RchiOBHm_Chr6g0248231

UDP-glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000284
Physical Location & Seq
Forward (+)
4215701 .. 4216366
666 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22250

Sequence Viewer

Length: 612 bp
ATGTCGAAGCTTTGGCCATTGAAGACAATAGGACCAACCATACCATCCATGTACTTGGATAACCGACTTAAAGAGGACAAAGATTATGGTGTCAGTCTCTTCAAGCAAAATAATGATGCCTGCATGAAATGGCTCAATGAACGACCGAAGGTGTCTGTTGTTTATGTGTCATTTGGTAGTGGAGCAGAACTTGGAGCTGAGCAAATGGAGGAACTGGCTTGGGGATTGAGGAGCAGCAAAAGCAATTTCTTGTGGGTGGTTACGGAATCAGAAGCGGGTAAGATCCCGAAAGGGTTTGTCTTGGCTCATGAAGCTGTTGGGTGCTTCATTACACATTGTGGTTGGAACTCTACATTGGAGGCTTTGGGTCTAGGGGTTCCAATTCTGGCGATGCCACAATGGACTGACCAAGGCACCAATGCCAAGTACATTGTGGATGTGTGGAAAATTGGGCTTAAAGCTTTAGCTGATGAGAAAGGAATTGTAAGGAAAGATGTGGTTGTGCATTGCATAATTGAAATAATTGAAGGAGCGACAGGGAAAGAGAGGCGAAGGAATGCTATGAAATGGAAGCAAGTGGCTAGAAAGGCTATGGATGAAGGTGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

203

Amino Acids

22.57

Weight (kDa)

8.6

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 50 - 178 2.2e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05675 AT1G05680
fragaria_vesca FvH4_2g03180 FvH4_2g03250 FvH4_2g03250 FvH4_2g03260 FvH4_2g03280 FvH4_2g03282 FvH4_2g03300 FvH4_2g17430 FvH4_3g07860
malus_domestica MD05G1106600.v1.1 MD10G1111000.v1.1 MD10G1111100.v1.1 MD10G1111300.v1.1 MD15G1305500.v1.1 MD15G1357700.v1.1 MD16G1086200.v1.1
prunus_persica Prupe.1G505100_v2.0.a1 Prupe.1G505200_v2.0.a1 Prupe.6G211600_v2.0.a1 Prupe.8G150600_v2.0.a1 Prupe.8G150700_v2.0.a1 Prupe.8G185900_v2.0.a1 Prupe.8G186000_v2.0.a1 Prupe.8G186100_v2.0.a1 Prupe.8G186200_v2.0.a1 Prupe.I000900_v2.0.a1 Prupe.I001000_v2.0.a1
pyrus_communis pycom10g09600 pycom10g09610 pycom10g09620 pycom15g31960
rosa_chinensis RchiOBHm_Chr6g0248151 RchiOBHm_Chr6g0248201 RchiOBHm_Chr6g0248231 RchiOBHm_Chr6g0248251 RchiOBHm_Chr6g0248261 RchiOBHm_Chr6g0248271 RchiOBHm_Chr6g0248321 RchiOBHm_Chr6g0248331 RchiOBHm_Chr6g0248381 RchiOBHm_Chr6g0248391 RchiOBHm_Chr6g0248401 RchiOBHm_Chr6g0248411 RchiOBHm_Chr6g0248421 RchiOBHm_Chr6g0282101 RchiOBHm_Chr6g0282111
rosa_laevigata RLG00000012908 RLG00000012910 RLG00000015155 RLG00000015156 RLG00000015157 RLG00000015158 RLG00000015159 RLG00000015162
rosa_multiflora Rmu_co8202196.1_g000001 Rmu_co8203792.1_g000001 Rmu_co8228231.1_g000001 Rmu_co8347131.1_g000001 Rmu_sc0000569.1_g000027 Rmu_sc0001700.1_g000052 Rmu_sc0002553.1_g000004 Rmu_sc0002553.1_g000005 Rmu_sc0004210.1_g000002 Rmu_sc0004295.1_g000009 Rmu_sc0004295.1_g000028 Rmu_sc0004295.1_g000034 Rmu_sc0005018.1_g000004 Rmu_sc0005018.1_g000007 Rmu_sc0015195.1_g000002 Rmu_sc0017247.1_g000001 Rmu_sc0041438.1_g000001
rosa_roxburghii Rroxscaffold_7G00186520 Rroxscaffold_7G00186550 Rroxscaffold_7G00213300 Rroxscaffold_7G00213340 Rroxscaffold_7G00213380 Rroxscaffold_7G00213400 Rroxscaffold_7G00213450
rosa_rugosa Rorug05G0530300 Rorug05G0531000 Rorug05G0531100 Rorug05G0552500 Rorug05G0552500 Rorug06G0145500
rosa_samantha Rh2AG004400 Rh6AG045600 Rh6AG045900 Rh6AG046200 Rh6AG046500 Rh6AG046700 Rh6AG258500 Rh6BG041200 Rh6BG041600 Rh6BG041700 Rh6BG041900 Rh6BG042000 Rh6BG042500 Rh6BG043000 Rh6BG043100 Rh6BG043200 Rh6BG043300 Rh6BG043400 Rh6BG261900 Rh6CG038700 Rh6CG038900 Rh6CG039100 Rh6CG039400 Rh6CG039700 Rh6CG039800 Rh6CG039900 Rh6CG040000 Rh6CG040100 Rh6CG260800
rosa_wichuraiana Rw6G003950 Rw6G003970 Rw6G003980 Rw6G004010 Rw6G004050 Rw6G004060 Rw6G004070 Rw6G004080 Rw6G022370 Rw6G022380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 413
AciI CCGC 1 cut(s) 275
AclWI GGATC 1 cut(s) 277
AcoI YGGCCR 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 338
AfaI GTAC 2 cut(s) 53, 428
AgsI TTSAA 4 cut(s) 22, 103, 518, 527
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 5 cut(s) 10, 197, 314, 461, 467
AluI AGCT 5 cut(s) 10, 197, 314, 461, 467
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 277
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 32
AvaII GGWCC 1 cut(s) 32
BalI TGGCCA 1 cut(s) 16
BanI GGYRCC 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 246
BccI CCATC 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 2 cut(s) 371, 582
BisI GCNGC 1 cut(s) 235
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 378, 415
BmsI GCATC 2 cut(s) 106, 381
BpiI GAAGAC 1 cut(s) 29
Bpu1102I GCTNAGC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 505
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 3 cut(s) 44, 442, 601
BseMI GCAATG 1 cut(s) 505
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 246
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 1 cut(s) 16
BshNI GGYRCC 1 cut(s) 413
BsiEI CGRYCG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 562
BsnI GGCC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 282
Bsp1720I GCTNAGC 1 cut(s) 198
BspACI CCGC 1 cut(s) 275
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 190
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 378, 415
BspPI GGATC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 505
BsrI ACTGG 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 409
Bst6I CTCTTC 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 3 cut(s) 44, 442, 601
BstKTI GATC 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 282
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 3 cut(s) 240, 311, 587
BstV1I GCAGC 1 cut(s) 246
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 282
BstXI CCANNNNNNTGG 1 cut(s) 55
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 404
BtsCI GGATG 3 cut(s) 44, 442, 601
Cac8I GCNNGC 1 cut(s) 121
CciI TCATGA 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 32
Csp6I GTAC 2 cut(s) 52, 427
CviAII CATG 3 cut(s) 49, 124, 308
CviQI GTAC 2 cut(s) 52, 427
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
DraIII CACNNNGTG 1 cut(s) 338
EaeI YGGCCR 1 cut(s) 14
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 3 cut(s) 52, 127, 311
FaiI YATR 9 cut(s) 41, 50, 87, 125, 165, 309, 512, 563, 593
FatI CATG 3 cut(s) 48, 123, 307
FauI CCCGC 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 235
FokI GGATG 3 cut(s) 31, 449, 608
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 2 cut(s) 371, 582
GluI GCNGC 1 cut(s) 235
HaeIII GGCC 1 cut(s) 16
Hin1II CATG 3 cut(s) 52, 127, 311
HindIII AAGCTT 2 cut(s) 8, 459
HinfI GANTC 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 2 cut(s) 286, 308
HpyAV CCTTC 4 cut(s) 142, 521, 546, 593
HpyCH4V TGCA 3 cut(s) 123, 505, 510
HpyF10VI GCNNNNNNNGC 3 cut(s) 240, 311, 587
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 3 cut(s) 52, 127, 311
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 4 cut(s) 182, 194, 231, 530
LpnPI CCDG 4 cut(s) 133, 200, 371, 522
Lsp1109I GCAGC 1 cut(s) 246
LweI GCATC 2 cut(s) 106, 381
MaeI CTAG 2 cut(s) 371, 582
MaeIII GTNAC 1 cut(s) 259
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 2 cut(s) 34, 91
MflI RGATCY 1 cut(s) 282
MlsI TGGCCA 1 cut(s) 16
MluCI AATT 6 cut(s) 244, 381, 447, 480, 513, 522
MluNI TGGCCA 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 5 cut(s) 67, 202, 222, 352, 540
Mox20I TGGCCA 1 cut(s) 16
MscI TGGCCA 1 cut(s) 16
MseI TTAA 2 cut(s) 69, 456
Msp20I TGGCCA 1 cut(s) 16
Mva1269I GAATGC 1 cut(s) 562
MwoI GCNNNNNNNGC 3 cut(s) 240, 311, 587
NdeII GATC 1 cut(s) 282
NlaIII CATG 3 cut(s) 52, 127, 311
NlaIV GGNNCC 2 cut(s) 378, 415
PagI TCATGA 1 cut(s) 307
PctI GAATGC 1 cut(s) 562
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 378, 415
PspPI GGNCC 1 cut(s) 32
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 2 cut(s) 53, 428
RsaNI GTAC 2 cut(s) 52, 427
SaqAI TTAA 2 cut(s) 69, 456
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 1 cut(s) 282
Sau96I GGNCC 1 cut(s) 32
SetI ASST 7 cut(s) 12, 153, 199, 316, 463, 469, 604
SfaNI GCATC 2 cut(s) 106, 381
SinI GGWCC 1 cut(s) 32
Sse9I AATT 6 cut(s) 244, 381, 447, 480, 513, 522
SsiI CCGC 1 cut(s) 275
SspMI CTAG 2 cut(s) 371, 582
StyI CCWWGG 1 cut(s) 409
TaqI TCGA 1 cut(s) 5
TaqII GACCGA 1 cut(s) 160
TasI AATT 6 cut(s) 244, 381, 447, 480, 513, 522
TatI WGTACW 2 cut(s) 51, 426
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 2 cut(s) 69, 456
Tru9I TTAA 2 cut(s) 69, 456
TseI GCWGC 1 cut(s) 234
TspDTI ATGAA 6 cut(s) 140, 153, 316, 324, 578, 612
TspGWI ACGGA 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 32
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XspI CTAG 2 cut(s) 371, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.