26I GTCTC 1 cut(s) 644
AlwI GGATC 1 cut(s) 860
AoxI GGCC 2 cut(s) 318, 359
ApeKI GCWGC 1 cut(s) 522
ApoI RAATTY 1 cut(s) 590
AspS9I GGNCC 4 cut(s) 15, 377, 628, 801
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 613
AvaII GGWCC 4 cut(s) 15, 377, 628, 801
BalI TGGCCA 1 cut(s) 361
BanII GRGCYC 1 cut(s) 862
BbsI GAAGAC 1 cut(s) 374
Bbv12I GWGCWC 3 cut(s) 73, 532, 862
BbvI GCAGC 1 cut(s) 534
BccI CCATC 5 cut(s) 178, 197, 295, 397, 792
BciT130I CCWGG 3 cut(s) 19, 255, 679
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 644
BfaI CTAG 1 cut(s) 981
BfmI CTRYAG 1 cut(s) 960
BfrI CTTAAG 1 cut(s) 269
BfuAI ACCTGC 1 cut(s) 291
BisI GCNGC 2 cut(s) 321, 523
BlpI GCTNAGC 2 cut(s) 135, 543
BlsI GCNGC 2 cut(s) 322, 524
Bme1390I CCNGG 4 cut(s) 19, 255, 317, 679
Bme18I GGWCC 4 cut(s) 15, 377, 628, 801
BmgT120I GGNCC 4 cut(s) 15, 377, 628, 801
BmiI GGNNCC 3 cut(s) 16, 630, 777
BmrFI CCNGG 4 cut(s) 19, 255, 317, 679
BmsI GCATC 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 374
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpmI CTGGAG 2 cut(s) 53, 713
Bpu10I CCTNAGC 1 cut(s) 160
Bpu1102I GCTNAGC 2 cut(s) 135, 543
BpuEI CTTGAG 2 cut(s) 127, 846
BpuMI CCSGG 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 254
Bse1I ACTGG 3 cut(s) 36, 564, 696
Bse3DI GCAATG 1 cut(s) 795
BseBI CCWGG 3 cut(s) 19, 255, 679
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 4 cut(s) 287, 351, 841, 1000
BseMI GCAATG 1 cut(s) 795
BseMII CTCAG 4 cut(s) 126, 174, 291, 534
BseNI ACTGG 3 cut(s) 36, 564, 696
BseRI GAGGAG 2 cut(s) 589, 662
BseX3I CGGCCG 1 cut(s) 318
BseXI GCAGC 1 cut(s) 534
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 320, 361
BsiEI CGRYCG 1 cut(s) 321
BsiHKAI GWGCWC 3 cut(s) 73, 532, 862
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 1 cut(s) 614
BsmAI GTCTC 1 cut(s) 644
BsmFI GGGAC 1 cut(s) 614
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 2 cut(s) 320, 361
Bsp1286I GDGCHC 3 cut(s) 73, 532, 862
Bsp143I GATC 2 cut(s) 39, 852
Bsp1720I GCTNAGC 2 cut(s) 135, 543
BspACI CCGC 2 cut(s) 321, 335
BspANI GGCC 2 cut(s) 320, 361
BspCNI CTCAG 4 cut(s) 127, 173, 290, 535
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 3 cut(s) 16, 630, 777
BspMI ACCTGC 1 cut(s) 291
BspPI GGATC 1 cut(s) 860
BspTI CTTAAG 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 795
BsrI ACTGG 3 cut(s) 36, 564, 696
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 2 cut(s) 39, 852
Bst2UI CCWGG 3 cut(s) 19, 255, 679
BstAFI CTTAAG 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 4 cut(s) 135, 160, 277, 543
BstEII GGTNACC 1 cut(s) 165
BstF5I GGATG 4 cut(s) 287, 351, 841, 1000
BstKTI GATC 2 cut(s) 42, 855
BstMAI GTCTC 1 cut(s) 644
BstMBI GATC 2 cut(s) 39, 852
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 2 cut(s) 710, 986
BstNI CCWGG 3 cut(s) 19, 255, 679
BstNSI RCATGY 1 cut(s) 445
BstPI GGTNACC 1 cut(s) 165
BstSCI CCNGG 4 cut(s) 17, 253, 315, 677
BstSFI CTRYAG 1 cut(s) 960
BstV1I GCAGC 1 cut(s) 534
BstV2I GAAGAC 1 cut(s) 374
BstZI CGGCCG 1 cut(s) 318
BsuRI GGCC 2 cut(s) 320, 361
BtsCI GGATG 4 cut(s) 287, 351, 841, 1000
BtsIMutI CAGTG 1 cut(s) 29
BveI ACCTGC 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 466
CciI TCATGA 1 cut(s) 706
Cfr13I GGNCC 4 cut(s) 15, 377, 628, 801
CseI GACGC 2 cut(s) 274, 398
Csp6I GTAC 1 cut(s) 826
CviAII CATG 4 cut(s) 200, 442, 469, 707
CviQI GTAC 1 cut(s) 826
DdeI CTNAG 4 cut(s) 135, 160, 277, 543
DpnI GATC 2 cut(s) 41, 854
DpnII GATC 2 cut(s) 39, 852
DraI TTTAAA 1 cut(s) 448
DraIII CACNNNGTG 1 cut(s) 737
EaeI YGGCCR 2 cut(s) 318, 359
EagI CGGCCG 1 cut(s) 318
Ecl136II GAGCTC 1 cut(s) 860
EclXI CGGCCG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 862
Eco47I GGWCC 4 cut(s) 15, 377, 628, 801
Eco52I CGGCCG 1 cut(s) 318
Eco53kI GAGCTC 1 cut(s) 860
Eco91I GGTNACC 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 860
EcoO109I RGGNCCY 1 cut(s) 628
EcoO65I GGTNACC 1 cut(s) 165
EcoRII CCWGG 3 cut(s) 17, 253, 677
EcoT38I GRGCYC 1 cut(s) 862
FaeI CATG 4 cut(s) 203, 445, 472, 710
FaqI GGGAC 1 cut(s) 614
FatI CATG 4 cut(s) 199, 441, 468, 706
Fnu4HI GCNGC 2 cut(s) 321, 523
FokI GGATG 4 cut(s) 274, 358, 848, 1007
FriOI GRGCYC 1 cut(s) 862
Fsp4HI GCNGC 2 cut(s) 321, 523
FspBI CTAG 1 cut(s) 981
GluI GCNGC 2 cut(s) 321, 523
GsuI CTGGAG 2 cut(s) 53, 713
HaeIII GGCC 2 cut(s) 320, 361
HapII CCGG 1 cut(s) 317
HgaI GACGC 2 cut(s) 274, 398
Hin1II CATG 4 cut(s) 203, 445, 472, 710
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 2 cut(s) 236, 611
HpaII CCGG 1 cut(s) 317
HphI GGTGA 1 cut(s) 613
Hpy166II GTNNAC 2 cut(s) 184, 686
Hpy188I TCNGA 5 cut(s) 241, 280, 301, 616, 857
Hpy188III TCNNGA 3 cut(s) 413, 631, 707
Hpy8I GTNNAC 2 cut(s) 184, 686
Hpy99I CGWCG 1 cut(s) 268
HpyAV CCTTC 3 cut(s) 53, 619, 992
HpyCH4V TGCA 4 cut(s) 4, 468, 659, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 710, 986
HpyF3I CTNAG 4 cut(s) 135, 160, 277, 543
Hsp92II CATG 4 cut(s) 203, 445, 472, 710
Kzo9I GATC 2 cut(s) 39, 852
Lsp1109I GCAGC 1 cut(s) 534
LweI GCATC 1 cut(s) 451
MaeI CTAG 1 cut(s) 981
MaeIII GTNAC 2 cut(s) 120, 165
MalI GATC 2 cut(s) 41, 854
MboI GATC 2 cut(s) 39, 852
MboII GAAGA 4 cut(s) 379, 428, 597, 905
MhlI GDGCHC 3 cut(s) 73, 532, 862
MlsI TGGCCA 1 cut(s) 361
MluCI AATT 6 cut(s) 329, 534, 549, 590, 846, 974
MluNI TGGCCA 1 cut(s) 361
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 722
Mox20I TGGCCA 1 cut(s) 361
MscI TGGCCA 1 cut(s) 361
MseI TTAA 2 cut(s) 270, 447
Msp20I TGGCCA 1 cut(s) 361
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 4 cut(s) 19, 255, 317, 679
MssI GTTTAAAC 1 cut(s) 448
Mva1269I GAATGC 1 cut(s) 961
MvaI CCWGG 3 cut(s) 19, 255, 679
MwoI GCNNNNNNNGC 2 cut(s) 710, 986
NciI CCSGG 1 cut(s) 317
NdeII GATC 2 cut(s) 39, 852
NlaIII CATG 4 cut(s) 203, 445, 472, 710
NlaIV GGNNCC 3 cut(s) 16, 630, 777
NmeAIII GCCGAG 1 cut(s) 551
NmuCI GTSAC 1 cut(s) 120
NspI RCATGY 1 cut(s) 445
PagI TCATGA 1 cut(s) 706
PciI ACATGT 1 cut(s) 441
PctI GAATGC 1 cut(s) 961
PfeI GAWTC 1 cut(s) 611
PkrI GCNGC 2 cut(s) 322, 524
PleI GAGTC 1 cut(s) 244
PmeI GTTTAAAC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 244
PpuMI RGGWCCY 1 cut(s) 628
PscI ACATGT 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 862
Psp5II RGGWCCY 1 cut(s) 628
Psp6I CCWGG 3 cut(s) 17, 253, 677
PspEI GGTNACC 1 cut(s) 165
PspGI CCWGG 3 cut(s) 17, 253, 677
PspN4I GGNNCC 3 cut(s) 16, 630, 777
PspPI GGNCC 4 cut(s) 15, 377, 628, 801
PspPPI RGGWCCY 1 cut(s) 628
RsaI GTAC 1 cut(s) 827
RsaNI GTAC 1 cut(s) 826
SacI GAGCTC 1 cut(s) 862
SaqAI TTAA 2 cut(s) 270, 447
SatI GCNGC 2 cut(s) 321, 523
Sau3AI GATC 2 cut(s) 39, 852
Sau96I GGNCC 4 cut(s) 15, 377, 628, 801
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 4 cut(s) 19, 255, 317, 679
SduI GDGCHC 3 cut(s) 73, 532, 862
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 1 cut(s) 960
SinI GGWCC 4 cut(s) 15, 377, 628, 801
SmlI CTYRAG 3 cut(s) 106, 269, 861
SmoI CTYRAG 3 cut(s) 106, 269, 861
Sse9I AATT 6 cut(s) 329, 534, 549, 590, 846, 974
SsiI CCGC 2 cut(s) 321, 335
SspI AATATT 1 cut(s) 921
SspMI CTAG 1 cut(s) 981
SstI GAGCTC 1 cut(s) 862
StyD4I CCNGG 4 cut(s) 17, 253, 315, 677
TaqI TCGA 1 cut(s) 796
TasI AATT 6 cut(s) 329, 534, 549, 590, 846, 974
TatI WGTACW 1 cut(s) 825
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 2 cut(s) 270, 447
Tru9I TTAA 2 cut(s) 270, 447
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 1 cut(s) 120
TseI GCWGC 1 cut(s) 522
Tsp45I GTSAC 1 cut(s) 120
TspDTI ATGAA 8 cut(s) 72, 380, 485, 498, 715, 723, 957, 1011
TspRI CASTG 1 cut(s) 36
Vha464I CTTAAG 1 cut(s) 269
VpaK11BI GGWCC 4 cut(s) 15, 377, 628, 801
XapI RAATTY 1 cut(s) 590
XceI RCATGY 1 cut(s) 445
XcmI CCANNNNNNNNNTGG 2 cut(s) 206, 829
XspI CTAG 1 cut(s) 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.