Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003266

Physical Location & Seq

Genomic Coordinates Reverse (-)

14458471 .. 14459622

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30030

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGATTACCAAAAAACCAAAAACAAGGACAGTGGAAGAGGCAATATCAACCTTGGAAGGTTCAGGTTGGGCATGGCTTCCAAGGGACATTCTGGATTTGATTCTTGAAAGGTTGATACAGATCAAAGACTATATCCGGTTTGGTGTGGTTTGCAAGCATTGGCGATCAATTGCTCTACACCAAAATATGCAGTCGCGACTCGAATCATGTCACAAACTGCCTCCTCTAATGATTTTTATAAACCAATATGACAACGGTACAAGTGTGGCCTTGCATAGTGGCACACAAGACAAGACTAGCAGGTTTAAGTTGAAATTGAATGGTTTCCCTATTTACGATTTGACCAAGGATTGTGGTTCTTCCCATGGTTGGTTGGCTTATGCGGATGCCACTTTGGAGGTAACCCTCTTAAACCCTTTCACCGGATGCACAATTACCCTTCCACCAGTACGCACAACACATGGCCATTACATCAAGAAGGTTGTATTGTCTGCAGACCCTTCTTTGTGCCCTGATGACTTTGAAGCTCTGGTAATGTATATGCATTACTCTTGCACCAAACTGATCAAACTAGCCCATTTTAAGTCAGGGCAAGATGCTTGGACTCGCATAGATCATCGTAGAATGGAACTTTCTTATGCAATGTATTACAGAGGCAAGTTTCTAATTTGGAATGACCATTGTGAAATTTGTTCAGTTGATGATAGTAGCAAAGGAACGAAGGTACTCCTTGATTATAGATGGGTACTCCTTGCTTATAGATCTTTATATGTTCAGGATAGTAGAATATACCTTGTGGAATCGTCCAAGGGAGATCTATTGCTGATTATGAAGGGACCATCGTCTGAAGATCTGCACATCAACGTTTTCAAGTTGTTGAGTGATTTAAATAATGAATTCAAATGCTTAAAGATTGAGAGTATCGGATATGATGCTTTGTTTTTGGATCGTAACCAGTCTATCTGTGTCTCTGCTTTAGAATTTCCAGAGTGTCATCCCAATTCAATATACTTCGTCAATGGTACATTCAACTTGGAAAACCAAAAAATGCATTGGCGTTACCTCTCAATACCAACATTATCAGCAATATGGAGTTCACCAACTATATGCTTTGAAAATCGCCTTTACCAACAACAAATGAGGGTGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

383

Amino Acids

44.27

Weight (kDa)

8.17

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	26 - 60	7.8e-06	F-box-like
Beta-prop_KIB1-4	PF03478	97 - 340	7.2e-43	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12381
malus_domestica	MD05G1250900.v1.1 MD10G1231500.v1.1
prunus_persica	Prupe.6G183700_v2.0.a1 Prupe.6G184200_v2.0.a1 Prupe.6G184600_v2.0.a1 Prupe.8G064600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020191 RchiOBHm_Chr5g0020201
rosa_laevigata	RLG00000032508 RLG00000032510 RLG00000032511 RLG00000032585 RLG00000033606
rosa_multiflora	Rmu_sc0002087.1_g000011 Rmu_sc0002087.1_g000012 Rmu_ssc0000244.1_g000031
rosa_roxburghii	Rroxscaffold_1G00057970 Rroxscaffold_1G00058000 Rroxscaffold_1G00058010
rosa_rugosa	Rorug05G0057600 Rorug05G0057700 Rorug05G0057800
rosa_samantha	Rh5AG148000 Rh5AG148100 Rh5BG147600 Rh5BG147700 Rh5BG147800 Rh5CG159000 Rh5CG159100 Rh5CG274700 Rh5DG146800 Rh5DG146900 Rh5DG153600 Rh5DG252100
rosa_wichuraiana	Rw5G013090 Rw5G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	291
AccII	CGCG	1 cut(s)	196
AciI	CCGC	1 cut(s)	383
AclI	AACGTT	1 cut(s)	864
AclWI	GGATC	1 cut(s)	954
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	3 cut(s)	687, 896, 980
AcuI	CTGAAG	1 cut(s)	867
AfaI	GTAC	5 cut(s)	259, 450, 726, 747, 1024
AfiI	CCNNNNNNNGG	2 cut(s)	369, 422
AgsI	TTSAA	9 cut(s)	107, 313, 319, 524, 871, 901, 1005, 1030, 1115
AluBI	AGCT	1 cut(s)	527
AluI	AGCT	1 cut(s)	527
Alw26I	GTCTC	1 cut(s)	973
AlwI	GGATC	1 cut(s)	954
AoxI	GGCC	2 cut(s)	267, 463
ApoI	RAATTY	3 cut(s)	687, 896, 980
Asp700I	GAANNNNTTC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	836
AsuHPI	GGTGA	2 cut(s)	412, 1089
AvaII	GGWCC	1 cut(s)	836
BaeGI	GKGCMC	1 cut(s)	512
BaeI	ACNNNNGTAYC	2 cut(s)	249, 282
BalI	TGGCCA	1 cut(s)	465
BccI	CCATC	2 cut(s)	735, 847
BclI	TGATCA	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	973
BfaI	CTAG	2 cut(s)	297, 572
BfmI	CTRYAG	1 cut(s)	492
BfuAI	ACCTGC	1 cut(s)	291
BglII	AGATCT	3 cut(s)	761, 814, 850
Bme18I	GGWCC	1 cut(s)	836
BmgT120I	GGNCC	1 cut(s)	836
BmiI	GGNNCC	1 cut(s)	837
BmsI	GCATC	4 cut(s)	376, 416, 586, 922
BoxI	GACNNNNGTC	1 cut(s)	841
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	5 cut(s)	51, 80, 345, 364, 807
BsaWI	WCCGGW	2 cut(s)	135, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 422
Bse1I	ACTGG	2 cut(s)	446, 955
Bse3DI	GCAATG	1 cut(s)	648
Bse8I	GATNNNNATC	1 cut(s)	119
BseDI	CCNNGG	5 cut(s)	51, 80, 345, 364, 807
BseGI	GGATG	3 cut(s)	391, 431, 994
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	2 cut(s)	369, 422
BseMI	GCAATG	1 cut(s)	648
BseNI	ACTGG	2 cut(s)	446, 955
BseRI	GAGGAG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	512
BsgI	GTGCAG	1 cut(s)	839
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	269, 465
BsiSI	CCGG	2 cut(s)	136, 423
BslFI	GGGAC	2 cut(s)	98, 849
BslI	CCNNNNNNNGG	2 cut(s)	369, 422
BsmAI	GTCTC	1 cut(s)	973
BsmFI	GGGAC	2 cut(s)	98, 849
BsnI	GGCC	2 cut(s)	269, 465
Bsp1286I	GDGCHC	1 cut(s)	512
Bsp143I	GATC	8 cut(s)	120, 164, 564, 613, 761, 814, 850, 946
Bsp19I	CCATGG	1 cut(s)	364
Bsp68I	TCGCGA	1 cut(s)	196
BspACI	CCGC	1 cut(s)	383
BspANI	GGCC	2 cut(s)	269, 465
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	837
BspMAI	CTGCAG	1 cut(s)	496
BspMI	ACCTGC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	954
BsrDI	GCAATG	1 cut(s)	648
BsrI	ACTGG	2 cut(s)	446, 955
BssECI	CCNNGG	5 cut(s)	51, 80, 345, 364, 807
BssMI	GATC	8 cut(s)	120, 164, 564, 613, 761, 814, 850, 946
BssT1I	CCWWGG	5 cut(s)	51, 80, 345, 364, 807
Bst4CI	ACNGT	2 cut(s)	31, 257
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	364
BstEII	GGTNACC	1 cut(s)	400
BstF5I	GGATG	3 cut(s)	391, 431, 994
BstFNI	CGCG	1 cut(s)	196
BstKTI	GATC	8 cut(s)	123, 167, 567, 616, 764, 817, 853, 949
BstMAI	GTCTC	1 cut(s)	973
BstMBI	GATC	8 cut(s)	120, 164, 564, 613, 761, 814, 850, 946
BstPAI	GACNNNNGTC	1 cut(s)	841
BstPI	GGTNACC	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	512
BstUI	CGCG	1 cut(s)	196
BstX2I	RGATCY	3 cut(s)	761, 814, 850
BstYI	RGATCY	3 cut(s)	761, 814, 850
BsuRI	GGCC	2 cut(s)	269, 465
BtgI	CCRYGG	1 cut(s)	364
BtsCI	GGATG	3 cut(s)	391, 431, 994
BtsIMutI	CAGTG	1 cut(s)	36
BtuMI	TCGCGA	1 cut(s)	196
BveI	ACCTGC	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	836
Csp6I	GTAC	5 cut(s)	258, 449, 725, 746, 1023
CspCI	CAANNNNNGTGG	4 cut(s)	12, 47, 334, 369
CviAII	CATG	4 cut(s)	72, 207, 365, 461
CviJI	RGCY	6 cut(s)	76, 269, 377, 465, 527, 575
CviKI_1	RGCY	6 cut(s)	76, 269, 377, 465, 527, 575
CviQI	GTAC	5 cut(s)	258, 449, 725, 746, 1023
DpnI	GATC	8 cut(s)	122, 166, 566, 615, 763, 816, 852, 948
DpnII	GATC	8 cut(s)	120, 164, 564, 613, 761, 814, 850, 946
DraI	TTTAAA	1 cut(s)	888
EaeI	YGGCCR	1 cut(s)	463
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	5 cut(s)	51, 80, 345, 364, 807
Eco47I	GGWCC	1 cut(s)	836
Eco57I	CTGAAG	1 cut(s)	867
Eco91I	GGTNACC	1 cut(s)	400
EcoO65I	GGTNACC	1 cut(s)	400
EcoRI	GAATTC	1 cut(s)	896
EcoT14I	CCWWGG	5 cut(s)	51, 80, 345, 364, 807
EcoT22I	ATGCAT	2 cut(s)	546, 1053
ErhI	CCWWGG	5 cut(s)	51, 80, 345, 364, 807
FaeI	CATG	4 cut(s)	75, 210, 368, 464
FaqI	GGGAC	2 cut(s)	98, 849
FatI	CATG	4 cut(s)	71, 206, 364, 460
FbaI	TGATCA	1 cut(s)	564
FokI	GGATG	3 cut(s)	398, 438, 981
FspBI	CTAG	2 cut(s)	297, 572
HaeIII	GGCC	2 cut(s)	269, 465
HapII	CCGG	2 cut(s)	136, 423
Hin1II	CATG	4 cut(s)	75, 210, 368, 464
HinfI	GANTC	5 cut(s)	100, 198, 203, 604, 800
HpaII	CCGG	2 cut(s)	136, 423
HphI	GGTGA	2 cut(s)	412, 1089
Hpy166II	GTNNAC	1 cut(s)	1097
Hpy188I	TCNGA	2 cut(s)	847, 926
Hpy188III	TCNNGA	6 cut(s)	92, 104, 195, 475, 776, 986
Hpy8I	GTNNAC	1 cut(s)	1097
HpyAV	CCTTC	6 cut(s)	50, 449, 472, 510, 715, 826
HpyCH4III	ACNGT	2 cut(s)	31, 257
HpyCH4IV	ACGT	1 cut(s)	864
HpySE526I	ACGT	1 cut(s)	864
Hsp92II	CATG	4 cut(s)	75, 210, 368, 464
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	8 cut(s)	120, 164, 564, 613, 761, 814, 850, 946
LweI	GCATC	4 cut(s)	376, 416, 586, 922
MaeI	CTAG	2 cut(s)	297, 572
MaeII	ACGT	1 cut(s)	864
MaeIII	GTNAC	4 cut(s)	209, 400, 950, 1058
MalI	GATC	8 cut(s)	122, 166, 566, 615, 763, 816, 852, 948
MboI	GATC	8 cut(s)	120, 164, 564, 613, 761, 814, 850, 946
MboII	GAAGA	3 cut(s)	47, 351, 860
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	3 cut(s)	761, 814, 850
MhlI	GDGCHC	1 cut(s)	512
MlsI	TGGCCA	1 cut(s)	465
MluCI	AATT	8 cut(s)	168, 314, 432, 666, 687, 896, 980, 1000
MluNI	TGGCCA	1 cut(s)	465
MlyI	GAGTC	2 cut(s)	192, 598
MnlI	CCTC	8 cut(s)	31, 231, 234, 391, 416, 647, 1073, 1134
Mox20I	TGGCCA	1 cut(s)	465
Mph1103I	ATGCAT	2 cut(s)	546, 1053
MroXI	GAANNNNTTC	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	465
MseI	TTAA	5 cut(s)	306, 410, 582, 887, 908
Msp20I	TGGCCA	1 cut(s)	465
MspI	CCGG	2 cut(s)	136, 423
MunI	CAATTG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	364
NdeII	GATC	8 cut(s)	120, 164, 564, 613, 761, 814, 850, 946
NlaIII	CATG	4 cut(s)	75, 210, 368, 464
NlaIV	GGNNCC	1 cut(s)	837
NmuCI	GTSAC	1 cut(s)	209
NruI	TCGCGA	1 cut(s)	196
NsiI	ATGCAT	2 cut(s)	546, 1053
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	3 cut(s)	100, 203, 800
PleI	GAGTC	2 cut(s)	192, 598
PpsI	GAGTC	2 cut(s)	192, 598
PshAI	GACNNNNGTC	1 cut(s)	841
PsiI	TTATAA	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	864
PspEI	GGTNACC	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	837
PspPI	GGNCC	1 cut(s)	836
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	3 cut(s)	761, 814, 850
RruI	TCGCGA	1 cut(s)	196
RsaI	GTAC	5 cut(s)	259, 450, 726, 747, 1024
RsaNI	GTAC	5 cut(s)	258, 449, 725, 746, 1023
SaqAI	TTAA	5 cut(s)	306, 410, 582, 887, 908
Sau3AI	GATC	8 cut(s)	120, 164, 564, 613, 761, 814, 850, 946
Sau96I	GGNCC	1 cut(s)	836
SchI	GAGTC	2 cut(s)	192, 598
SduI	GDGCHC	1 cut(s)	512
SfaNI	GCATC	4 cut(s)	376, 416, 586, 922
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	836
SmiI	ATTTAAAT	1 cut(s)	888
Sse9I	AATT	8 cut(s)	168, 314, 432, 666, 687, 896, 980, 1000
SsiI	CCGC	1 cut(s)	383
SspMI	CTAG	2 cut(s)	297, 572
StyI	CCWWGG	5 cut(s)	51, 80, 345, 364, 807
SwaI	ATTTAAAT	1 cut(s)	888
TaaI	ACNGT	2 cut(s)	31, 257
TaiI	ACGT	1 cut(s)	867
TaqI	TCGA	1 cut(s)	201
TasI	AATT	8 cut(s)	168, 314, 432, 666, 687, 896, 980, 1000
TfiI	GAWTC	3 cut(s)	100, 203, 800
Tru1I	TTAA	5 cut(s)	306, 410, 582, 887, 908
Tru9I	TTAA	5 cut(s)	306, 410, 582, 887, 908
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	845, 909
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	836
XapI	RAATTY	3 cut(s)	687, 896, 980
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	2 cut(s)	297, 572
Zsp2I	ATGCAT	2 cut(s)	546, 1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.