Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000244.1

Orthogroup ID

OG0003266

Physical Location & Seq

Genomic Coordinates Forward (+)

191753 .. 193437

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000244.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atggtacaggcagtcgtatttgaatcacaccaaagaaaaaggaaagaagcctcagtttctgcaggttgggcatggcttccaagtgagcttttggaattgatactagacaaattggtacttatctctgactacatccagttcggtgcagtttgcaagcattggcaatccgccgctaaacaacataaacagcaatggatgaaattttgtcacaaacagcttcctatgctgatgcagattactagaaaccgcaacaaaagcaatgctgccttgtttagtatatcgcagggaggtatgctgaggcagttgagctatgtgccttattacaacaaaaagggagttgaattatattccacccatggttggttagcttataatgacaagttggttctgaccttcttgaacccttttaccggagatactattagccctccaccaatcatagaacctacagatgcagtgcaagacagactggattctccctctacgcgcatttatcaggttgcattatcagctgacccttgtttgaatcccaatgtttatgaggttctagtacagtataggctttatcctcaaacctatctagctcattttaattcagcagatgctacttggactcaaataggtaatacatcgttagcgttgagcgttcttgatgcactttattataaaggccagtttgttgctcttaccgtgttcgatgagaaatttccctctatctacgtcagcggcataacaactacctaccagcagtctgctctaggtacagctaggaaatatattgtggaatcgtccgcgggagacttattgttggttaggataaaaggatttgagactgatgagaagagtatacaagtttacaagttgttgcgtgctgctaggagaagacccaaatgggtagagattgagagcatcggaattgatgttttgtttttgggtggaggagaacctatttgcatctcgactttagagtttccagaatgtcatccaaattccatatacttcacggatggtgtggaatggtcgatgaagagtttgaagtcgcccttgatggcgcttgaagttttaattgagctccccgcgcatacgaaggaccttaaacaccttgatggtgacgccgtcctggatgtcaagagtcttcgtccggcaacaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

384

Amino Acids

43.37

Weight (kDa)

7.64

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12381
malus_domestica	MD05G1250900.v1.1 MD10G1231500.v1.1
prunus_persica	Prupe.6G183700_v2.0.a1 Prupe.6G184200_v2.0.a1 Prupe.6G184600_v2.0.a1 Prupe.8G064600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020191 RchiOBHm_Chr5g0020201
rosa_laevigata	RLG00000032508 RLG00000032510 RLG00000032511 RLG00000032585 RLG00000033606
rosa_multiflora	Rmu_sc0002087.1_g000011 Rmu_sc0002087.1_g000012 Rmu_ssc0000244.1_g000031
rosa_roxburghii	Rroxscaffold_1G00057970 Rroxscaffold_1G00058000 Rroxscaffold_1G00058010
rosa_rugosa	Rorug05G0057600 Rorug05G0057700 Rorug05G0057800
rosa_samantha	Rh5AG148000 Rh5AG148100 Rh5BG147600 Rh5BG147700 Rh5BG147800 Rh5CG159000 Rh5CG159100 Rh5CG274700 Rh5DG146800 Rh5DG146900 Rh5DG153600 Rh5DG252100
rosa_wichuraiana	Rw5G013090 Rw5G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	372, 666
Acc36I	ACCTGC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	847
AccII	CGCG	3 cut(s)	487, 794, 1079
AciI	CCGC	7 cut(s)	168, 171, 247, 726, 792, 794, 1077
AcsI	RAATTY	3 cut(s)	200, 704, 988
AcyI	GRCGYC	1 cut(s)	1113
AfaI	GTAC	4 cut(s)	6, 117, 552, 763
AfiI	CCNNNNNNNGG	2 cut(s)	360, 410
AgsI	TTSAA	6 cut(s)	23, 341, 400, 526, 1036, 1058
AjnI	CCWGG	1 cut(s)	1119
AluBI	AGCT	8 cut(s)	88, 217, 309, 368, 512, 584, 767, 1072
AluI	AGCT	8 cut(s)	88, 217, 309, 368, 512, 584, 767, 1072
Alw21I	GWGCWC	1 cut(s)	1074
Alw26I	GTCTC	2 cut(s)	792, 824
AlwNI	CAGNNNCTG	1 cut(s)	59
AoxI	GGCC	1 cut(s)	670
ApeKI	GCWGC	2 cut(s)	263, 872
ApoI	RAATTY	3 cut(s)	200, 704, 988
AspLEI	GCGC	3 cut(s)	489, 1054, 1081
AspS9I	GGNCC	1 cut(s)	1090
AsuHPI	GGTGA	1 cut(s)	1121
AvaII	GGWCC	1 cut(s)	1090
BanII	GRGCYC	1 cut(s)	1074
BbsI	GAAGAC	2 cut(s)	889, 1127
Bbv12I	GWGCWC	1 cut(s)	1074
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	250, 859
BccI	CCATC	3 cut(s)	1001, 1042, 1100
BceAI	ACGGC	1 cut(s)	1100
BciT130I	CCWGG	1 cut(s)	1121
BcoDI	GTCTC	2 cut(s)	792, 824
BfaI	CTAG	7 cut(s)	104, 240, 548, 581, 758, 768, 876
BfmI	CTRYAG	2 cut(s)	60, 447
BfoI	RGCGCY	1 cut(s)	1055
BfuAI	ACCTGC	1 cut(s)	53
BisI	GCNGC	4 cut(s)	171, 264, 727, 873
BlsI	GCNGC	4 cut(s)	172, 265, 728, 874
Bme1390I	CCNGG	1 cut(s)	1121
Bme18I	GGWCC	1 cut(s)	1090
BmgT120I	GGNCC	1 cut(s)	1090
BmrFI	CCNGG	1 cut(s)	1121
BmsI	GCATC	6 cut(s)	219, 442, 592, 643, 918, 963
BpiI	GAAGAC	2 cut(s)	889, 1127
Bpu10I	CCTNAGC	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	1113
BsaJI	CCNNGG	2 cut(s)	355, 792
BsaWI	WCCGGW	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	2 cut(s)	360, 410
Bse1I	ACTGG	3 cut(s)	136, 474, 673
Bse3DI	GCAATG	2 cut(s)	197, 265
BseBI	CCWGG	1 cut(s)	1121
BseDI	CCNNGG	2 cut(s)	355, 792
BseGI	GGATG	5 cut(s)	132, 201, 982, 1012, 1129
BseLI	CCNNNNNNNGG	2 cut(s)	360, 410
BseMI	GCAATG	2 cut(s)	197, 265
BseMII	CTCAG	2 cut(s)	66, 287
BseNI	ACTGG	3 cut(s)	136, 474, 673
BseRI	GAGGAG	1 cut(s)	954
BseXI	GCAGC	2 cut(s)	250, 859
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	3 cut(s)	487, 794, 1079
BshFI	GGCC	1 cut(s)	672
BsiHKAI	GWGCWC	1 cut(s)	1074
BsiSI	CCGG	2 cut(s)	411, 1142
BslI	CCNNNNNNNGG	2 cut(s)	360, 410
BsmAI	GTCTC	2 cut(s)	792, 824
BsnI	GGCC	1 cut(s)	672
Bsp1286I	GDGCHC	1 cut(s)	1074
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	7 cut(s)	168, 171, 247, 726, 792, 794, 1077
BspANI	GGCC	1 cut(s)	672
BspCNI	CTCAG	2 cut(s)	65, 288
BspFNI	CGCG	3 cut(s)	487, 794, 1079
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	53
BsrDI	GCAATG	2 cut(s)	197, 265
BsrI	ACTGG	3 cut(s)	136, 474, 673
BssECI	CCNNGG	2 cut(s)	355, 792
BssNAI	GTATAC	1 cut(s)	848
BssNI	GRCGYC	1 cut(s)	1113
BssT1I	CCWWGG	1 cut(s)	355
Bst1107I	GTATAC	1 cut(s)	848
Bst2UI	CCWGG	1 cut(s)	1121
Bst4CI	ACNGT	2 cut(s)	555, 691
Bst6I	CTCTTC	2 cut(s)	836, 1022
BstACI	GRCGYC	1 cut(s)	1113
BstC8I	GCNNGC	2 cut(s)	155, 870
BstDEI	CTNAG	2 cut(s)	52, 296
BstDSI	CCRYGG	2 cut(s)	355, 792
BstF5I	GGATG	5 cut(s)	132, 201, 982, 1012, 1129
BstFNI	CGCG	3 cut(s)	487, 794, 1079
BstH2I	RGCGCY	1 cut(s)	1055
BstHHI	GCGC	3 cut(s)	489, 1054, 1081
BstMAI	GTCTC	2 cut(s)	792, 824
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 223, 255, 509, 1078
BstNI	CCWGG	1 cut(s)	1121
BstSCI	CCNGG	1 cut(s)	1119
BstSFI	CTRYAG	2 cut(s)	60, 447
BstUI	CGCG	3 cut(s)	487, 794, 1079
BstV1I	GCAGC	2 cut(s)	250, 859
BstV2I	GAAGAC	2 cut(s)	889, 1127
BstZ17I	GTATAC	1 cut(s)	848
BsuRI	GGCC	1 cut(s)	672
BtgI	CCRYGG	2 cut(s)	355, 792
BtsCI	GGATG	5 cut(s)	132, 201, 982, 1012, 1129
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	1 cut(s)	462
BveI	ACCTGC	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	155, 870
CaiI	CAGNNNCTG	1 cut(s)	59
CfoI	GCGC	3 cut(s)	489, 1054, 1081
Cfr13I	GGNCC	1 cut(s)	1090
Cfr42I	CCGCGG	1 cut(s)	795
CseI	GACGC	1 cut(s)	1121
Csp6I	GTAC	4 cut(s)	5, 116, 551, 762
CviAII	CATG	2 cut(s)	72, 356
CviQI	GTAC	4 cut(s)	5, 116, 551, 762
DdeI	CTNAG	2 cut(s)	52, 296
Eam1104I	CTCTTC	2 cut(s)	836, 1022
EarI	CTCTTC	2 cut(s)	836, 1022
EciI	GGCGGA	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	1072
Eco130I	CCWWGG	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	1074
Eco47I	GGWCC	1 cut(s)	1090
Eco53kI	GAGCTC	1 cut(s)	1072
EcoICRI	GAGCTC	1 cut(s)	1072
EcoO109I	RGGNCCY	1 cut(s)	1090
EcoRII	CCWGG	1 cut(s)	1119
EcoT14I	CCWWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	1074
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	2 cut(s)	75, 359
FalI	AAGNNNNNCTT	2 cut(s)	1028, 1060
FatI	CATG	2 cut(s)	71, 355
FauI	CCCGC	2 cut(s)	787, 1084
FblI	GTMKAC	1 cut(s)	847
Fnu4HI	GCNGC	4 cut(s)	171, 264, 727, 873
FokI	GGATG	5 cut(s)	119, 208, 969, 1019, 1136
FriOI	GRGCYC	1 cut(s)	1074
Fsp4HI	GCNGC	4 cut(s)	171, 264, 727, 873
FspBI	CTAG	7 cut(s)	104, 240, 548, 581, 758, 768, 876
GlaI	GCGC	3 cut(s)	488, 1053, 1080
GluI	GCNGC	4 cut(s)	171, 264, 727, 873
HaeII	RGCGCY	1 cut(s)	1055
HaeIII	GGCC	1 cut(s)	672
HapII	CCGG	2 cut(s)	411, 1142
HgaI	GACGC	1 cut(s)	1121
HhaI	GCGC	3 cut(s)	489, 1054, 1081
Hin1I	GRCGYC	1 cut(s)	1113
Hin1II	CATG	2 cut(s)	75, 359
Hin6I	GCGC	3 cut(s)	487, 1052, 1079
HinP1I	GCGC	3 cut(s)	487, 1052, 1079
HinfI	GANTC	6 cut(s)	23, 473, 526, 613, 785, 1132
HpaII	CCGG	2 cut(s)	411, 1142
HphI	GGTGA	1 cut(s)	1121
Hpy166II	GTNNAC	2 cut(s)	848, 856
Hpy188I	TCNGA	3 cut(s)	127, 390, 914
Hpy188III	TCNNGA	5 cut(s)	397, 650, 958, 974, 1129
Hpy8I	GTNNAC	2 cut(s)	848, 856
HpyAV	CCTTC	2 cut(s)	403, 1081
HpyCH4III	ACNGT	2 cut(s)	555, 691
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	9 cut(s)	62, 146, 153, 232, 455, 460, 503, 656, 954
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 223, 255, 509, 1078
HpyF3I	CTNAG	2 cut(s)	52, 296
HpySE526I	ACGT	1 cut(s)	720
Hsp92I	GRCGYC	1 cut(s)	1113
Hsp92II	CATG	2 cut(s)	75, 359
HspAI	GCGC	3 cut(s)	487, 1052, 1079
KspI	CCGCGG	1 cut(s)	795
LmnI	GCTCC	1 cut(s)	1077
Lsp1109I	GCAGC	2 cut(s)	250, 859
LweI	GCATC	6 cut(s)	219, 442, 592, 643, 918, 963
MaeI	CTAG	7 cut(s)	104, 240, 548, 581, 758, 768, 876
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	2 cut(s)	206, 1109
MboII	GAAGA	4 cut(s)	853, 894, 1039, 1127
MhlI	GDGCHC	1 cut(s)	1074
MluCI	AATT	9 cut(s)	95, 110, 200, 341, 592, 704, 915, 988, 1065
MlyI	GAGTC	2 cut(s)	607, 1141
MnlI	CCTC	9 cut(s)	61, 281, 291, 438, 490, 535, 579, 721, 932
MseI	TTAA	3 cut(s)	591, 1064, 1095
MslI	CAYNNNNRTG	1 cut(s)	1104
MspA1I	CMGCKG	3 cut(s)	512, 726, 794
MspI	CCGG	2 cut(s)	411, 1142
MspR9I	CCNGG	1 cut(s)	1121
MvaI	CCWGG	1 cut(s)	1121
MvnI	CGCG	3 cut(s)	487, 794, 1079
MwoI	GCNNNNNNNGC	5 cut(s)	68, 223, 255, 509, 1078
NcoI	CCATGG	1 cut(s)	355
NlaIII	CATG	2 cut(s)	75, 359
NmuCI	GTSAC	2 cut(s)	206, 1109
PfeI	GAWTC	4 cut(s)	23, 473, 526, 785
PflFI	GACNNNGTC	1 cut(s)	1115
PfoI	TCCNGGA	1 cut(s)	1119
PkrI	GCNGC	4 cut(s)	172, 265, 728, 874
PleI	GAGTC	2 cut(s)	607, 1140
PpsI	GAGTC	2 cut(s)	607, 1140
PpuMI	RGGWCCY	1 cut(s)	1090
PsiI	TTATAA	2 cut(s)	372, 666
Psp124BI	GAGCTC	1 cut(s)	1074
Psp5II	RGGWCCY	1 cut(s)	1090
Psp6I	CCWGG	1 cut(s)	1119
PspGI	CCWGG	1 cut(s)	1119
PspPI	GGNCC	1 cut(s)	1090
PspPPI	RGGWCCY	1 cut(s)	1090
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	59
PsyI	GACNNNGTC	1 cut(s)	1115
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	4 cut(s)	6, 117, 552, 763
RsaNI	GTAC	4 cut(s)	5, 116, 551, 762
RseI	CAYNNNNRTG	1 cut(s)	1104
SacI	GAGCTC	1 cut(s)	1074
SacII	CCGCGG	1 cut(s)	795
SaqAI	TTAA	3 cut(s)	591, 1064, 1095
SatI	GCNGC	4 cut(s)	171, 264, 727, 873
Sau96I	GGNCC	1 cut(s)	1090
SchI	GAGTC	2 cut(s)	607, 1141
ScrFI	CCNGG	1 cut(s)	1121
SduI	GDGCHC	1 cut(s)	1074
SfaNI	GCATC	6 cut(s)	219, 442, 592, 643, 918, 963
SfcI	CTRYAG	2 cut(s)	60, 447
Sfr303I	CCGCGG	1 cut(s)	795
SgrBI	CCGCGG	1 cut(s)	795
SinI	GGWCC	1 cut(s)	1090
SmiMI	CAYNNNNRTG	1 cut(s)	1104
Sse9I	AATT	9 cut(s)	95, 110, 200, 341, 592, 704, 915, 988, 1065
SsiI	CCGC	7 cut(s)	168, 171, 247, 726, 792, 794, 1077
SspMI	CTAG	7 cut(s)	104, 240, 548, 581, 758, 768, 876
SstI	GAGCTC	1 cut(s)	1074
StyD4I	CCNGG	1 cut(s)	1119
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	555, 691
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	3 cut(s)	696, 959, 1022
TasI	AATT	9 cut(s)	95, 110, 200, 341, 592, 704, 915, 988, 1065
TatI	WGTACW	1 cut(s)	550
TauI	GCSGC	2 cut(s)	173, 729
TfiI	GAWTC	4 cut(s)	23, 473, 526, 785
Tru1I	TTAA	3 cut(s)	591, 1064, 1095
Tru9I	TTAA	3 cut(s)	591, 1064, 1095
TscAI	CASTG	1 cut(s)	462
TseFI	GTSAC	2 cut(s)	206, 1109
TseI	GCWGC	2 cut(s)	263, 872
Tsp45I	GTSAC	2 cut(s)	206, 1109
TspDTI	ATGAA	2 cut(s)	212, 1040
TspGWI	ACGGA	1 cut(s)	1019
TspRI	CASTG	1 cut(s)	462
Tth111I	GACNNNGTC	1 cut(s)	1115
VpaK11BI	GGWCC	1 cut(s)	1090
XapI	RAATTY	3 cut(s)	200, 704, 988
XmiI	GTMKAC	1 cut(s)	847
XspI	CTAG	7 cut(s)	104, 240, 548, 581, 758, 768, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.