MD16G1086200.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000284
Physical Location & Seq
Forward (+)
6012203 .. 6012511
309 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1086200.v1.1.491

Sequence Viewer

Length: 309 bp
ATGCAAGAATTAAACGAAAGCAGAGAAGAAATGGAAAAGAGGGTTCATGTTGTGGTGCTTCCATATCAAAGCCAAGGCCACATCAACCCTCTCCTCCAGTTTGCAAAACGCCTTGCCTCCAAAGGCGTCAAGGCCACGTTGGCAACCACCACTTACACGCTCAACTCCACTCGTGTCCCAAACGTCGGCGTCGAGCCCATCTCTGATGGGTTCGACGAGGTCGGCTTTGCTCAAGCCGCAGACGATGAGGACACTTTCCTTCGGTCATTCAAAACCAACGGATCAAGAACCCTATCACAACTCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009072 GO:0009605 GO:0009607 GO:0009617 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032787 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042445 GO:0042537 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045229 GO:0046482 GO:0046527 GO:0047251 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051179 GO:0051239 GO:0051240 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:0098542 GO:1900140 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901657 GO:1901659 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

103

Amino Acids

11.34

Weight (kDa)

5.62

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 14 - 60 8e-07 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05675 AT1G05680
fragaria_vesca FvH4_2g03180 FvH4_2g03250 FvH4_2g03250 FvH4_2g03260 FvH4_2g03280 FvH4_2g03282 FvH4_2g03300 FvH4_2g17430 FvH4_3g07860
malus_domestica MD05G1106600.v1.1 MD10G1111000.v1.1 MD10G1111100.v1.1 MD10G1111300.v1.1 MD15G1305500.v1.1 MD15G1357700.v1.1 MD16G1086200.v1.1
prunus_persica Prupe.1G505100_v2.0.a1 Prupe.1G505200_v2.0.a1 Prupe.6G211600_v2.0.a1 Prupe.8G150600_v2.0.a1 Prupe.8G150700_v2.0.a1 Prupe.8G185900_v2.0.a1 Prupe.8G186000_v2.0.a1 Prupe.8G186100_v2.0.a1 Prupe.8G186200_v2.0.a1 Prupe.I000900_v2.0.a1 Prupe.I001000_v2.0.a1
pyrus_communis pycom10g09600 pycom10g09610 pycom10g09620 pycom15g31960
rosa_chinensis RchiOBHm_Chr6g0248151 RchiOBHm_Chr6g0248201 RchiOBHm_Chr6g0248231 RchiOBHm_Chr6g0248251 RchiOBHm_Chr6g0248261 RchiOBHm_Chr6g0248271 RchiOBHm_Chr6g0248321 RchiOBHm_Chr6g0248331 RchiOBHm_Chr6g0248381 RchiOBHm_Chr6g0248391 RchiOBHm_Chr6g0248401 RchiOBHm_Chr6g0248411 RchiOBHm_Chr6g0248421 RchiOBHm_Chr6g0282101 RchiOBHm_Chr6g0282111
rosa_laevigata RLG00000012908 RLG00000012910 RLG00000015155 RLG00000015156 RLG00000015157 RLG00000015158 RLG00000015159 RLG00000015162
rosa_multiflora Rmu_co8202196.1_g000001 Rmu_co8203792.1_g000001 Rmu_co8228231.1_g000001 Rmu_co8347131.1_g000001 Rmu_sc0000569.1_g000027 Rmu_sc0001700.1_g000052 Rmu_sc0002553.1_g000004 Rmu_sc0002553.1_g000005 Rmu_sc0004210.1_g000002 Rmu_sc0004295.1_g000009 Rmu_sc0004295.1_g000028 Rmu_sc0004295.1_g000034 Rmu_sc0005018.1_g000004 Rmu_sc0005018.1_g000007 Rmu_sc0015195.1_g000002 Rmu_sc0017247.1_g000001 Rmu_sc0041438.1_g000001
rosa_roxburghii Rroxscaffold_7G00186520 Rroxscaffold_7G00186550 Rroxscaffold_7G00213300 Rroxscaffold_7G00213340 Rroxscaffold_7G00213380 Rroxscaffold_7G00213400 Rroxscaffold_7G00213450
rosa_rugosa Rorug05G0530300 Rorug05G0531000 Rorug05G0531100 Rorug05G0552500 Rorug05G0552500 Rorug06G0145500
rosa_samantha Rh2AG004400 Rh6AG045600 Rh6AG045900 Rh6AG046200 Rh6AG046500 Rh6AG046700 Rh6AG258500 Rh6BG041200 Rh6BG041600 Rh6BG041700 Rh6BG041900 Rh6BG042000 Rh6BG042500 Rh6BG043000 Rh6BG043100 Rh6BG043200 Rh6BG043300 Rh6BG043400 Rh6BG261900 Rh6CG038700 Rh6CG038900 Rh6CG039100 Rh6CG039400 Rh6CG039700 Rh6CG039800 Rh6CG039900 Rh6CG040000 Rh6CG040100 Rh6CG260800
rosa_wichuraiana Rw6G003950 Rw6G003970 Rw6G003980 Rw6G004010 Rw6G004050 Rw6G004060 Rw6G004070 Rw6G004080 Rw6G022370 Rw6G022380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 237
AclWI GGATC 1 cut(s) 289
AcyI GRCGYC 2 cut(s) 126, 189
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 271
AlwI GGATC 1 cut(s) 289
AoxI GGCC 2 cut(s) 76, 132
BanII GRGCYC 1 cut(s) 198
BauI CACGAG 1 cut(s) 171
BccI CCATC 2 cut(s) 200, 206
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
BplI GAGNNNNNCTC 2 cut(s) 185, 217
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 216
BsaHI GRCGYC 2 cut(s) 126, 189
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 83
BshFI GGCC 2 cut(s) 78, 134
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 2 cut(s) 78, 134
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 1 cut(s) 281
BspACI CCGC 1 cut(s) 237
BspANI GGCC 2 cut(s) 78, 134
BspPI GGATC 1 cut(s) 289
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 281
BssNI GRCGYC 2 cut(s) 126, 189
BssSI CACGAG 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 73
Bst2BI CACGAG 1 cut(s) 171
BstACI GRCGYC 2 cut(s) 126, 189
BstKTI GATC 1 cut(s) 284
BstMBI GATC 1 cut(s) 281
BstMWI GCNNNNNNNGC 2 cut(s) 140, 236
BsuRI GGCC 2 cut(s) 78, 134
CseI GACGC 2 cut(s) 115, 178
CviAII CATG 1 cut(s) 47
CviJI RGCY 6 cut(s) 72, 78, 134, 196, 225, 236
CviKI_1 RGCY 6 cut(s) 72, 78, 134, 196, 225, 236
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 1 cut(s) 50
FaiI YATR 3 cut(s) 48, 64, 307
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 237
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 237
GluI GCNGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 2 cut(s) 78, 134
HgaI GACGC 2 cut(s) 115, 178
Hin1I GRCGYC 2 cut(s) 126, 189
Hin1II CATG 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 285
Hpy99I CGWCG 3 cut(s) 188, 194, 218
HpyAV CCTTC 1 cut(s) 269
HpyCH4IV ACGT 2 cut(s) 137, 183
HpyCH4V TGCA 2 cut(s) 4, 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 236
HpySE526I ACGT 2 cut(s) 137, 183
Hsp92I GRCGYC 2 cut(s) 126, 189
Hsp92II CATG 1 cut(s) 50
Kzo9I GATC 1 cut(s) 281
LpnPI CCDG 1 cut(s) 110
MaeII ACGT 2 cut(s) 137, 183
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 1 cut(s) 8
MnlI CCTC 6 cut(s) 33, 99, 104, 127, 211, 241
MseI TTAA 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 140, 236
NdeII GATC 1 cut(s) 281
NlaIII CATG 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 1 cut(s) 281
SduI GDGCHC 1 cut(s) 198
SetI ASST 3 cut(s) 140, 186, 222
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 237
StyI CCWWGG 1 cut(s) 73
TaiI ACGT 2 cut(s) 140, 186
TaqI TCGA 2 cut(s) 192, 213
TaqII GACCGA 1 cut(s) 252
TasI AATT 1 cut(s) 8
TauI GCSGC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 294
Tth111I GACNNNGTC 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.