RLG00000032511

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003266
Physical Location & Seq
Reverse (-)
15985219 .. 15986357
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032511

Sequence Viewer

Length: 1065 bp
ATGGCAGAGCAGGAAATCATATCAACCATAGCTTCATCTCCTGACTGGGCTTGGCTCCCAAGCAACCTTCTGGATTCTATACTATTAAAAATGATACCAATCACTGACTACATCCGGTTCGGTGCAGTTTGCAAGCACTGGCAATCTGCCGCATCGCATCAGAAAGAGCACGGCATGAAATCATGTCACAAGCAGCTTCCTATGCTCATGAAGATTACTAGAACCGGCAAAAACGGCAAAAACGAAAGCCGGGTTGCCGCCTTGTTTACTGTGGCACAAGGAGGTCAGCTGAGGCGGTTTAACTATGAGCCTGATTACATTAAGAACAAGCCTTATTATATGATGAGGGCATACCATTACTCTTCCACCACTCATAGAATACACAGTGCAAGGGCGGTTTTTATTGATTGGGTTGAATTGTCGGCTGACCCATGTTTGTGTCCTAATGATTATGAAGTTCTAGTACTATACAATACTCTATACTATGAGTTTTCGGTAACCAGTCTAGCATATTTTAGATCAGCGGATGATACTTGGACTCAAATAGGTGATGAAAGTTTCGCCAGCAAAGTTGGGGATGCAGTTTATTATAAAGGCCAGTTTGTTGCTCTTACCCATTGGGAATTGCCCGCCAACTTTACCATTAACTTTAGAACTACCAACCCATTCGAATCTCTTGATCGATCTCCAGAGTATATGATCTCGGAATATATTCTCGAATCTTCCGGGGGAGATTTATTGTTGGTTAAGAGGATTCAAGCATCTATGACGTCTAAGAAGTGCATAGAAGTTTTCAAATTGTTGCATGCAGATGGGGATATGCCTAGATGGGTAGCGATTAAGAGTATTGGAAGTGATGTTTTCTTTTTGAGTACCCGTTCATCAGCTATGAGTGTATCCGCATTAGACTTTCCACAGTGTGTTCTGAATTCCATATACTTCACAGGCGGTGTCTTCAATTTGGACAAAACGGAGGACTGGATTGTAGAGCATAACCACGCAGAAACTTTAGAGCATCAGCGATTTCATAAGACACTATTATGGGTTTCTCCCACTATAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

355

Amino Acids

40.59

Weight (kDa)

6.5

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 123 - 325 6.2e-26 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 591
AatII GACGTC 1 cut(s) 773
AciI CCGC 8 cut(s) 150, 258, 295, 395, 524, 630, 900, 948
AcsI RAATTY 1 cut(s) 928
AcyI GRCGYC 1 cut(s) 770
AdeI CACNNNGTG 1 cut(s) 920
AfaI GTAC 2 cut(s) 465, 874
AfiI CCNNNNNNNGG 1 cut(s) 1059
AgsI TTSAA 4 cut(s) 416, 758, 796, 958
AluBI AGCT 4 cut(s) 32, 196, 289, 887
AluI AGCT 4 cut(s) 32, 196, 289, 887
Alw21I GWGCWC 1 cut(s) 171
AoxI GGCC 1 cut(s) 595
ApeKI GCWGC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 928
Asp700I GAANNNNTTC 1 cut(s) 711
AsuC2I CCSGG 2 cut(s) 251, 727
AsuHPI GGTGA 1 cut(s) 560
AsuII TTCGAA 1 cut(s) 669
BarI GAAGNNNNNNTAC 2 cut(s) 447, 479
BbsI GAAGAC 1 cut(s) 946
Bbv12I GWGCWC 1 cut(s) 171
BbvCI CCTCAGC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 205
BccI CCATC 2 cut(s) 806, 822
BceAI ACGGC 2 cut(s) 187, 250
BciVI GTATCC 1 cut(s) 907
BcnI CCSGG 2 cut(s) 251, 727
BfaI CTAG 4 cut(s) 219, 461, 506, 825
BfuI GTATCC 1 cut(s) 907
BisI GCNGC 3 cut(s) 150, 194, 258
BlsI GCNGC 3 cut(s) 151, 195, 259
BmcAI AGTACT 1 cut(s) 465
Bme1390I CCNGG 2 cut(s) 251, 727
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 251, 727
BmrI ACTGGG 1 cut(s) 55
BmsI GCATC 5 cut(s) 161, 166, 568, 770, 1024
BmuI ACTGGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 946
BpmI CTGGAG 1 cut(s) 672
Bpu10I CCTNAGC 1 cut(s) 290
Bpu14I TTCGAA 1 cut(s) 669
BpuMI CCSGG 2 cut(s) 251, 727
Bsa29I ATCGAT 1 cut(s) 682
BsaBI GATNNNNATC 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 770
BsaJI CCNNGG 1 cut(s) 726
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 1059
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 5 cut(s) 50, 143, 501, 598, 983
Bse8I GATNNNNATC 1 cut(s) 98
BseCI ATCGAT 1 cut(s) 682
BseDI CCNNGG 1 cut(s) 726
BseGI GGATG 3 cut(s) 111, 532, 583
BseJI GATNNNNATC 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 1059
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 5 cut(s) 50, 143, 501, 598, 983
BseXI GCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 144
BshFI GGCC 1 cut(s) 597
BshVI ATCGAT 1 cut(s) 682
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 4 cut(s) 115, 225, 250, 726
BslI CCNNNNNNNGG 1 cut(s) 1059
BsnI GGCC 1 cut(s) 597
Bsp119I TTCGAA 1 cut(s) 669
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 4 cut(s) 518, 679, 683, 699
BspACI CCGC 8 cut(s) 150, 258, 295, 395, 524, 630, 900, 948
BspANI GGCC 1 cut(s) 597
BspCNI CTCAG 1 cut(s) 282
BspDI ATCGAT 1 cut(s) 682
BspHI TCATGA 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 56
BspT104I TTCGAA 1 cut(s) 669
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 5 cut(s) 50, 143, 501, 598, 983
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 726
BssMI GATC 4 cut(s) 518, 679, 683, 699
BssNI GRCGYC 1 cut(s) 770
Bst4CI ACNGT 3 cut(s) 271, 386, 918
Bst6I CTCTTC 1 cut(s) 367
BstACI GRCGYC 1 cut(s) 770
BstBI TTCGAA 1 cut(s) 669
BstC8I GCNNGC 4 cut(s) 134, 565, 630, 807
BstDEI CTNAG 2 cut(s) 290, 774
BstEII GGTNACC 1 cut(s) 496
BstF5I GGATG 3 cut(s) 111, 532, 583
BstKTI GATC 4 cut(s) 521, 682, 686, 702
BstMBI GATC 4 cut(s) 518, 679, 683, 699
BstMWI GCNNNNNNNGC 2 cut(s) 202, 234
BstNSI RCATGY 1 cut(s) 809
BstPI GGTNACC 1 cut(s) 496
BstSCI CCNGG 2 cut(s) 249, 725
BstV1I GCAGC 1 cut(s) 205
BstV2I GAAGAC 1 cut(s) 946
Bsu15I ATCGAT 1 cut(s) 682
BsuI GTATCC 1 cut(s) 907
BsuRI GGCC 1 cut(s) 597
BsuTUI ATCGAT 1 cut(s) 682
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 3 cut(s) 111, 532, 583
BtsIMutI CAGTG 4 cut(s) 102, 136, 391, 923
Cac8I GCNNGC 4 cut(s) 134, 565, 630, 807
CciI TCATGA 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 224
ClaI ATCGAT 1 cut(s) 682
Csp6I GTAC 2 cut(s) 464, 873
CviAII CATG 5 cut(s) 175, 183, 208, 432, 806
CviQI GTAC 2 cut(s) 464, 873
DdeI CTNAG 2 cut(s) 290, 774
DpnI GATC 4 cut(s) 520, 681, 685, 701
DpnII GATC 4 cut(s) 518, 679, 683, 699
DraIII CACNNNGTG 1 cut(s) 920
Eam1104I CTCTTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 367
Eco91I GGTNACC 1 cut(s) 496
EcoO65I GGTNACC 1 cut(s) 496
EcoRI GAATTC 1 cut(s) 928
FaeI CATG 5 cut(s) 178, 186, 211, 435, 809
FatI CATG 5 cut(s) 174, 182, 207, 431, 805
FauI CCCGC 1 cut(s) 637
Fnu4HI GCNGC 3 cut(s) 150, 194, 258
FokI GGATG 3 cut(s) 98, 539, 590
Fsp4HI GCNGC 3 cut(s) 150, 194, 258
FspBI CTAG 4 cut(s) 219, 461, 506, 825
GluI GCNGC 3 cut(s) 150, 194, 258
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 1 cut(s) 597
HapII CCGG 4 cut(s) 115, 225, 250, 726
Hin1I GRCGYC 1 cut(s) 770
Hin1II CATG 5 cut(s) 178, 186, 211, 435, 809
HinfI GANTC 5 cut(s) 74, 538, 671, 719, 754
HpaII CCGG 4 cut(s) 115, 225, 250, 726
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 3 cut(s) 162, 706, 927
Hpy188III TCNNGA 6 cut(s) 41, 71, 208, 677, 689, 716
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 3 cut(s) 271, 386, 918
HpyCH4IV ACGT 1 cut(s) 770
HpyCH4V TGCA 7 cut(s) 125, 132, 389, 581, 783, 805, 809
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 234
HpyF3I CTNAG 2 cut(s) 290, 774
HpySE526I ACGT 1 cut(s) 770
Hsp92I GRCGYC 1 cut(s) 770
Hsp92II CATG 5 cut(s) 178, 186, 211, 435, 809
Kzo9I GATC 4 cut(s) 518, 679, 683, 699
LmnI GCTCC 1 cut(s) 60
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 5 cut(s) 161, 166, 568, 770, 1024
MaeI CTAG 4 cut(s) 219, 461, 506, 825
MaeII ACGT 1 cut(s) 770
MaeIII GTNAC 2 cut(s) 185, 496
MalI GATC 4 cut(s) 520, 681, 685, 701
MboI GATC 4 cut(s) 518, 679, 683, 699
MboII GAAGA 4 cut(s) 223, 354, 714, 946
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 5 cut(s) 416, 623, 797, 928, 958
MlyI GAGTC 1 cut(s) 532
MnlI CCTC 5 cut(s) 275, 285, 339, 744, 967
MroXI GAANNNNTTC 1 cut(s) 711
MseI TTAA 6 cut(s) 86, 300, 321, 645, 747, 840
MslI CAYNNNNRTG 3 cut(s) 436, 810, 1039
MspA1I CMGCKG 2 cut(s) 289, 524
MspI CCGG 4 cut(s) 115, 225, 250, 726
MspR9I CCNGG 2 cut(s) 251, 727
MwoI GCNNNNNNNGC 2 cut(s) 202, 234
NciI CCSGG 2 cut(s) 251, 727
NdeII GATC 4 cut(s) 518, 679, 683, 699
NlaIII CATG 5 cut(s) 178, 186, 211, 435, 809
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 185
NspI RCATGY 1 cut(s) 809
NspV TTCGAA 1 cut(s) 669
PaeI GCATGC 1 cut(s) 809
PagI TCATGA 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 711
PfeI GAWTC 4 cut(s) 74, 671, 719, 754
PkrI GCNGC 3 cut(s) 151, 195, 259
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
PsiI TTATAA 1 cut(s) 591
PspEI GGTNACC 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 289
RsaI GTAC 2 cut(s) 465, 874
RsaNI GTAC 2 cut(s) 464, 873
RseI CAYNNNNRTG 3 cut(s) 436, 810, 1039
SaqAI TTAA 6 cut(s) 86, 300, 321, 645, 747, 840
SatI GCNGC 3 cut(s) 150, 194, 258
Sau3AI GATC 4 cut(s) 518, 679, 683, 699
ScaI AGTACT 1 cut(s) 465
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 2 cut(s) 251, 727
SduI GDGCHC 1 cut(s) 171
SetI ASST 9 cut(s) 34, 69, 198, 286, 291, 550, 773, 889, 1064
SfaNI GCATC 5 cut(s) 161, 166, 568, 770, 1024
SfuI TTCGAA 1 cut(s) 669
SmiMI CAYNNNNRTG 3 cut(s) 436, 810, 1039
SphI GCATGC 1 cut(s) 809
Sse9I AATT 5 cut(s) 416, 623, 797, 928, 958
SsiI CCGC 8 cut(s) 150, 258, 295, 395, 524, 630, 900, 948
SspMI CTAG 4 cut(s) 219, 461, 506, 825
StyD4I CCNGG 2 cut(s) 249, 725
TaaI ACNGT 3 cut(s) 271, 386, 918
TaiI ACGT 1 cut(s) 773
TaqI TCGA 3 cut(s) 669, 682, 717
TasI AATT 5 cut(s) 416, 623, 797, 928, 958
TatI WGTACW 1 cut(s) 463
TauI GCSGC 2 cut(s) 152, 260
TfiI GAWTC 4 cut(s) 74, 671, 719, 754
Tru1I TTAA 6 cut(s) 86, 300, 321, 645, 747, 840
Tru9I TTAA 6 cut(s) 86, 300, 321, 645, 747, 840
TscAI CASTG 4 cut(s) 109, 143, 391, 923
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 7 cut(s) 24, 191, 224, 468, 567, 870, 1016
TspGWI ACGGA 1 cut(s) 986
TspRI CASTG 4 cut(s) 109, 143, 391, 923
XapI RAATTY 1 cut(s) 928
XceI RCATGY 1 cut(s) 809
XmnI GAANNNNTTC 1 cut(s) 711
XspI CTAG 4 cut(s) 219, 461, 506, 825
ZraI GACGTC 1 cut(s) 771
ZrmI AGTACT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.