Rh6CG040100

UDP-glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000284
Physical Location & Seq
Reverse (-)
3900364 .. 3901074
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG040100.1

Sequence Viewer

Length: 711 bp
ATGGCAAAGTTTTGGACACTGAGGACCATTGGACCAACTATACCATCTAACTACTTGGATAACCGACTTGAAGACGACAAAGCTTATGGTGTTGACCTATTTAAATCCAACAATGATGCCTGCATGAAATGGTTAAACGAACATCCAAAGAACTCTGTTTCTTACATTTCATTCGGCAGCGCTGCACGACTGGGACTTGAGCAAATGGAGGAACTGGCATGGGGTTTGAGGAGGAGCAAAACCAAGTTCTTGTGGGTGATTAGAGAATCAGAAGCAGCTAAAGTCCCCAAAGGGTTTATTGAGGAGACAGCTGAGAAGGGTTTGGTGGTTTCATGGTGCTCCCAACTGGAGGTTTTGGCTCATGAGGCTGTTGGATGCTTCATTACACATTGTGGTTGGAACTCGACTTTAGAGGCTTTAAGTTTGGGGGTCCCTTTAGTGGCAATGCCACAATGGACCGATCAAAGCACCAATGCCAAGTACATTAGGGATGTGTGGAAAATAGGGGTTAAAGCTCAACCTGATGAGAAAGGCATCGTAAGGCGAGAAGAAGTAGAGCATTGTATAAGTGAAATCATGGAGGGGGAGAGAGGAAAAGAAATACAAAAGAATGCCATGAAATGGAAAGATTTGGCCAGAAAGGCAGTGATTGAAGGCGGAAGTTCCGACAAAAACATTGATGAGTTCATTGCAACGTTGGTTAAGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

236

Amino Acids

26.72

Weight (kDa)

6.47

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 44 - 208 6.4e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05675 AT1G05680
fragaria_vesca FvH4_2g03180 FvH4_2g03250 FvH4_2g03250 FvH4_2g03260 FvH4_2g03280 FvH4_2g03282 FvH4_2g03300 FvH4_2g17430 FvH4_3g07860
malus_domestica MD05G1106600.v1.1 MD10G1111000.v1.1 MD10G1111100.v1.1 MD10G1111300.v1.1 MD15G1305500.v1.1 MD15G1357700.v1.1 MD16G1086200.v1.1
prunus_persica Prupe.1G505100_v2.0.a1 Prupe.1G505200_v2.0.a1 Prupe.6G211600_v2.0.a1 Prupe.8G150600_v2.0.a1 Prupe.8G150700_v2.0.a1 Prupe.8G185900_v2.0.a1 Prupe.8G186000_v2.0.a1 Prupe.8G186100_v2.0.a1 Prupe.8G186200_v2.0.a1 Prupe.I000900_v2.0.a1 Prupe.I001000_v2.0.a1
pyrus_communis pycom10g09600 pycom10g09610 pycom10g09620 pycom15g31960
rosa_chinensis RchiOBHm_Chr6g0248151 RchiOBHm_Chr6g0248201 RchiOBHm_Chr6g0248231 RchiOBHm_Chr6g0248251 RchiOBHm_Chr6g0248261 RchiOBHm_Chr6g0248271 RchiOBHm_Chr6g0248321 RchiOBHm_Chr6g0248331 RchiOBHm_Chr6g0248381 RchiOBHm_Chr6g0248391 RchiOBHm_Chr6g0248401 RchiOBHm_Chr6g0248411 RchiOBHm_Chr6g0248421 RchiOBHm_Chr6g0282101 RchiOBHm_Chr6g0282111
rosa_laevigata RLG00000012908 RLG00000012910 RLG00000015155 RLG00000015156 RLG00000015157 RLG00000015158 RLG00000015159 RLG00000015162
rosa_multiflora Rmu_co8202196.1_g000001 Rmu_co8203792.1_g000001 Rmu_co8228231.1_g000001 Rmu_co8347131.1_g000001 Rmu_sc0000569.1_g000027 Rmu_sc0001700.1_g000052 Rmu_sc0002553.1_g000004 Rmu_sc0002553.1_g000005 Rmu_sc0004210.1_g000002 Rmu_sc0004295.1_g000009 Rmu_sc0004295.1_g000028 Rmu_sc0004295.1_g000034 Rmu_sc0005018.1_g000004 Rmu_sc0005018.1_g000007 Rmu_sc0015195.1_g000002 Rmu_sc0017247.1_g000001 Rmu_sc0041438.1_g000001
rosa_roxburghii Rroxscaffold_7G00186520 Rroxscaffold_7G00186550 Rroxscaffold_7G00213300 Rroxscaffold_7G00213340 Rroxscaffold_7G00213380 Rroxscaffold_7G00213400 Rroxscaffold_7G00213450
rosa_rugosa Rorug05G0530300 Rorug05G0531000 Rorug05G0531100 Rorug05G0552500 Rorug05G0552500 Rorug06G0145500
rosa_samantha Rh2AG004400 Rh6AG045600 Rh6AG045900 Rh6AG046200 Rh6AG046500 Rh6AG046700 Rh6AG258500 Rh6BG041200 Rh6BG041600 Rh6BG041700 Rh6BG041900 Rh6BG042000 Rh6BG042500 Rh6BG043000 Rh6BG043100 Rh6BG043200 Rh6BG043300 Rh6BG043400 Rh6BG261900 Rh6CG038700 Rh6CG038900 Rh6CG039100 Rh6CG039400 Rh6CG039700 Rh6CG039800 Rh6CG039900 Rh6CG040000 Rh6CG040100 Rh6CG260800
rosa_wichuraiana Rw6G003950 Rw6G003970 Rw6G003980 Rw6G004010 Rw6G004050 Rw6G004060 Rw6G004070 Rw6G004080 Rw6G022370 Rw6G022380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 621
AciI CCGC 1 cut(s) 657
AclI AACGTT 1 cut(s) 695
AcoI YGGCCR 1 cut(s) 633
AdeI CACNNNGTG 1 cut(s) 392
AfaI GTAC 1 cut(s) 482
AfeI AGCGCT 1 cut(s) 181
AfiI CCNNNNNNNGG 3 cut(s) 349, 439, 621
AgsI TTSAA 2 cut(s) 71, 653
AluBI AGCT 4 cut(s) 83, 278, 311, 515
AluI AGCT 4 cut(s) 83, 278, 311, 515
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 299
Aor51HI AGCGCT 1 cut(s) 181
AoxI GGCC 1 cut(s) 633
ApeKI GCWGC 3 cut(s) 177, 182, 275
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 4 cut(s) 24, 32, 430, 456
AsuHPI GGTGA 1 cut(s) 268
AvaII GGWCC 4 cut(s) 24, 32, 430, 456
BalI TGGCCA 1 cut(s) 635
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 3 cut(s) 169, 189, 287
BccI CCATC 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 299
BfoI RGCGCY 1 cut(s) 183
BglI GCCNNNNNGGC 1 cut(s) 641
BisI GCNGC 3 cut(s) 178, 183, 276
BlsI GCNGC 3 cut(s) 179, 184, 277
Bme18I GGWCC 4 cut(s) 24, 32, 430, 456
BmgT120I GGNCC 4 cut(s) 24, 32, 430, 456
BmiI GGNNCC 2 cut(s) 431, 432
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 3 cut(s) 106, 365, 543
BmuI ACTGGG 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 218
Bsc4I CCNNNNNNNGG 3 cut(s) 349, 439, 621
Bse1I ACTGG 3 cut(s) 195, 219, 351
Bse3DI GCAATG 2 cut(s) 450, 687
BseGI GGATG 3 cut(s) 142, 380, 496
BseLI CCNNNNNNNGG 3 cut(s) 349, 439, 621
BseMI GCAATG 2 cut(s) 450, 687
BseMII CTCAG 2 cut(s) 11, 303
BseNI ACTGG 3 cut(s) 195, 219, 351
BseRI GAGGAG 3 cut(s) 244, 247, 317
BseXI GCAGC 3 cut(s) 169, 189, 287
BsgI GTGCAG 1 cut(s) 168
BshFI GGCC 1 cut(s) 635
BsiHKAI GWGCWC 1 cut(s) 341
BslFI GGGAC 3 cut(s) 207, 269, 416
BslI CCNNNNNNNGG 3 cut(s) 349, 439, 621
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 3 cut(s) 207, 269, 416
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 1 cut(s) 635
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 1 cut(s) 460
BspACI CCGC 1 cut(s) 657
BspANI GGCC 1 cut(s) 635
BspCNI CTCAG 2 cut(s) 12, 304
BspHI TCATGA 1 cut(s) 361
BspLI GGNNCC 2 cut(s) 431, 432
BsrDI GCAATG 2 cut(s) 450, 687
BsrI ACTGG 3 cut(s) 195, 219, 351
BssMI GATC 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 2 cut(s) 20, 312
BstF5I GGATG 3 cut(s) 142, 380, 496
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 1 cut(s) 463
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 1 cut(s) 460
BstMWI GCNNNNNNNGC 2 cut(s) 365, 641
BstV1I GCAGC 3 cut(s) 169, 189, 287
BstV2I GAAGAC 1 cut(s) 78
BsuRI GGCC 1 cut(s) 635
BtsCI GGATG 3 cut(s) 142, 380, 496
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 2 cut(s) 17, 651
Cac8I GCNNGC 1 cut(s) 121
CciI TCATGA 1 cut(s) 361
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 4 cut(s) 24, 32, 430, 456
Csp6I GTAC 1 cut(s) 481
CviAII CATG 6 cut(s) 124, 219, 333, 362, 577, 616
CviJI RGCY 8 cut(s) 83, 278, 311, 359, 368, 416, 515, 635
CviKI_1 RGCY 8 cut(s) 83, 278, 311, 359, 368, 416, 515, 635
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 2 cut(s) 20, 312
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
DraI TTTAAA 1 cut(s) 103
DraIII CACNNNGTG 1 cut(s) 392
EaeI YGGCCR 1 cut(s) 633
EciI GGCGGA 1 cut(s) 672
Eco47I GGWCC 4 cut(s) 24, 32, 430, 456
Eco47III AGCGCT 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 430
FaeI CATG 6 cut(s) 127, 222, 336, 365, 580, 619
FaiI YATR 9 cut(s) 41, 87, 125, 220, 334, 363, 566, 578, 617
FaqI GGGAC 3 cut(s) 207, 269, 416
FatI CATG 6 cut(s) 123, 218, 332, 361, 576, 615
Fnu4HI GCNGC 3 cut(s) 178, 183, 276
FokI GGATG 3 cut(s) 129, 387, 503
Fsp4HI GCNGC 3 cut(s) 178, 183, 276
GlaI GCGC 1 cut(s) 181
GluI GCNGC 3 cut(s) 178, 183, 276
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 1 cut(s) 635
HhaI GCGC 1 cut(s) 182
Hin1II CATG 6 cut(s) 127, 222, 336, 365, 580, 619
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 81
HinfI GANTC 1 cut(s) 266
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 271, 667
Hpy188III TCNNGA 1 cut(s) 362
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 310, 647
HpyCH4IV ACGT 1 cut(s) 695
HpyCH4V TGCA 3 cut(s) 123, 185, 692
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 641
HpyF3I CTNAG 2 cut(s) 20, 312
HpySE526I ACGT 1 cut(s) 695
Hsp92II CATG 6 cut(s) 127, 222, 336, 365, 580, 619
HspAI GCGC 1 cut(s) 180
KflI GGGWCCC 1 cut(s) 430
Kzo9I GATC 1 cut(s) 460
LmnI GCTCC 2 cut(s) 234, 344
LpnPI CCDG 6 cut(s) 133, 176, 200, 332, 534, 649
Lsp1109I GCAGC 3 cut(s) 169, 189, 287
LweI GCATC 3 cut(s) 106, 365, 543
MaeII ACGT 1 cut(s) 695
MalI GATC 1 cut(s) 462
MboI GATC 1 cut(s) 460
MboII GAAGA 2 cut(s) 83, 560
MhlI GDGCHC 1 cut(s) 341
MlsI TGGCCA 1 cut(s) 635
MluNI TGGCCA 1 cut(s) 635
MmeI TCCRAC 4 cut(s) 132, 352, 377, 690
Mox20I TGGCCA 1 cut(s) 635
MscI TGGCCA 1 cut(s) 635
MseI TTAA 6 cut(s) 102, 134, 419, 510, 702, 709
Msp20I TGGCCA 1 cut(s) 635
MspA1I CMGCKG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 616
MwoI GCNNNNNNNGC 2 cut(s) 365, 641
NdeII GATC 1 cut(s) 460
NlaIII CATG 6 cut(s) 127, 222, 336, 365, 580, 619
NlaIV GGNNCC 2 cut(s) 431, 432
PagI TCATGA 1 cut(s) 361
PctI GAATGC 1 cut(s) 616
PfeI GAWTC 1 cut(s) 266
PflMI CCANNNNNTGG 1 cut(s) 621
PkrI GCNGC 3 cut(s) 179, 184, 277
PpuMI RGGWCCY 1 cut(s) 430
Psp1406I AACGTT 1 cut(s) 695
Psp5II RGGWCCY 1 cut(s) 430
PspN4I GGNNCC 2 cut(s) 431, 432
PspPI GGNCC 4 cut(s) 24, 32, 430, 456
PspPPI RGGWCCY 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
SaqAI TTAA 6 cut(s) 102, 134, 419, 510, 702, 709
SatI GCNGC 3 cut(s) 178, 183, 276
Sau3AI GATC 1 cut(s) 460
Sau96I GGNCC 4 cut(s) 24, 32, 430, 456
SduI GDGCHC 1 cut(s) 341
SetI ASST 8 cut(s) 85, 99, 280, 313, 354, 517, 523, 698
SfaNI GCATC 3 cut(s) 106, 365, 543
SinI GGWCC 4 cut(s) 24, 32, 430, 456
SmiI ATTTAAAT 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SsiI CCGC 1 cut(s) 657
SwaI ATTTAAAT 1 cut(s) 103
TaiI ACGT 1 cut(s) 698
TaqI TCGA 1 cut(s) 404
TaqII GACCGA 1 cut(s) 473
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 6 cut(s) 102, 134, 419, 510, 702, 709
Tru9I TTAA 6 cut(s) 102, 134, 419, 510, 702, 709
TscAI CASTG 2 cut(s) 24, 651
TseI GCWGC 3 cut(s) 177, 182, 275
TspDTI ATGAA 6 cut(s) 140, 159, 321, 370, 632, 676
TspRI CASTG 2 cut(s) 24, 651
Van91I CCANNNNNTGG 1 cut(s) 621
VpaK11BI GGWCC 4 cut(s) 24, 32, 430, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.