Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8203792.1

Orthogroup ID

OG0000284

Physical Location & Seq

Genomic Coordinates Forward (+)

141 .. 716

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8203792.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgaagaaccaaaaaactgggcatgtgattgtgctcacatatccagctcaaggccacataaaccctctgcttcaatttgctaagcgcttagcctccaaaggactcaaggtcactctagccaccaccccttatactctcaaatccatccactcaaccactgtaggaattgaaccaatctcagatggatatgatgaaagtggatttagccaatcccctagtgttcaagcctacttagactcattcagaacagttggctcaagaacactatcagagcttatactcaaattcagctcctcaggctcacctgtcaactgtattgtatatgattcattgcttccatgggcacttgatgtggctaaaaagttcagcatctatggagctgtgttcttgacaaactcagcttcagtgtgctctatattttggcatatcagtcatggccgtctgagtttccctgtgacgcaagaaagcggtgcgcctttgttgatgcctggccttcctccactagatcttcctgacctgccaggtttcctatcacagcctgcgcctcacacgccttatttggctttgatcttcgaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044464 GO:0044550 GO:0045229 GO:0046527 GO:0047251 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080043 GO:0080044 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

192

Amino Acids

20.79

Weight (kDa)

7.81

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000284)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05675 AT1G05680
fragaria_vesca	FvH4_2g03180 FvH4_2g03250 FvH4_2g03250 FvH4_2g03260 FvH4_2g03280 FvH4_2g03282 FvH4_2g03300 FvH4_2g17430 FvH4_3g07860
malus_domestica	MD05G1106600.v1.1 MD10G1111000.v1.1 MD10G1111100.v1.1 MD10G1111300.v1.1 MD15G1305500.v1.1 MD15G1357700.v1.1 MD16G1086200.v1.1
prunus_persica	Prupe.1G505100_v2.0.a1 Prupe.1G505200_v2.0.a1 Prupe.6G211600_v2.0.a1 Prupe.8G150600_v2.0.a1 Prupe.8G150700_v2.0.a1 Prupe.8G185900_v2.0.a1 Prupe.8G186000_v2.0.a1 Prupe.8G186100_v2.0.a1 Prupe.8G186200_v2.0.a1 Prupe.I000900_v2.0.a1 Prupe.I001000_v2.0.a1
pyrus_communis	pycom10g09600 pycom10g09610 pycom10g09620 pycom15g31960
rosa_chinensis	RchiOBHm_Chr6g0248151 RchiOBHm_Chr6g0248201 RchiOBHm_Chr6g0248231 RchiOBHm_Chr6g0248251 RchiOBHm_Chr6g0248261 RchiOBHm_Chr6g0248271 RchiOBHm_Chr6g0248321 RchiOBHm_Chr6g0248331 RchiOBHm_Chr6g0248381 RchiOBHm_Chr6g0248391 RchiOBHm_Chr6g0248401 RchiOBHm_Chr6g0248411 RchiOBHm_Chr6g0248421 RchiOBHm_Chr6g0282101 RchiOBHm_Chr6g0282111
rosa_laevigata	RLG00000012908 RLG00000012910 RLG00000015155 RLG00000015156 RLG00000015157 RLG00000015158 RLG00000015159 RLG00000015162
rosa_multiflora	Rmu_co8202196.1_g000001 Rmu_co8203792.1_g000001 Rmu_co8228231.1_g000001 Rmu_co8347131.1_g000001 Rmu_sc0000569.1_g000027 Rmu_sc0001700.1_g000052 Rmu_sc0002553.1_g000004 Rmu_sc0002553.1_g000005 Rmu_sc0004210.1_g000002 Rmu_sc0004295.1_g000009 Rmu_sc0004295.1_g000028 Rmu_sc0004295.1_g000034 Rmu_sc0005018.1_g000004 Rmu_sc0005018.1_g000007 Rmu_sc0015195.1_g000002 Rmu_sc0017247.1_g000001 Rmu_sc0041438.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186520 Rroxscaffold_7G00186550 Rroxscaffold_7G00213300 Rroxscaffold_7G00213340 Rroxscaffold_7G00213380 Rroxscaffold_7G00213400 Rroxscaffold_7G00213450
rosa_rugosa	Rorug05G0530300 Rorug05G0531000 Rorug05G0531100 Rorug05G0552500 Rorug05G0552500 Rorug06G0145500
rosa_samantha	Rh2AG004400 Rh6AG045600 Rh6AG045900 Rh6AG046200 Rh6AG046500 Rh6AG046700 Rh6AG258500 Rh6BG041200 Rh6BG041600 Rh6BG041700 Rh6BG041900 Rh6BG042000 Rh6BG042500 Rh6BG043000 Rh6BG043100 Rh6BG043200 Rh6BG043300 Rh6BG043400 Rh6BG261900 Rh6CG038700 Rh6CG038900 Rh6CG039100 Rh6CG039400 Rh6CG039700 Rh6CG039800 Rh6CG039900 Rh6CG040000 Rh6CG040100 Rh6CG260800
rosa_wichuraiana	Rw6G003950 Rw6G003970 Rw6G003980 Rw6G004010 Rw6G004050 Rw6G004060 Rw6G004070 Rw6G004080 Rw6G022370 Rw6G022380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	525
AciI	CCGC	1 cut(s)	468
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	387
AfeI	AGCGCT	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	3 cut(s)	74, 170, 224
AhdI	GACNNNNNGTC	1 cut(s)	107
AjnI	CCWGG	2 cut(s)	487, 520
AluBI	AGCT	5 cut(s)	47, 274, 291, 380, 401
AluI	AGCT	5 cut(s)	47, 274, 291, 380, 401
Alw21I	GWGCWC	2 cut(s)	36, 413
Aor51HI	AGCGCT	1 cut(s)	86
AoxI	GGCC	3 cut(s)	52, 436, 490
ApoI	RAATTY	1 cut(s)	284
AspLEI	GCGC	3 cut(s)	87, 475, 544
AsuHPI	GGTGA	1 cut(s)	294
AsuII	TTCGAA	1 cut(s)	573
AxyI	CCTNAGG	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	346
Bbv12I	GWGCWC	2 cut(s)	36, 413
BccI	CCATC	2 cut(s)	152, 176
BceAI	ACGGC	1 cut(s)	423
BciT130I	CCWGG	2 cut(s)	489, 522
BfaI	CTAG	3 cut(s)	116, 216, 503
BfmI	CTRYAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	88
BfuAI	ACCTGC	1 cut(s)	525
BglII	AGATCT	1 cut(s)	505
BlpI	GCTNAGC	2 cut(s)	81, 88
Bme1390I	CCNGG	2 cut(s)	489, 522
BmeRI	GACNNNNNGTC	1 cut(s)	107
BmrFI	CCNGG	2 cut(s)	489, 522
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	2 cut(s)	378, 474
BmuI	ACTGGG	1 cut(s)	27
Bpu1102I	GCTNAGC	2 cut(s)	81, 88
Bpu14I	TTCGAA	1 cut(s)	573
BpuEI	CTTGAG	3 cut(s)	33, 89, 241
BsaJI	CCNNGG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	22
Bse21I	CCTNAGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	329
BseBI	CCWGG	2 cut(s)	489, 522
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	329
BseMII	CTCAG	4 cut(s)	192, 309, 411, 434
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	283
BseSI	GKGCMC	1 cut(s)	346
BshFI	GGCC	3 cut(s)	54, 438, 492
BsiHKAI	GWGCWC	2 cut(s)	36, 413
BslI	CCNNNNNNNGG	1 cut(s)	50
BsnI	GGCC	3 cut(s)	54, 438, 492
Bsp119I	TTCGAA	1 cut(s)	573
Bsp1286I	GDGCHC	3 cut(s)	36, 346, 413
Bsp143I	GATC	2 cut(s)	505, 567
Bsp1720I	GCTNAGC	2 cut(s)	81, 88
Bsp19I	CCATGG	1 cut(s)	338
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	3 cut(s)	54, 438, 492
BspCNI	CTCAG	4 cut(s)	191, 308, 410, 435
BspMI	ACCTGC	1 cut(s)	525
BspT104I	TTCGAA	1 cut(s)	573
BsrDI	GCAATG	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	2 cut(s)	505, 567
BssT1I	CCWWGG	1 cut(s)	338
Bst2UI	CCWGG	2 cut(s)	489, 522
Bst4CI	ACNGT	3 cut(s)	160, 250, 314
BstBI	TTCGAA	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	7 cut(s)	81, 88, 178, 232, 295, 397, 443
BstDSI	CCRYGG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	3 cut(s)	87, 475, 544
BstKTI	GATC	2 cut(s)	508, 570
BstMBI	GATC	2 cut(s)	505, 567
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 550
BstNI	CCWGG	2 cut(s)	489, 522
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	487, 520
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	505
BstXI	CCANNNNNNTGG	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	505
Bsu36I	CCTNAGG	1 cut(s)	295
BsuRI	GGCC	3 cut(s)	54, 438, 492
BtgI	CCRYGG	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	156, 411
BveI	ACCTGC	1 cut(s)	525
Cac8I	GCNNGC	1 cut(s)	540
CfoI	GCGC	3 cut(s)	87, 475, 544
CseI	GACGC	1 cut(s)	466
CviAII	CATG	3 cut(s)	23, 339, 434
DdeI	CTNAG	7 cut(s)	81, 88, 178, 232, 295, 397, 443
DpnI	GATC	2 cut(s)	507, 569
DpnII	GATC	2 cut(s)	505, 567
DriI	GACNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	436
Eam1105I	GACNNNNNGTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	338
Eco47III	AGCGCT	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	387
Eco81I	CCTNAGG	1 cut(s)	295
EcoRII	CCWGG	2 cut(s)	487, 520
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	3 cut(s)	26, 342, 437
FatI	CATG	3 cut(s)	22, 338, 433
FokI	GGATG	1 cut(s)	131
FspBI	CTAG	3 cut(s)	116, 216, 503
GlaI	GCGC	3 cut(s)	86, 474, 543
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	3 cut(s)	54, 438, 492
HgaI	GACGC	1 cut(s)	466
HhaI	GCGC	3 cut(s)	87, 475, 544
Hin1II	CATG	3 cut(s)	26, 342, 437
Hin6I	GCGC	3 cut(s)	85, 473, 542
HinP1I	GCGC	3 cut(s)	85, 473, 542
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	3 cut(s)	102, 236, 326
HphI	GGTGA	1 cut(s)	294
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	4 cut(s)	181, 245, 271, 444
Hpy188III	TCNNGA	3 cut(s)	258, 388, 512
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	503
HpyCH4III	ACNGT	3 cut(s)	160, 250, 314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 550
HpyF3I	CTNAG	7 cut(s)	81, 88, 178, 232, 295, 397, 443
Hsp92II	CATG	3 cut(s)	26, 342, 437
HspAI	GCGC	3 cut(s)	85, 473, 542
Kzo9I	GATC	2 cut(s)	505, 567
LmnI	GCTCC	2 cut(s)	296, 377
LweI	GCATC	2 cut(s)	378, 474
MaeI	CTAG	3 cut(s)	116, 216, 503
MaeIII	GTNAC	2 cut(s)	109, 454
MalI	GATC	2 cut(s)	507, 569
MboI	GATC	2 cut(s)	505, 567
MboII	GAAGA	3 cut(s)	16, 500, 562
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	3 cut(s)	36, 346, 413
MluCI	AATT	3 cut(s)	74, 165, 284
MlyI	GAGTC	2 cut(s)	96, 230
MnlI	CCTC	5 cut(s)	75, 103, 304, 507, 555
MspR9I	CCNGG	2 cut(s)	489, 522
MvaI	CCWGG	2 cut(s)	489, 522
MwoI	GCNNNNNNNGC	2 cut(s)	297, 550
NcoI	CCATGG	1 cut(s)	338
NdeII	GATC	2 cut(s)	505, 567
NlaIII	CATG	3 cut(s)	26, 342, 437
NmuCI	GTSAC	2 cut(s)	109, 454
NspI	RCATGY	1 cut(s)	26
NspV	TTCGAA	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	326
PleI	GAGTC	2 cut(s)	96, 230
PpsI	GAGTC	2 cut(s)	96, 230
Psp6I	CCWGG	2 cut(s)	487, 520
PspGI	CCWGG	2 cut(s)	487, 520
PsuI	RGATCY	1 cut(s)	505
Sau3AI	GATC	2 cut(s)	505, 567
SchI	GAGTC	2 cut(s)	96, 230
ScrFI	CCNGG	2 cut(s)	489, 522
SduI	GDGCHC	3 cut(s)	36, 346, 413
SetI	ASST	9 cut(s)	49, 111, 276, 293, 307, 382, 403, 519, 526
SfaNI	GCATC	2 cut(s)	378, 474
SfcI	CTRYAG	1 cut(s)	159
SfuI	TTCGAA	1 cut(s)	573
SmlI	CTYRAG	3 cut(s)	48, 104, 256
SmoI	CTYRAG	3 cut(s)	48, 104, 256
Sse9I	AATT	3 cut(s)	74, 165, 284
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	3 cut(s)	116, 216, 503
StyD4I	CCNGG	2 cut(s)	487, 520
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	3 cut(s)	160, 250, 314
TaqI	TCGA	1 cut(s)	573
TasI	AATT	3 cut(s)	74, 165, 284
TfiI	GAWTC	1 cut(s)	326
TscAI	CASTG	2 cut(s)	163, 411
TseFI	GTSAC	2 cut(s)	109, 454
Tsp45I	GTSAC	2 cut(s)	109, 454
TspDTI	ATGAA	3 cut(s)	17, 207, 318
TspRI	CASTG	2 cut(s)	163, 411
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	1 cut(s)	26
XspI	CTAG	3 cut(s)	116, 216, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.