Rmu_sc0004295.1_g000034

UDP-glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004295.1
OG0000284
Physical Location & Seq
Reverse (-)
170596 .. 171522
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004295.1_g000034.1.cds

Sequence Viewer

Length: 804 bp
atgcacagaggatccagtggcattgagctggagacaatctctgatggttacgacgaaggttggagagacaaggcagaaagtatacaagcctatattgagaggttttggcaagtaggaccagagacattggctgagctcttggagaagctttcgagctcagggtgcccggttgactgtattgtttatgattcggtcatgccatgggctttggatgttgccaagaagtttggaatagttggggctgccttcttcactcagtcttgtgttgttgacaacatctactatcatgtcaacaaagggctgctgaaacttcctctttctgaatctgaaacttcgcttcccgggatgccaccacttcggcccgtggattttccatcgtttatgtatgatttggggtcttatccagcttactttgatgttgttcttggtcagttctccaatgttgaaaaagctgattggatcctttgcaacacgttttatgagttggaagaacaagtggtggatcggatgtctgatttttggcctgcgaggaccatcggaccaacaataccatcaggttacttgaataaacagcttgaagatgacaaagaatatggtgtcaacctctttaaatccaacaatgatgcctgcatgaaatggctcaatgaacagaaaaaggggtctgttgtctatgtgtcatttggtagtggagcaaagcttaacaccgagcaaatggaggaactggcatggggtttaaggaggaccaaaagcaagttcttgtgggtggtcagagaatctgaagcagataaacttataaaaggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210
Pfam Domains
Protein Families
UDPGT

Protein Analysis

267

Amino Acids

30.23

Weight (kDa)

4.76

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05675 AT1G05680
fragaria_vesca FvH4_2g03180 FvH4_2g03250 FvH4_2g03250 FvH4_2g03260 FvH4_2g03280 FvH4_2g03282 FvH4_2g03300 FvH4_2g17430 FvH4_3g07860
malus_domestica MD05G1106600.v1.1 MD10G1111000.v1.1 MD10G1111100.v1.1 MD10G1111300.v1.1 MD15G1305500.v1.1 MD15G1357700.v1.1 MD16G1086200.v1.1
prunus_persica Prupe.1G505100_v2.0.a1 Prupe.1G505200_v2.0.a1 Prupe.6G211600_v2.0.a1 Prupe.8G150600_v2.0.a1 Prupe.8G150700_v2.0.a1 Prupe.8G185900_v2.0.a1 Prupe.8G186000_v2.0.a1 Prupe.8G186100_v2.0.a1 Prupe.8G186200_v2.0.a1 Prupe.I000900_v2.0.a1 Prupe.I001000_v2.0.a1
pyrus_communis pycom10g09600 pycom10g09610 pycom10g09620 pycom15g31960
rosa_chinensis RchiOBHm_Chr6g0248151 RchiOBHm_Chr6g0248201 RchiOBHm_Chr6g0248231 RchiOBHm_Chr6g0248251 RchiOBHm_Chr6g0248261 RchiOBHm_Chr6g0248271 RchiOBHm_Chr6g0248321 RchiOBHm_Chr6g0248331 RchiOBHm_Chr6g0248381 RchiOBHm_Chr6g0248391 RchiOBHm_Chr6g0248401 RchiOBHm_Chr6g0248411 RchiOBHm_Chr6g0248421 RchiOBHm_Chr6g0282101 RchiOBHm_Chr6g0282111
rosa_laevigata RLG00000012908 RLG00000012910 RLG00000015155 RLG00000015156 RLG00000015157 RLG00000015158 RLG00000015159 RLG00000015162
rosa_multiflora Rmu_co8202196.1_g000001 Rmu_co8203792.1_g000001 Rmu_co8228231.1_g000001 Rmu_co8347131.1_g000001 Rmu_sc0000569.1_g000027 Rmu_sc0001700.1_g000052 Rmu_sc0002553.1_g000004 Rmu_sc0002553.1_g000005 Rmu_sc0004210.1_g000002 Rmu_sc0004295.1_g000009 Rmu_sc0004295.1_g000028 Rmu_sc0004295.1_g000034 Rmu_sc0005018.1_g000004 Rmu_sc0005018.1_g000007 Rmu_sc0015195.1_g000002 Rmu_sc0017247.1_g000001 Rmu_sc0041438.1_g000001
rosa_roxburghii Rroxscaffold_7G00186520 Rroxscaffold_7G00186550 Rroxscaffold_7G00213300 Rroxscaffold_7G00213340 Rroxscaffold_7G00213380 Rroxscaffold_7G00213400 Rroxscaffold_7G00213450
rosa_rugosa Rorug05G0530300 Rorug05G0531000 Rorug05G0531100 Rorug05G0552500 Rorug05G0552500 Rorug06G0145500
rosa_samantha Rh2AG004400 Rh6AG045600 Rh6AG045900 Rh6AG046200 Rh6AG046500 Rh6AG046700 Rh6AG258500 Rh6BG041200 Rh6BG041600 Rh6BG041700 Rh6BG041900 Rh6BG042000 Rh6BG042500 Rh6BG043000 Rh6BG043100 Rh6BG043200 Rh6BG043300 Rh6BG043400 Rh6BG261900 Rh6CG038700 Rh6CG038900 Rh6CG039100 Rh6CG039400 Rh6CG039700 Rh6CG039800 Rh6CG039900 Rh6CG040000 Rh6CG040100 Rh6CG260800
rosa_wichuraiana Rw6G003950 Rw6G003970 Rw6G003980 Rw6G004010 Rw6G004050 Rw6G004060 Rw6G004070 Rw6G004080 Rw6G022370 Rw6G022380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 794
AccB1I GGYRCC 1 cut(s) 162
AccI GTMKAC 1 cut(s) 82
AclWI GGATC 5 cut(s) 6, 19, 454, 467, 510
AcuI CTGAAG 1 cut(s) 798
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 3 cut(s) 446, 565, 578
AjuI GAANNNNNNNTTGG 2 cut(s) 737, 769
AluBI AGCT 8 cut(s) 28, 136, 148, 156, 407, 452, 574, 697
AluI AGCT 8 cut(s) 28, 136, 148, 156, 407, 452, 574, 697
Alw21I GWGCWC 2 cut(s) 138, 158
Alw26I GTCTC 3 cut(s) 26, 60, 116
AlwI GGATC 5 cut(s) 6, 19, 454, 467, 510
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 2 cut(s) 359, 521
ApeKI GCWGC 2 cut(s) 242, 301
AspS9I GGNCC 5 cut(s) 116, 360, 531, 539, 741
AsuC2I CCSGG 3 cut(s) 167, 342, 343
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 4 cut(s) 116, 531, 539, 741
BaeGI GKGCMC 1 cut(s) 167
BamHI GGATCC 2 cut(s) 11, 459
BanI GGYRCC 1 cut(s) 162
BanII GRGCYC 2 cut(s) 138, 158
Bbv12I GWGCWC 2 cut(s) 138, 158
BbvI GCAGC 2 cut(s) 229, 288
BccI CCATC 4 cut(s) 38, 382, 542, 559
BcnI CCSGG 3 cut(s) 167, 342, 343
BcoDI GTCTC 3 cut(s) 26, 60, 116
BfaI CTAG 1 cut(s) 802
BisI GCNGC 2 cut(s) 243, 302
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 2 cut(s) 244, 303
Bme1390I CCNGG 3 cut(s) 167, 342, 343
Bme18I GGWCC 4 cut(s) 116, 531, 539, 741
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 5 cut(s) 116, 360, 531, 539, 741
BmiI GGNNCC 3 cut(s) 13, 164, 461
BmrFI CCNGG 3 cut(s) 167, 342, 343
BmsI GCATC 2 cut(s) 336, 613
BplI GAGNNNNNCTC 2 cut(s) 23, 55
BpmI CTGGAG 1 cut(s) 50
Bpu10I CCTNAGC 1 cut(s) 157
Bpu1102I GCTNAGC 1 cut(s) 132
BpuMI CCSGG 3 cut(s) 167, 342, 343
BsaJI CCNNGG 3 cut(s) 200, 341, 363
Bse1I ACTGG 2 cut(s) 15, 726
BseDI CCNNGG 3 cut(s) 200, 341, 363
BseGI GGATG 3 cut(s) 217, 351, 513
BseMII CTCAG 3 cut(s) 123, 171, 269
BseNI ACTGG 2 cut(s) 15, 726
BseSI GKGCMC 1 cut(s) 167
BseXI GCAGC 2 cut(s) 229, 288
BshFI GGCC 2 cut(s) 361, 523
BshNI GGYRCC 1 cut(s) 162
BsiHKAI GWGCWC 2 cut(s) 138, 158
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 2 cut(s) 167, 342
BsmAI GTCTC 3 cut(s) 26, 60, 116
BsnI GGCC 2 cut(s) 361, 523
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 3 cut(s) 138, 158, 167
Bsp143I GATC 3 cut(s) 11, 459, 502
Bsp1720I GCTNAGC 1 cut(s) 132
Bsp19I CCATGG 1 cut(s) 200
BspANI GGCC 2 cut(s) 361, 523
BspCNI CTCAG 3 cut(s) 124, 170, 268
BspLI GGNNCC 3 cut(s) 13, 164, 461
BspPI GGATC 5 cut(s) 6, 19, 454, 467, 510
BspT107I GGYRCC 1 cut(s) 162
BsrI ACTGG 2 cut(s) 15, 726
BssECI CCNNGG 3 cut(s) 200, 341, 363
BssMI GATC 3 cut(s) 11, 459, 502
BssNAI GTATAC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 200
Bst1107I GTATAC 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 525, 628
BstDEI CTNAG 3 cut(s) 132, 157, 255
BstDSI CCRYGG 2 cut(s) 200, 363
BstF5I GGATG 3 cut(s) 217, 351, 513
BstKTI GATC 3 cut(s) 14, 462, 505
BstMAI GTCTC 3 cut(s) 26, 60, 116
BstMBI GATC 3 cut(s) 11, 459, 502
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstSCI CCNGG 3 cut(s) 165, 340, 341
BstSLI GKGCMC 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 229, 288
BstX2I RGATCY 2 cut(s) 11, 459
BstYI RGATCY 2 cut(s) 11, 459
BstZ17I GTATAC 1 cut(s) 83
BsuRI GGCC 2 cut(s) 361, 523
BtgI CCRYGG 2 cut(s) 200, 363
BtsCI GGATG 3 cut(s) 217, 351, 513
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 525, 628
Cfr13I GGNCC 5 cut(s) 116, 360, 531, 539, 741
Cfr9I CCCGGG 1 cut(s) 341
CviAII CATG 5 cut(s) 196, 201, 287, 631, 726
DdeI CTNAG 3 cut(s) 132, 157, 255
DpnI GATC 3 cut(s) 13, 461, 504
DpnII GATC 3 cut(s) 11, 459, 502
DraI TTTAAA 1 cut(s) 610
Ecl136II GAGCTC 2 cut(s) 136, 156
Eco130I CCWWGG 1 cut(s) 200
Eco24I GRGCYC 2 cut(s) 138, 158
Eco47I GGWCC 4 cut(s) 116, 531, 539, 741
Eco53kI GAGCTC 2 cut(s) 136, 156
Eco57I CTGAAG 1 cut(s) 798
Eco88I CYCGRG 1 cut(s) 341
EcoICRI GAGCTC 2 cut(s) 136, 156
EcoT14I CCWWGG 1 cut(s) 200
EcoT38I GRGCYC 2 cut(s) 138, 158
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 5 cut(s) 199, 204, 290, 634, 729
FatI CATG 5 cut(s) 195, 200, 286, 630, 725
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 243, 302
FokI GGATG 3 cut(s) 224, 358, 520
FriOI GRGCYC 2 cut(s) 138, 158
Fsp4HI GCNGC 2 cut(s) 243, 302
FspBI CTAG 1 cut(s) 802
GluI GCNGC 2 cut(s) 243, 302
GsuI CTGGAG 1 cut(s) 50
HaeIII GGCC 2 cut(s) 361, 523
HapII CCGG 2 cut(s) 167, 342
Hin1II CATG 5 cut(s) 199, 204, 290, 634, 729
HincII GTYRAC 4 cut(s) 172, 271, 292, 601
HindII GTYRAC 4 cut(s) 172, 271, 292, 601
HindIII AAGCTT 2 cut(s) 146, 695
HinfI GANTC 3 cut(s) 188, 323, 773
HpaII CCGG 2 cut(s) 167, 342
Hpy166II GTNNAC 5 cut(s) 83, 172, 271, 292, 601
Hpy188I TCNGA 8 cut(s) 43, 322, 328, 507, 514, 539, 770, 778
Hpy8I GTNNAC 5 cut(s) 83, 172, 271, 292, 601
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 50, 256
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 3 cut(s) 4, 468, 630
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 3 cut(s) 132, 157, 255
HpySE526I ACGT 1 cut(s) 473
Hsp92II CATG 5 cut(s) 199, 204, 290, 634, 729
Kzo9I GATC 3 cut(s) 11, 459, 502
LmnI GCTCC 1 cut(s) 689
Lsp1109I GCAGC 2 cut(s) 229, 288
LweI GCATC 2 cut(s) 336, 613
MaeI CTAG 1 cut(s) 802
MaeII ACGT 1 cut(s) 473
MaeIII GTNAC 2 cut(s) 47, 557
MalI GATC 3 cut(s) 13, 461, 504
MboI GATC 3 cut(s) 11, 459, 502
MboII GAAGA 3 cut(s) 241, 500, 590
MflI RGATCY 2 cut(s) 11, 459
MhlI GDGCHC 3 cut(s) 138, 158, 167
MmeI TCCRAC 3 cut(s) 41, 465, 639
MnlI CCTC 6 cut(s) 93, 324, 522, 614, 709, 732
MseI TTAA 3 cut(s) 609, 699, 734
MspI CCGG 2 cut(s) 167, 342
MspR9I CCNGG 3 cut(s) 167, 342, 343
MwoI GCNNNNNNNGC 1 cut(s) 162
NciI CCSGG 3 cut(s) 167, 342, 343
NcoI CCATGG 1 cut(s) 200
NdeII GATC 3 cut(s) 11, 459, 502
NlaIII CATG 5 cut(s) 199, 204, 290, 634, 729
NlaIV GGNNCC 3 cut(s) 13, 164, 461
PfeI GAWTC 3 cut(s) 188, 323, 773
PkrI GCNGC 2 cut(s) 244, 303
PsiI TTATAA 1 cut(s) 794
Psp124BI GAGCTC 2 cut(s) 138, 158
PspN4I GGNNCC 3 cut(s) 13, 164, 461
PspPI GGNCC 5 cut(s) 116, 360, 531, 539, 741
PsuI RGATCY 2 cut(s) 11, 459
SacI GAGCTC 2 cut(s) 138, 158
SaqAI TTAA 3 cut(s) 609, 699, 734
SatI GCNGC 2 cut(s) 243, 302
Sau3AI GATC 3 cut(s) 11, 459, 502
Sau96I GGNCC 5 cut(s) 116, 360, 531, 539, 741
ScrFI CCNGG 3 cut(s) 167, 342, 343
SduI GDGCHC 3 cut(s) 138, 158, 167
SfaNI GCATC 2 cut(s) 336, 613
SinI GGWCC 4 cut(s) 116, 531, 539, 741
SmaI CCCGGG 1 cut(s) 343
SspMI CTAG 1 cut(s) 802
SstI GAGCTC 2 cut(s) 138, 158
StyD4I CCNGG 3 cut(s) 165, 340, 341
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 476
TaqI TCGA 1 cut(s) 152
TaqII GACCGA 1 cut(s) 181
TfiI GAWTC 3 cut(s) 188, 323, 773
Tru1I TTAA 3 cut(s) 609, 699, 734
Tru9I TTAA 3 cut(s) 609, 699, 734
TscAI CASTG 1 cut(s) 22
TseI GCWGC 2 cut(s) 242, 301
TspDTI ATGAA 2 cut(s) 647, 660
TspMI CCCGGG 1 cut(s) 341
TspRI CASTG 1 cut(s) 22
VpaK11BI GGWCC 4 cut(s) 116, 531, 539, 741
XmaI CCCGGG 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 82
XspI CTAG 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.