Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041438.1

Orthogroup ID

OG0000284

Physical Location & Seq

Genomic Coordinates Forward (+)

122 .. 403

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041438.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atgccacagtggaccgaccagcctactaattccaaattggttgagggtctttggaaggttggaattagagtaacggttgatcagaatagtgggttggttggaagagaagatattgagttgtgcattaggaaagtgatgggggaggaggggattgaaatgaaaatgaatgctaaaaagtggagggagctggctattgaggcagtgagtgaggggggcacctcggataagaatattgatgaatttgtatcgaagttggtaattgctaagccagccagcgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0032787 GO:0035251 GO:0042445 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0071704 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

93

Amino Acids

10.33

Weight (kDa)

5.16

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05675 AT1G05680
fragaria_vesca	FvH4_2g03180 FvH4_2g03250 FvH4_2g03250 FvH4_2g03260 FvH4_2g03280 FvH4_2g03282 FvH4_2g03300 FvH4_2g17430 FvH4_3g07860
malus_domestica	MD05G1106600.v1.1 MD10G1111000.v1.1 MD10G1111100.v1.1 MD10G1111300.v1.1 MD15G1305500.v1.1 MD15G1357700.v1.1 MD16G1086200.v1.1
prunus_persica	Prupe.1G505100_v2.0.a1 Prupe.1G505200_v2.0.a1 Prupe.6G211600_v2.0.a1 Prupe.8G150600_v2.0.a1 Prupe.8G150700_v2.0.a1 Prupe.8G185900_v2.0.a1 Prupe.8G186000_v2.0.a1 Prupe.8G186100_v2.0.a1 Prupe.8G186200_v2.0.a1 Prupe.I000900_v2.0.a1 Prupe.I001000_v2.0.a1
pyrus_communis	pycom10g09600 pycom10g09610 pycom10g09620 pycom15g31960
rosa_chinensis	RchiOBHm_Chr6g0248151 RchiOBHm_Chr6g0248201 RchiOBHm_Chr6g0248231 RchiOBHm_Chr6g0248251 RchiOBHm_Chr6g0248261 RchiOBHm_Chr6g0248271 RchiOBHm_Chr6g0248321 RchiOBHm_Chr6g0248331 RchiOBHm_Chr6g0248381 RchiOBHm_Chr6g0248391 RchiOBHm_Chr6g0248401 RchiOBHm_Chr6g0248411 RchiOBHm_Chr6g0248421 RchiOBHm_Chr6g0282101 RchiOBHm_Chr6g0282111
rosa_laevigata	RLG00000012908 RLG00000012910 RLG00000015155 RLG00000015156 RLG00000015157 RLG00000015158 RLG00000015159 RLG00000015162
rosa_multiflora	Rmu_co8202196.1_g000001 Rmu_co8203792.1_g000001 Rmu_co8228231.1_g000001 Rmu_co8347131.1_g000001 Rmu_sc0000569.1_g000027 Rmu_sc0001700.1_g000052 Rmu_sc0002553.1_g000004 Rmu_sc0002553.1_g000005 Rmu_sc0004210.1_g000002 Rmu_sc0004295.1_g000009 Rmu_sc0004295.1_g000028 Rmu_sc0004295.1_g000034 Rmu_sc0005018.1_g000004 Rmu_sc0005018.1_g000007 Rmu_sc0015195.1_g000002 Rmu_sc0017247.1_g000001 Rmu_sc0041438.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186520 Rroxscaffold_7G00186550 Rroxscaffold_7G00213300 Rroxscaffold_7G00213340 Rroxscaffold_7G00213380 Rroxscaffold_7G00213400 Rroxscaffold_7G00213450
rosa_rugosa	Rorug05G0530300 Rorug05G0531000 Rorug05G0531100 Rorug05G0552500 Rorug05G0552500 Rorug06G0145500
rosa_samantha	Rh2AG004400 Rh6AG045600 Rh6AG045900 Rh6AG046200 Rh6AG046500 Rh6AG046700 Rh6AG258500 Rh6BG041200 Rh6BG041600 Rh6BG041700 Rh6BG041900 Rh6BG042000 Rh6BG042500 Rh6BG043000 Rh6BG043100 Rh6BG043200 Rh6BG043300 Rh6BG043400 Rh6BG261900 Rh6CG038700 Rh6CG038900 Rh6CG039100 Rh6CG039400 Rh6CG039700 Rh6CG039800 Rh6CG039900 Rh6CG040000 Rh6CG040100 Rh6CG260800
rosa_wichuraiana	Rw6G003950 Rw6G003970 Rw6G003980 Rw6G004010 Rw6G004050 Rw6G004060 Rw6G004070 Rw6G004080 Rw6G022370 Rw6G022380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	155
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	12
BaeGI	GKGCMC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	215
BccI	CCATC	1 cut(s)	130
BclI	TGATCA	1 cut(s)	79
BlpI	GCTNAGC	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	217
Bpu1102I	GCTNAGC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	219
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	218
BshNI	GGYRCC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	79
Bsp1720I	GCTNAGC	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	79
Bst4CI	ACNGT	2 cut(s)	9, 76
Bst6I	CTCTTC	1 cut(s)	97
BstC8I	GCNNGC	3 cut(s)	189, 270, 274
BstDEI	CTNAG	1 cut(s)	264
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 269
BstSLI	GKGCMC	1 cut(s)	218
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	2 cut(s)	14, 207
Cac8I	GCNNGC	3 cut(s)	189, 270, 274
Cfr13I	GGNCC	1 cut(s)	12
CviJI	RGCY	5 cut(s)	22, 187, 191, 268, 272
CviKI_1	RGCY	5 cut(s)	22, 187, 191, 268, 272
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	12
FbaI	TGATCA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	84, 223
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	2 cut(s)	9, 76
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 269
HpyF3I	CTNAG	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	2 cut(s)	32, 173
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	2 cut(s)	114, 119
MhlI	GDGCHC	1 cut(s)	218
MluCI	AATT	5 cut(s)	28, 35, 63, 239, 258
MmeI	TCCRAC	2 cut(s)	40, 79
MnlI	CCTC	7 cut(s)	37, 136, 139, 174, 190, 202, 229
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	197, 269
NdeII	GATC	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	217
PctI	GAATGC	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	3 cut(s)	60, 189, 221
SgeI	CNNG	3 cut(s)	31, 200, 232
SinI	GGWCC	1 cut(s)	12
Sse9I	AATT	5 cut(s)	28, 35, 63, 239, 258
SspI	AATATT	1 cut(s)	232
TaaI	ACNGT	2 cut(s)	9, 76
TaqI	TCGA	1 cut(s)	248
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	5 cut(s)	28, 35, 63, 239, 258
TscAI	CASTG	2 cut(s)	14, 207
TspDTI	ATGAA	3 cut(s)	173, 179, 252
TspRI	CASTG	2 cut(s)	14, 207
VpaK11BI	GGWCC	1 cut(s)	12
XapI	RAATTY	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.