Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003266

Physical Location & Seq

Genomic Coordinates Reverse (-)

7350616 .. 7351917

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12381.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGGAAGGAGGAATGGACCTAAAAGACAAAAGAAATTCCTCGAAAATTGGGGTTCCCTTCCAAGTGAGCTTCTTGATTCGATACTCGAAAGCTTGCCATCCATCTTCGACTACATCCAGTTCAGTTTGGTTTGCAAGCATTGGCGAAAGGTTGCGTTAAATCAGAAGGAGCAGCGTCTCAGATCTTGTCACAAACAGCTAGCTCCATTGCTGTTGCTTAATTCAACCAAGAACAGCAACCAAACGCGTGCCTTGTACAGTGTCACACAAGGTAAGGTTGTTCATAGATTTAATCTCCCTAATCATCGTTACGACGAGGATACCTGGTTGTGTGGTTCTTCCCATGGTTGGTTGGCTTATGCCGACGCCAGTTTCATGGTGACCCTAGTAAACCCTTTCACCAGAGGCACCATTAGGCTTCCACAAGTCATGGAAGTTGTGAAGTCCTCCAGACCAGAATGCAACTCGGAGTTTCAGATCAGTAAAGTTGTATTGTCTGCTAACCCTAGTTTGTTTCCTAATGACTATGAAGTTCTTGTTATCTTTGAGAATGATGATGGGGTTACCAAGGAACTAGCCCATTTTAAGTCCGGGGACAATTCCTGGACTCGCTCCGATAGAAGAATGATCGAGGGACTTGATATTATTGATGCAACTTATTACAAAGGCCGGTTTGTAGCTCTAACTGGTTTCGATTCTGATCCCGACCATGGTGTTAGTAAGGTTCATCCAAGCATAGAATGCATCTCACACCCACACGAACTTTTCCTTCAGAAGACGTCATTTCTTGTGAAATCGACCTGTGAGGATCTACTGCTCGTAAATACAAGTTTAGATATGGGAAGGTGTTTCGGCGGCACCAGGATTTTCAAGTTGGGAAGGTCATGCGGACCCCAATGGGTAAAGATGGAGAGTTTTGGGACTGATGCTTTGTTTCTGGATAACATGAATGCCATTTGCGTTTCTGCTTCATACTCGGGGTGTCATCCAAATTCGATATACCTATTGGAAGGTGTTGTCAACTTAAGTAGCGGAGAGGAGACGTGGTTTAAACGACCAATAACATGGGGGACAAGATCAATAACATGGATCGCACCCACTATGGCGGATGAAATCTCAGCTGATGTGAGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

379

Amino Acids

42.81

Weight (kDa)

7.6

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	17 - 54	5.6e-07	F-box-like
F-box	PF00646	17 - 55	1.4e-06	F-box domain
Beta-prop_KIB1-4	PF03478	85 - 337	1.2e-36	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12381
malus_domestica	MD05G1250900.v1.1 MD10G1231500.v1.1
prunus_persica	Prupe.6G183700_v2.0.a1 Prupe.6G184200_v2.0.a1 Prupe.6G184600_v2.0.a1 Prupe.8G064600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020191 RchiOBHm_Chr5g0020201
rosa_laevigata	RLG00000032508 RLG00000032510 RLG00000032511 RLG00000032585 RLG00000033606
rosa_multiflora	Rmu_sc0002087.1_g000011 Rmu_sc0002087.1_g000012 Rmu_ssc0000244.1_g000031
rosa_roxburghii	Rroxscaffold_1G00057970 Rroxscaffold_1G00058000 Rroxscaffold_1G00058010
rosa_rugosa	Rorug05G0057600 Rorug05G0057700 Rorug05G0057800
rosa_samantha	Rh5AG148000 Rh5AG148100 Rh5BG147600 Rh5BG147700 Rh5BG147800 Rh5CG159000 Rh5CG159100 Rh5CG274700 Rh5DG146800 Rh5DG146900 Rh5DG153600 Rh5DG252100
rosa_wichuraiana	Rw5G013090 Rw5G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	782
AccB1I	GGYRCC	2 cut(s)	407, 857
AccII	CGCG	1 cut(s)	247
AciI	CCGC	4 cut(s)	855, 888, 1032, 1106
AclWI	GGATC	3 cut(s)	695, 816, 1097
AcsI	RAATTY	2 cut(s)	35, 991
AcuI	CTGAAG	1 cut(s)	755
AcyI	GRCGYC	2 cut(s)	366, 779
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	348, 710
AflII	CTTAAG	1 cut(s)	1024
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	225, 871
AjiI	CACGTC	1 cut(s)	1044
AjnI	CCWGG	3 cut(s)	323, 602, 860
AluBI	AGCT	6 cut(s)	70, 93, 199, 203, 680, 1121
AluI	AGCT	6 cut(s)	70, 93, 199, 203, 680, 1121
Alw26I	GTCTC	2 cut(s)	182, 1034
AlwI	GGATC	3 cut(s)	695, 816, 1097
Ama87I	CYCGRG	1 cut(s)	976
AoxI	GGCC	1 cut(s)	667
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	2 cut(s)	35, 991
ArsI	GACNNNNNNTTYG	2 cut(s)	913, 945
AspS9I	GGNCC	2 cut(s)	17, 890
AsuC2I	CCSGG	1 cut(s)	592
AsuHPI	GGTGA	2 cut(s)	391, 391
AsuNHI	GCTAGC	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	976
AvaII	GGWCC	2 cut(s)	17, 890
BanI	GGYRCC	2 cut(s)	407, 857
BbsI	GAAGAC	1 cut(s)	782
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	4 cut(s)	106, 110, 551, 901
BciT130I	CCWGG	3 cut(s)	325, 604, 862
BciVI	GTATCC	1 cut(s)	313
BcnI	CCSGG	1 cut(s)	592
BcoDI	GTCTC	2 cut(s)	182, 1034
BfaI	CTAG	4 cut(s)	200, 386, 507, 575
BfrI	CTTAAG	1 cut(s)	1024
BfuI	GTATCC	1 cut(s)	313
BglII	AGATCT	1 cut(s)	182
BisI	GCNGC	2 cut(s)	173, 856
BlsI	GCNGC	2 cut(s)	174, 857
Bme1390I	CCNGG	4 cut(s)	325, 592, 604, 862
Bme18I	GGWCC	2 cut(s)	17, 890
BmeT110I	CYCGRG	1 cut(s)	976
BmgBI	CACGTC	1 cut(s)	1044
BmgT120I	GGNCC	2 cut(s)	17, 890
BmiI	GGNNCC	4 cut(s)	55, 409, 859, 892
BmrFI	CCNGG	4 cut(s)	325, 592, 604, 862
BmsI	GCATC	3 cut(s)	640, 753, 916
BmtI	GCTAGC	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	782
BpmI	CTGGAG	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	592
BsaBI	GATNNNNATC	1 cut(s)	699
BsaHI	GRCGYC	2 cut(s)	366, 779
BsaJI	CCNNGG	4 cut(s)	343, 567, 591, 709
BsaXI	ACNNNNNCTCC	2 cut(s)	1031, 1061
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 710
Bse118I	RCCGGY	1 cut(s)	669
Bse1I	ACTGG	3 cut(s)	118, 369, 691
Bse3DI	GCAATG	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	3 cut(s)	325, 604, 862
BseDI	CCNNGG	4 cut(s)	343, 567, 591, 709
BseGI	GGATG	5 cut(s)	98, 114, 727, 985, 1114
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	2 cut(s)	348, 710
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	193, 1131
BseNI	ACTGG	3 cut(s)	118, 369, 691
BseRI	GAGGAG	1 cut(s)	1052
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	669
BshNI	GGYRCC	2 cut(s)	407, 857
BsiHKCI	CYCGRG	1 cut(s)	976
BsiSI	CCGG	2 cut(s)	591, 670
BslFI	GGGAC	4 cut(s)	608, 648, 934, 1084
BslI	CCNNNNNNNGG	2 cut(s)	348, 710
BsmAI	GTCTC	2 cut(s)	182, 1034
BsmBI	CGTCTC	2 cut(s)	182, 1034
BsmFI	GGGAC	4 cut(s)	608, 648, 934, 1084
BsmI	GAATGC	3 cut(s)	464, 746, 955
BsnI	GGCC	1 cut(s)	669
BsoBI	CYCGRG	1 cut(s)	976
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	7 cut(s)	182, 477, 627, 700, 808, 1076, 1089
Bsp19I	CCATGG	2 cut(s)	343, 709
BspACI	CCGC	4 cut(s)	855, 888, 1032, 1106
BspANI	GGCC	1 cut(s)	669
BspCNI	CTCAG	2 cut(s)	192, 1130
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	4 cut(s)	55, 409, 859, 892
BspOI	GCTAGC	1 cut(s)	203
BspPI	GGATC	3 cut(s)	695, 816, 1097
BspT107I	GGYRCC	2 cut(s)	407, 857
BspTI	CTTAAG	1 cut(s)	1024
BsrDI	GCAATG	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	669
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	118, 369, 691
BssAI	RCCGGY	1 cut(s)	669
BssECI	CCNNGG	4 cut(s)	343, 567, 591, 709
BssMI	GATC	7 cut(s)	182, 477, 627, 700, 808, 1076, 1089
BssNI	GRCGYC	2 cut(s)	366, 779
BssT1I	CCWWGG	3 cut(s)	343, 567, 709
Bst2UI	CCWGG	3 cut(s)	325, 604, 862
Bst4CI	ACNGT	1 cut(s)	260
BstACI	GRCGYC	2 cut(s)	366, 779
BstAFI	CTTAAG	1 cut(s)	1024
BstAPI	GCANNNNNTGC	1 cut(s)	741
BstAUI	TGTACA	1 cut(s)	255
BstC8I	GCNNGC	4 cut(s)	95, 137, 201, 249
BstDEI	CTNAG	2 cut(s)	179, 1117
BstDSI	CCRYGG	2 cut(s)	343, 709
BstEII	GGTNACC	2 cut(s)	379, 562
BstF5I	GGATG	5 cut(s)	98, 114, 727, 985, 1114
BstFNI	CGCG	1 cut(s)	247
BstKTI	GATC	7 cut(s)	185, 480, 630, 703, 811, 1079, 1092
BstMAI	GTCTC	2 cut(s)	182, 1034
BstMBI	GATC	7 cut(s)	182, 477, 627, 700, 808, 1076, 1089
BstMWI	GCNNNNNNNGC	1 cut(s)	741
BstNI	CCWGG	3 cut(s)	325, 604, 862
BstPI	GGTNACC	2 cut(s)	379, 562
BstSCI	CCNGG	4 cut(s)	323, 590, 602, 860
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	782
BstX2I	RGATCY	2 cut(s)	182, 808
BstXI	CCANNNNNNTGG	2 cut(s)	376, 1065
BstYI	RGATCY	2 cut(s)	182, 808
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	669
BtgI	CCRYGG	2 cut(s)	343, 709
BtrI	CACGTC	1 cut(s)	1044
BtsCI	GGATG	5 cut(s)	98, 114, 727, 985, 1114
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	4 cut(s)	95, 137, 201, 249
Cfr10I	RCCGGY	1 cut(s)	669
Cfr13I	GGNCC	2 cut(s)	17, 890
CseI	GACGC	2 cut(s)	164, 374
CsiI	ACCWGGT	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	8 cut(s)	344, 376, 430, 710, 885, 946, 1065, 1086
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	179, 1117
DpnI	GATC	7 cut(s)	184, 479, 629, 702, 810, 1078, 1091
DpnII	GATC	7 cut(s)	182, 477, 627, 700, 808, 1076, 1089
DraI	TTTAAA	1 cut(s)	1051
EciI	GGCGGA	1 cut(s)	1121
Eco130I	CCWWGG	3 cut(s)	343, 567, 709
Eco47I	GGWCC	2 cut(s)	17, 890
Eco57I	CTGAAG	1 cut(s)	755
Eco88I	CYCGRG	1 cut(s)	976
Eco91I	GGTNACC	2 cut(s)	379, 562
EcoO65I	GGTNACC	2 cut(s)	379, 562
EcoRII	CCWGG	3 cut(s)	323, 602, 860
EcoT14I	CCWWGG	3 cut(s)	343, 567, 709
EcoT22I	ATGCAT	1 cut(s)	746
ErhI	CCWWGG	3 cut(s)	343, 567, 709
Esp3I	CGTCTC	2 cut(s)	182, 1034
FaeI	CATG	8 cut(s)	347, 379, 433, 713, 888, 949, 1068, 1089
FaqI	GGGAC	4 cut(s)	608, 648, 934, 1084
FatI	CATG	8 cut(s)	343, 375, 429, 709, 884, 945, 1064, 1085
Fnu4HI	GCNGC	2 cut(s)	173, 856
FokI	GGATG	5 cut(s)	85, 101, 714, 972, 1121
Fsp4HI	GCNGC	2 cut(s)	173, 856
FspBI	CTAG	4 cut(s)	200, 386, 507, 575
GluI	GCNGC	2 cut(s)	173, 856
GsuI	CTGGAG	1 cut(s)	433
HaeIII	GGCC	1 cut(s)	669
HapII	CCGG	2 cut(s)	591, 670
HgaI	GACGC	2 cut(s)	164, 374
Hin1I	GRCGYC	2 cut(s)	366, 779
Hin1II	CATG	8 cut(s)	347, 379, 433, 713, 888, 949, 1068, 1089
HincII	GTYRAC	1 cut(s)	1021
HindII	GTYRAC	1 cut(s)	1021
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	3 cut(s)	77, 607, 695
HpaII	CCGG	2 cut(s)	591, 670
HphI	GGTGA	2 cut(s)	391, 391
Hpy166II	GTNNAC	2 cut(s)	391, 1021
Hpy188I	TCNGA	7 cut(s)	165, 182, 469, 477, 616, 700, 774
Hpy188III	TCNNGA	4 cut(s)	74, 450, 704, 938
Hpy8I	GTNNAC	2 cut(s)	391, 1021
Hpy99I	CGWCG	2 cut(s)	317, 368
HpyAV	CCTTC	6 cut(s)	68, 160, 779, 837, 873, 1004
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	2 cut(s)	779, 1043
HpyCH4V	TGCA	4 cut(s)	135, 462, 653, 744
HpyF10VI	GCNNNNNNNGC	1 cut(s)	741
HpyF3I	CTNAG	2 cut(s)	179, 1117
HpySE526I	ACGT	2 cut(s)	779, 1043
Hsp92I	GRCGYC	2 cut(s)	366, 779
Hsp92II	CATG	8 cut(s)	347, 379, 433, 713, 888, 949, 1068, 1089
Kzo9I	GATC	7 cut(s)	182, 477, 627, 700, 808, 1076, 1089
LmnI	GCTCC	3 cut(s)	169, 208, 617
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	3 cut(s)	640, 753, 916
MabI	ACCWGGT	1 cut(s)	323
MaeI	CTAG	4 cut(s)	200, 386, 507, 575
MaeII	ACGT	2 cut(s)	779, 1043
MaeIII	GTNAC	5 cut(s)	188, 262, 308, 379, 562
MalI	GATC	7 cut(s)	184, 479, 629, 702, 810, 1078, 1091
MboI	GATC	7 cut(s)	182, 477, 627, 700, 808, 1076, 1089
MboII	GAAGA	4 cut(s)	97, 330, 633, 787
MflI	RGATCY	2 cut(s)	182, 808
MluCI	AATT	5 cut(s)	35, 46, 220, 598, 991
MluI	ACGCGT	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	601
MnlI	CCTC	9 cut(s)	3, 50, 310, 398, 457, 625, 799, 1030, 1122
Mph1103I	ATGCAT	1 cut(s)	746
MseI	TTAA	6 cut(s)	158, 219, 291, 585, 1025, 1050
MspA1I	CMGCKG	1 cut(s)	1121
MspCI	CTTAAG	1 cut(s)	1024
MspI	CCGG	2 cut(s)	591, 670
MspR9I	CCNGG	4 cut(s)	325, 592, 604, 862
MssI	GTTTAAAC	1 cut(s)	1051
Mva1269I	GAATGC	3 cut(s)	464, 746, 955
MvaI	CCWGG	3 cut(s)	325, 604, 862
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	741
NciI	CCSGG	1 cut(s)	592
NcoI	CCATGG	2 cut(s)	343, 709
NdeII	GATC	7 cut(s)	182, 477, 627, 700, 808, 1076, 1089
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	8 cut(s)	347, 379, 433, 713, 888, 949, 1068, 1089
NlaIV	GGNNCC	4 cut(s)	55, 409, 859, 892
NmuCI	GTSAC	3 cut(s)	188, 262, 379
NsiI	ATGCAT	1 cut(s)	746
PctI	GAATGC	3 cut(s)	464, 746, 955
PfeI	GAWTC	2 cut(s)	77, 695
PfoI	TCCNGGA	1 cut(s)	602
PkrI	GCNGC	2 cut(s)	174, 857
PleI	GAGTC	1 cut(s)	601
PmeI	GTTTAAAC	1 cut(s)	1051
PpsI	GAGTC	1 cut(s)	601
Psp6I	CCWGG	3 cut(s)	323, 602, 860
PspEI	GGTNACC	2 cut(s)	379, 562
PspGI	CCWGG	3 cut(s)	323, 602, 860
PspN4I	GGNNCC	4 cut(s)	55, 409, 859, 892
PspPI	GGNCC	2 cut(s)	17, 890
PsuI	RGATCY	2 cut(s)	182, 808
PvuII	CAGCTG	1 cut(s)	1121
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	6 cut(s)	158, 219, 291, 585, 1025, 1050
SatI	GCNGC	2 cut(s)	173, 856
Sau3AI	GATC	7 cut(s)	182, 477, 627, 700, 808, 1076, 1089
Sau96I	GGNCC	2 cut(s)	17, 890
SchI	GAGTC	1 cut(s)	601
ScrFI	CCNGG	4 cut(s)	325, 592, 604, 862
SexAI	ACCWGGT	1 cut(s)	323
SfaNI	GCATC	3 cut(s)	640, 753, 916
SinI	GGWCC	2 cut(s)	17, 890
SmlI	CTYRAG	1 cut(s)	1024
SmoI	CTYRAG	1 cut(s)	1024
Sse9I	AATT	5 cut(s)	35, 46, 220, 598, 991
SsiI	CCGC	4 cut(s)	855, 888, 1032, 1106
SspMI	CTAG	4 cut(s)	200, 386, 507, 575
StyD4I	CCNGG	4 cut(s)	323, 590, 602, 860
StyI	CCWWGG	3 cut(s)	343, 567, 709
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	2 cut(s)	782, 1046
TaqI	TCGA	8 cut(s)	42, 80, 87, 108, 630, 693, 797, 995
TasI	AATT	5 cut(s)	35, 46, 220, 598, 991
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	1 cut(s)	858
TfiI	GAWTC	2 cut(s)	77, 695
Tru1I	TTAA	6 cut(s)	158, 219, 291, 585, 1025, 1050
Tru9I	TTAA	6 cut(s)	158, 219, 291, 585, 1025, 1050
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	3 cut(s)	188, 262, 379
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	3 cut(s)	188, 262, 379
TspDTI	ATGAA	7 cut(s)	272, 364, 543, 716, 960, 962, 1125
TspRI	CASTG	1 cut(s)	265
Vha464I	CTTAAG	1 cut(s)	1024
VpaK11BI	GGWCC	2 cut(s)	17, 890
XapI	RAATTY	2 cut(s)	35, 991
XspI	CTAG	4 cut(s)	200, 386, 507, 575
ZraI	GACGTC	1 cut(s)	780
Zsp2I	ATGCAT	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.