Rh6CG040000

UDP-glycosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
3877915 .. 3893815
15901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG040000.1

Sequence Viewer

Length: 732 bp
ATGGAAGAGGTGGTGGATTGGATGGCAGAGTTTTGGCCACTGAGGACCATTGGACCAACTATACCATCTAACTACTTGGATAACCTACTTGAAGACGACAAAGATTACGGTGTTGACCTCTTTAAATCCAACAATGATGCCTGCATGAAATGGTTAAACGAACTTCAAAAGAACTCTGTTGCTTACATCTCATTCGGCAGCGCTGCAGAATTGGGACTTGAGCAAATGGAGGAACTGGCATGGGGTTTGAGGAGAAGCAAAAGCAAGTTCTTGTGGGTGGTTAGAGAATCAGAAGCAGCTAAAGTCCCCAAAGGGTTCATCGAGGAGACAGCTGAGAAGGGTTTGGTAGTTCCATGGTGCTCCCAACTAGAGGTTTTGGCTCATGAAGCTGTTGGGTGCTTCATTACACATTGTGGTTGGAACTCAACTTTGGAGTCTCTGAGTTTGGGAGTTCCATTAGTGGCAATGCCACAATGGACTGACCAAAGCACCAATGCCAAGTACATTAGGGATGTGTGGAAAATAGGGGTTAAAGCTCAACCTGATGAGAAAGGCATCGTAAGGCGAGAAGAAGTAGAGCATTGTATAAGTGAAATCATGGAGGGGGAGAGAGGAAAAGAAATACAAAAGAATGCCATGAAATGGAAAGATTTGGCTAGAAAGGCAAAGATTGAAGGCGGAAGTTCCGACAAAAACATTGATGAGTTCATTGCAACGTTGGTTAAGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
Pfam Domains
Protein Families

Protein Analysis

243

Amino Acids

27.6

Weight (kDa)

5.07

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 50 - 216 1.8e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05675 AT1G05680
fragaria_vesca FvH4_2g03180 FvH4_2g03250 FvH4_2g03250 FvH4_2g03260 FvH4_2g03280 FvH4_2g03282 FvH4_2g03300 FvH4_2g17430 FvH4_3g07860
malus_domestica MD05G1106600.v1.1 MD10G1111000.v1.1 MD10G1111100.v1.1 MD10G1111300.v1.1 MD15G1305500.v1.1 MD15G1357700.v1.1 MD16G1086200.v1.1
prunus_persica Prupe.1G505100_v2.0.a1 Prupe.1G505200_v2.0.a1 Prupe.6G211600_v2.0.a1 Prupe.8G150600_v2.0.a1 Prupe.8G150700_v2.0.a1 Prupe.8G185900_v2.0.a1 Prupe.8G186000_v2.0.a1 Prupe.8G186100_v2.0.a1 Prupe.8G186200_v2.0.a1 Prupe.I000900_v2.0.a1 Prupe.I001000_v2.0.a1
pyrus_communis pycom10g09600 pycom10g09610 pycom10g09620 pycom15g31960
rosa_chinensis RchiOBHm_Chr6g0248151 RchiOBHm_Chr6g0248201 RchiOBHm_Chr6g0248231 RchiOBHm_Chr6g0248251 RchiOBHm_Chr6g0248261 RchiOBHm_Chr6g0248271 RchiOBHm_Chr6g0248321 RchiOBHm_Chr6g0248331 RchiOBHm_Chr6g0248381 RchiOBHm_Chr6g0248391 RchiOBHm_Chr6g0248401 RchiOBHm_Chr6g0248411 RchiOBHm_Chr6g0248421 RchiOBHm_Chr6g0282101 RchiOBHm_Chr6g0282111
rosa_laevigata RLG00000012908 RLG00000012910 RLG00000015155 RLG00000015156 RLG00000015157 RLG00000015158 RLG00000015159 RLG00000015162
rosa_multiflora Rmu_co8202196.1_g000001 Rmu_co8203792.1_g000001 Rmu_co8228231.1_g000001 Rmu_co8347131.1_g000001 Rmu_sc0000569.1_g000027 Rmu_sc0001700.1_g000052 Rmu_sc0002553.1_g000004 Rmu_sc0002553.1_g000005 Rmu_sc0004210.1_g000002 Rmu_sc0004295.1_g000009 Rmu_sc0004295.1_g000028 Rmu_sc0004295.1_g000034 Rmu_sc0005018.1_g000004 Rmu_sc0005018.1_g000007 Rmu_sc0015195.1_g000002 Rmu_sc0017247.1_g000001 Rmu_sc0041438.1_g000001
rosa_roxburghii Rroxscaffold_7G00186520 Rroxscaffold_7G00186550 Rroxscaffold_7G00213300 Rroxscaffold_7G00213340 Rroxscaffold_7G00213380 Rroxscaffold_7G00213400 Rroxscaffold_7G00213450
rosa_rugosa Rorug05G0530300 Rorug05G0531000 Rorug05G0531100 Rorug05G0552500 Rorug05G0552500 Rorug06G0145500
rosa_samantha Rh2AG004400 Rh6AG045600 Rh6AG045900 Rh6AG046200 Rh6AG046500 Rh6AG046700 Rh6AG258500 Rh6BG041200 Rh6BG041600 Rh6BG041700 Rh6BG041900 Rh6BG042000 Rh6BG042500 Rh6BG043000 Rh6BG043100 Rh6BG043200 Rh6BG043300 Rh6BG043400 Rh6BG261900 Rh6CG038700 Rh6CG038900 Rh6CG039100 Rh6CG039400 Rh6CG039700 Rh6CG039800 Rh6CG039900 Rh6CG040000 Rh6CG040100 Rh6CG260800
rosa_wichuraiana Rw6G003950 Rw6G003970 Rw6G003980 Rw6G004010 Rw6G004050 Rw6G004060 Rw6G004070 Rw6G004080 Rw6G022370 Rw6G022380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 642
AciI CCGC 1 cut(s) 678
AclI AACGTT 1 cut(s) 716
AcoI YGGCCR 1 cut(s) 35
AdeI CACNNNGTG 1 cut(s) 413
AfaI GTAC 1 cut(s) 503
AfeI AGCGCT 1 cut(s) 202
AfiI CCNNNNNNNGG 2 cut(s) 370, 642
AgsI TTSAA 3 cut(s) 92, 167, 674
AjuI GAANNNNNNNTTGG 2 cut(s) 413, 445
AluBI AGCT 4 cut(s) 299, 332, 389, 536
AluI AGCT 4 cut(s) 299, 332, 389, 536
Alw21I GWGCWC 1 cut(s) 362
Alw26I GTCTC 2 cut(s) 320, 441
Aor51HI AGCGCT 1 cut(s) 202
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 3 cut(s) 198, 203, 296
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 45, 53
AvaII GGWCC 2 cut(s) 45, 53
BalI TGGCCA 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 362
BbvI GCAGC 3 cut(s) 190, 210, 308
BccI CCATC 2 cut(s) 16, 73
BcoDI GTCTC 2 cut(s) 320, 441
BfaI CTAG 2 cut(s) 368, 657
BfmI CTRYAG 1 cut(s) 204
BfoI RGCGCY 1 cut(s) 204
BisI GCNGC 3 cut(s) 199, 204, 297
BlsI GCNGC 3 cut(s) 200, 205, 298
Bme18I GGWCC 2 cut(s) 45, 53
BmgT120I GGNCC 2 cut(s) 45, 53
BmsI GCATC 2 cut(s) 127, 564
BpiI GAAGAC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 353
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 642
Bse1I ACTGG 1 cut(s) 240
Bse3DI GCAATG 2 cut(s) 471, 708
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 2 cut(s) 27, 517
BseLI CCNNNNNNNGG 2 cut(s) 370, 642
BseMI GCAATG 2 cut(s) 471, 708
BseMII CTCAG 3 cut(s) 32, 324, 431
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 2 cut(s) 265, 338
BseXI GCAGC 3 cut(s) 190, 210, 308
BshFI GGCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 362
BslFI GGGAC 2 cut(s) 228, 290
BslI CCNNNNNNNGG 2 cut(s) 370, 642
BsmAI GTCTC 2 cut(s) 320, 441
BsmFI GGGAC 2 cut(s) 228, 290
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 362
Bsp19I CCATGG 1 cut(s) 353
BspACI CCGC 1 cut(s) 678
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 3 cut(s) 33, 325, 432
BspHI TCATGA 1 cut(s) 382
BspMAI CTGCAG 1 cut(s) 208
BsrDI GCAATG 2 cut(s) 471, 708
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 353
BssT1I CCWWGG 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 3 cut(s) 41, 333, 440
BstDSI CCRYGG 1 cut(s) 353
BstF5I GGATG 2 cut(s) 27, 517
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstMAI GTCTC 2 cut(s) 320, 441
BstMWI GCNNNNNNNGC 2 cut(s) 386, 662
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 3 cut(s) 190, 210, 308
BstV2I GAAGAC 1 cut(s) 99
BsuRI GGCC 1 cut(s) 37
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 2 cut(s) 27, 517
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 142
CciI TCATGA 1 cut(s) 382
CfoI GCGC 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 45, 53
Csp6I GTAC 1 cut(s) 502
CviAII CATG 6 cut(s) 145, 240, 354, 383, 598, 637
CviJI RGCY 7 cut(s) 37, 299, 332, 380, 389, 536, 656
CviKI_1 RGCY 7 cut(s) 37, 299, 332, 380, 389, 536, 656
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 3 cut(s) 41, 333, 440
DraI TTTAAA 1 cut(s) 124
DraIII CACNNNGTG 1 cut(s) 413
EaeI YGGCCR 1 cut(s) 35
EciI GGCGGA 1 cut(s) 693
Eco130I CCWWGG 1 cut(s) 353
Eco47I GGWCC 2 cut(s) 45, 53
Eco47III AGCGCT 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 6 cut(s) 148, 243, 357, 386, 601, 640
FaiI YATR 8 cut(s) 62, 146, 241, 355, 384, 587, 599, 638
FaqI GGGAC 2 cut(s) 228, 290
FatI CATG 6 cut(s) 144, 239, 353, 382, 597, 636
Fnu4HI GCNGC 3 cut(s) 199, 204, 297
FokI GGATG 2 cut(s) 34, 524
Fsp4HI GCNGC 3 cut(s) 199, 204, 297
FspBI CTAG 2 cut(s) 368, 657
GlaI GCGC 1 cut(s) 202
GluI GCNGC 3 cut(s) 199, 204, 297
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 1 cut(s) 37
HhaI GCGC 1 cut(s) 203
Hin1II CATG 6 cut(s) 148, 243, 357, 386, 601, 640
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 2 cut(s) 287, 434
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 3 cut(s) 292, 441, 688
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 331, 668
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 716
HpyCH4V TGCA 3 cut(s) 144, 206, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 386, 662
HpyF3I CTNAG 3 cut(s) 41, 333, 440
HpySE526I ACGT 1 cut(s) 716
Hsp92II CATG 6 cut(s) 148, 243, 357, 386, 601, 640
HspAI GCGC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 365
LpnPI CCDG 3 cut(s) 154, 221, 555
Lsp1109I GCAGC 3 cut(s) 190, 210, 308
LweI GCATC 2 cut(s) 127, 564
MaeI CTAG 2 cut(s) 368, 657
MaeII ACGT 1 cut(s) 716
MboII GAAGA 3 cut(s) 17, 104, 581
MhlI GDGCHC 1 cut(s) 362
MlsI TGGCCA 1 cut(s) 37
MluCI AATT 1 cut(s) 209
MluNI TGGCCA 1 cut(s) 37
MlyI GAGTC 1 cut(s) 443
MmeI TCCRAC 3 cut(s) 153, 398, 711
MnlI CCTC 8 cut(s) 36, 128, 223, 243, 316, 364, 595, 605
Mox20I TGGCCA 1 cut(s) 37
MscI TGGCCA 1 cut(s) 37
MseI TTAA 5 cut(s) 123, 155, 531, 723, 730
Msp20I TGGCCA 1 cut(s) 37
MspA1I CMGCKG 1 cut(s) 332
Mva1269I GAATGC 1 cut(s) 637
MwoI GCNNNNNNNGC 2 cut(s) 386, 662
NcoI CCATGG 1 cut(s) 353
NlaIII CATG 6 cut(s) 148, 243, 357, 386, 601, 640
PagI TCATGA 1 cut(s) 382
PctI GAATGC 1 cut(s) 637
PfeI GAWTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 642
PkrI GCNGC 3 cut(s) 200, 205, 298
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
Psp1406I AACGTT 1 cut(s) 716
PspPI GGNCC 2 cut(s) 45, 53
PstI CTGCAG 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
SaqAI TTAA 5 cut(s) 123, 155, 531, 723, 730
SatI GCNGC 3 cut(s) 199, 204, 297
Sau96I GGNCC 2 cut(s) 45, 53
SchI GAGTC 1 cut(s) 443
SduI GDGCHC 1 cut(s) 362
SfaNI GCATC 2 cut(s) 127, 564
SfcI CTRYAG 1 cut(s) 204
SinI GGWCC 2 cut(s) 45, 53
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 1 cut(s) 209
SsiI CCGC 1 cut(s) 678
SspMI CTAG 2 cut(s) 368, 657
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 719
TaqI TCGA 1 cut(s) 321
TasI AATT 1 cut(s) 209
TatI WGTACW 1 cut(s) 501
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 5 cut(s) 123, 155, 531, 723, 730
Tru9I TTAA 5 cut(s) 123, 155, 531, 723, 730
TscAI CASTG 1 cut(s) 45
TseI GCWGC 3 cut(s) 198, 203, 296
TspDTI ATGAA 6 cut(s) 161, 307, 391, 399, 653, 697
TspRI CASTG 1 cut(s) 45
Van91I CCANNNNNTGG 1 cut(s) 642
VpaK11BI GGWCC 2 cut(s) 45, 53
XspI CTAG 2 cut(s) 368, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.