Rh2AG004400

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
420457 .. 420732
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG004400.1

Sequence Viewer

Length: 276 bp
ATGGTGACAATGCCACATTGGGCTGATCAAGCAACTAATGCCAAATTTGTTGAGGATGTATGGAAAGCAGGAGTCAGAGTGAAGAAGAATGAGAAGGGTATTGCTACAAAACAAGAAATAGCAAAGTGTATTAAGCAAGTTATGGAAGAGGAGAAAGGGATGAAGATGAGAAAAGCTTCATTAAGGTGGAAAGAACTAGCTAAAGAGGCAGTCGATGAAGGGGGTAGTTCTGATAAGAACATTGAAGAATTTGTTGCAGAAGTTAAGTTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

91

Amino Acids

10.35

Weight (kDa)

8.69

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05675 AT1G05680
fragaria_vesca FvH4_2g03180 FvH4_2g03250 FvH4_2g03250 FvH4_2g03260 FvH4_2g03280 FvH4_2g03282 FvH4_2g03300 FvH4_2g17430 FvH4_3g07860
malus_domestica MD05G1106600.v1.1 MD10G1111000.v1.1 MD10G1111100.v1.1 MD10G1111300.v1.1 MD15G1305500.v1.1 MD15G1357700.v1.1 MD16G1086200.v1.1
prunus_persica Prupe.1G505100_v2.0.a1 Prupe.1G505200_v2.0.a1 Prupe.6G211600_v2.0.a1 Prupe.8G150600_v2.0.a1 Prupe.8G150700_v2.0.a1 Prupe.8G185900_v2.0.a1 Prupe.8G186000_v2.0.a1 Prupe.8G186100_v2.0.a1 Prupe.8G186200_v2.0.a1 Prupe.I000900_v2.0.a1 Prupe.I001000_v2.0.a1
pyrus_communis pycom10g09600 pycom10g09610 pycom10g09620 pycom15g31960
rosa_chinensis RchiOBHm_Chr6g0248151 RchiOBHm_Chr6g0248201 RchiOBHm_Chr6g0248231 RchiOBHm_Chr6g0248251 RchiOBHm_Chr6g0248261 RchiOBHm_Chr6g0248271 RchiOBHm_Chr6g0248321 RchiOBHm_Chr6g0248331 RchiOBHm_Chr6g0248381 RchiOBHm_Chr6g0248391 RchiOBHm_Chr6g0248401 RchiOBHm_Chr6g0248411 RchiOBHm_Chr6g0248421 RchiOBHm_Chr6g0282101 RchiOBHm_Chr6g0282111
rosa_laevigata RLG00000012908 RLG00000012910 RLG00000015155 RLG00000015156 RLG00000015157 RLG00000015158 RLG00000015159 RLG00000015162
rosa_multiflora Rmu_co8202196.1_g000001 Rmu_co8203792.1_g000001 Rmu_co8228231.1_g000001 Rmu_co8347131.1_g000001 Rmu_sc0000569.1_g000027 Rmu_sc0001700.1_g000052 Rmu_sc0002553.1_g000004 Rmu_sc0002553.1_g000005 Rmu_sc0004210.1_g000002 Rmu_sc0004295.1_g000009 Rmu_sc0004295.1_g000028 Rmu_sc0004295.1_g000034 Rmu_sc0005018.1_g000004 Rmu_sc0005018.1_g000007 Rmu_sc0015195.1_g000002 Rmu_sc0017247.1_g000001 Rmu_sc0041438.1_g000001
rosa_roxburghii Rroxscaffold_7G00186520 Rroxscaffold_7G00186550 Rroxscaffold_7G00213300 Rroxscaffold_7G00213340 Rroxscaffold_7G00213380 Rroxscaffold_7G00213400 Rroxscaffold_7G00213450
rosa_rugosa Rorug05G0530300 Rorug05G0531000 Rorug05G0531100 Rorug05G0552500 Rorug05G0552500 Rorug06G0145500
rosa_samantha Rh2AG004400 Rh6AG045600 Rh6AG045900 Rh6AG046200 Rh6AG046500 Rh6AG046700 Rh6AG258500 Rh6BG041200 Rh6BG041600 Rh6BG041700 Rh6BG041900 Rh6BG042000 Rh6BG042500 Rh6BG043000 Rh6BG043100 Rh6BG043200 Rh6BG043300 Rh6BG043400 Rh6BG261900 Rh6CG038700 Rh6CG038900 Rh6CG039100 Rh6CG039400 Rh6CG039700 Rh6CG039800 Rh6CG039900 Rh6CG040000 Rh6CG040100 Rh6CG260800
rosa_wichuraiana Rw6G003950 Rw6G003970 Rw6G003980 Rw6G004010 Rw6G004050 Rw6G004060 Rw6G004070 Rw6G004080 Rw6G022370 Rw6G022380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 44, 248
AgsI TTSAA 1 cut(s) 245
AluBI AGCT 2 cut(s) 176, 200
AluI AGCT 2 cut(s) 176, 200
ApoI RAATTY 2 cut(s) 44, 248
Asp700I GAANNNNTTC 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 16
BclI TGATCA 1 cut(s) 25
BfaI CTAG 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
BseGI GGATG 2 cut(s) 61, 165
BseRI GAGGAG 1 cut(s) 164
Bsp143I GATC 1 cut(s) 25
BssMI GATC 1 cut(s) 25
Bst6I CTCTTC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 38
BstF5I GGATG 2 cut(s) 61, 165
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 3 cut(s) 29, 38, 206
BtsCI GGATG 2 cut(s) 61, 165
CviJI RGCY 3 cut(s) 23, 176, 200
CviKI_1 RGCY 3 cut(s) 23, 176, 200
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
FaiI YATR 2 cut(s) 61, 143
FbaI TGATCA 1 cut(s) 25
FokI GGATG 2 cut(s) 68, 172
FspBI CTAG 1 cut(s) 197
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 1 cut(s) 72
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 77, 232
HpyAV CCTTC 2 cut(s) 88, 212
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 38, 206
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 1 cut(s) 54
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 4
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 5 cut(s) 94, 97, 158, 175, 257
MluCI AATT 3 cut(s) 44, 248, 270
MlyI GAGTC 1 cut(s) 81
MnlI CCTC 3 cut(s) 46, 142, 199
MroXI GAANNNNTTC 1 cut(s) 175
MseI TTAA 4 cut(s) 132, 182, 264, 269
MslI CAYNNNNRTG 1 cut(s) 184
MwoI GCNNNNNNNGC 3 cut(s) 29, 38, 206
NdeII GATC 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 4
PdmI GAANNNNTTC 1 cut(s) 175
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 184
SaqAI TTAA 4 cut(s) 132, 182, 264, 269
Sau3AI GATC 1 cut(s) 25
SchI GAGTC 1 cut(s) 81
SetI ASST 3 cut(s) 178, 188, 202
SgeI CNNG 5 cut(s) 41, 81, 125, 149, 209
SmiMI CAYNNNNRTG 1 cut(s) 184
Sse9I AATT 3 cut(s) 44, 248, 270
SspMI CTAG 1 cut(s) 197
TaqI TCGA 1 cut(s) 213
TasI AATT 3 cut(s) 44, 248, 270
Tru1I TTAA 4 cut(s) 132, 182, 264, 269
Tru9I TTAA 4 cut(s) 132, 182, 264, 269
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 3 cut(s) 168, 176, 231
XapI RAATTY 2 cut(s) 44, 248
XmnI GAANNNNTTC 1 cut(s) 175
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.