Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003266

Physical Location & Seq

Genomic Coordinates Reverse (-)

14974212 .. 14976180

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG146800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGATTACCAAAAAACCAAAAACAAGGACAGTGGAAGAGGCAATATCAACCTTGGAAGGTTCAGGTTGGGCATGGCTTCCAAGGGACATTCTGGATTTGATTCTTGAAAGGTTGATACAGATCAAAGACTATATCCGGTTTGGTGTGGTTTGCAAGCATTGGCGATCAATTGCTCTACACCAAAATATGCAGCCGCGACTCGAATCATGTCACAAACTGCCTCCTCTAATGATTTTTATAAACCAACATGACAACGGTACAAGAAGTGTGGCCTTGCATAGTGGCACACAAGACAAGACTAGCAGGTTTAAGTTGAAATTGAATGGTTTCCCTATTTACGATTTGACCAAGGATTGTGGTTCTTCCCATGGTTGGTTGGCTTATGCGGATGCCAATTTGGAGGTAACCCTCTTAAACCCTTTCACCGGATGCACAATTACCCTTCCACCAGTACGCACAACACATGGCCATTACATCAAGAAGGTTGTATTGTCTGCAGACCCTTCTTTGTGCCCTGATGACTTTGAAGCTCTGGTAATGTATATGCATTACTCTTGCACCAAACTGATCAAACTAGCTGTAGATCCTAGAAGGAGCCTAGAGGGGGGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

204

Amino Acids

23.13

Weight (kDa)

8.71

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	26 - 60	3.2e-06	F-box-like
Beta-prop_KIB1-4	PF03478	98 - 186	2.4e-15	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12381
malus_domestica	MD05G1250900.v1.1 MD10G1231500.v1.1
prunus_persica	Prupe.6G183700_v2.0.a1 Prupe.6G184200_v2.0.a1 Prupe.6G184600_v2.0.a1 Prupe.8G064600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020191 RchiOBHm_Chr5g0020201
rosa_laevigata	RLG00000032508 RLG00000032510 RLG00000032511 RLG00000032585 RLG00000033606
rosa_multiflora	Rmu_sc0002087.1_g000011 Rmu_sc0002087.1_g000012 Rmu_ssc0000244.1_g000031
rosa_roxburghii	Rroxscaffold_1G00057970 Rroxscaffold_1G00058000 Rroxscaffold_1G00058010
rosa_rugosa	Rorug05G0057600 Rorug05G0057700 Rorug05G0057800
rosa_samantha	Rh5AG148000 Rh5AG148100 Rh5BG147600 Rh5BG147700 Rh5BG147800 Rh5CG159000 Rh5CG159100 Rh5CG274700 Rh5DG146800 Rh5DG146900 Rh5DG153600 Rh5DG252100
rosa_wichuraiana	Rw5G013090 Rw5G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	294
AccII	CGCG	1 cut(s)	196
AciI	CCGC	2 cut(s)	194, 386
AclWI	GGATC	1 cut(s)	578
AcoI	YGGCCR	1 cut(s)	466
AfaI	GTAC	2 cut(s)	259, 453
AfiI	CCNNNNNNNGG	3 cut(s)	372, 425, 604
AgsI	TTSAA	4 cut(s)	107, 316, 322, 527
AluBI	AGCT	2 cut(s)	530, 578
AluI	AGCT	2 cut(s)	530, 578
AlwI	GGATC	1 cut(s)	578
AoxI	GGCC	2 cut(s)	270, 466
ApeKI	GCWGC	1 cut(s)	190
Asp700I	GAANNNNTTC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	415
BaeGI	GKGCMC	1 cut(s)	515
BalI	TGGCCA	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	202
BclI	TGATCA	1 cut(s)	567
BfaI	CTAG	4 cut(s)	300, 575, 588, 599
BfmI	CTRYAG	2 cut(s)	495, 579
BfuAI	ACCTGC	1 cut(s)	294
BisI	GCNGC	2 cut(s)	191, 194
BlsI	GCNGC	2 cut(s)	192, 195
BmiI	GGNNCC	1 cut(s)	596
BmsI	GCATC	2 cut(s)	379, 419
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	4 cut(s)	51, 80, 348, 367
BsaWI	WCCGGW	2 cut(s)	135, 425
Bsc4I	CCNNNNNNNGG	3 cut(s)	372, 425, 604
Bse1I	ACTGG	1 cut(s)	449
Bse8I	GATNNNNATC	1 cut(s)	119
BseDI	CCNNGG	4 cut(s)	51, 80, 348, 367
BseGI	GGATG	2 cut(s)	394, 434
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	3 cut(s)	372, 425, 604
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	515
BseXI	GCAGC	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	272, 468
BsiSI	CCGG	2 cut(s)	136, 426
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	3 cut(s)	372, 425, 604
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	272, 468
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp143I	GATC	4 cut(s)	120, 164, 567, 583
Bsp19I	CCATGG	1 cut(s)	367
BspACI	CCGC	2 cut(s)	194, 386
BspANI	GGCC	2 cut(s)	272, 468
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	596
BspMAI	CTGCAG	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	294
BspPI	GGATC	1 cut(s)	578
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	4 cut(s)	51, 80, 348, 367
BssMI	GATC	4 cut(s)	120, 164, 567, 583
BssT1I	CCWWGG	4 cut(s)	51, 80, 348, 367
Bst4CI	ACNGT	2 cut(s)	31, 257
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	367
BstEII	GGTNACC	1 cut(s)	403
BstF5I	GGATG	2 cut(s)	394, 434
BstFNI	CGCG	1 cut(s)	196
BstKTI	GATC	4 cut(s)	123, 167, 570, 586
BstMBI	GATC	4 cut(s)	120, 164, 567, 583
BstPI	GGTNACC	1 cut(s)	403
BstSFI	CTRYAG	2 cut(s)	495, 579
BstSLI	GKGCMC	1 cut(s)	515
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BsuRI	GGCC	2 cut(s)	272, 468
BtgI	CCRYGG	1 cut(s)	367
BtsCI	GGATG	2 cut(s)	394, 434
BtsIMutI	CAGTG	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	258, 452
CspCI	CAANNNNNGTGG	6 cut(s)	12, 47, 249, 284, 337, 372
CviAII	CATG	5 cut(s)	72, 207, 248, 368, 464
CviJI	RGCY	8 cut(s)	76, 193, 272, 380, 468, 530, 578, 597
CviKI_1	RGCY	8 cut(s)	76, 193, 272, 380, 468, 530, 578, 597
CviQI	GTAC	2 cut(s)	258, 452
DpnI	GATC	4 cut(s)	122, 166, 569, 585
DpnII	GATC	4 cut(s)	120, 164, 567, 583
EaeI	YGGCCR	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	4 cut(s)	51, 80, 348, 367
Eco91I	GGTNACC	1 cut(s)	403
EcoO65I	GGTNACC	1 cut(s)	403
EcoT14I	CCWWGG	4 cut(s)	51, 80, 348, 367
EcoT22I	ATGCAT	1 cut(s)	549
ErhI	CCWWGG	4 cut(s)	51, 80, 348, 367
FaeI	CATG	5 cut(s)	75, 210, 251, 371, 467
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	5 cut(s)	71, 206, 247, 367, 463
FbaI	TGATCA	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	191, 194
FokI	GGATG	2 cut(s)	401, 441
Fsp4HI	GCNGC	2 cut(s)	191, 194
FspBI	CTAG	4 cut(s)	300, 575, 588, 599
GluI	GCNGC	2 cut(s)	191, 194
HaeIII	GGCC	2 cut(s)	272, 468
HapII	CCGG	2 cut(s)	136, 426
Hin1II	CATG	5 cut(s)	75, 210, 251, 371, 467
HinfI	GANTC	3 cut(s)	100, 198, 203
HpaII	CCGG	2 cut(s)	136, 426
HphI	GGTGA	1 cut(s)	415
Hpy188III	TCNNGA	3 cut(s)	92, 104, 478
HpyAV	CCTTC	5 cut(s)	50, 452, 475, 513, 585
HpyCH4III	ACNGT	2 cut(s)	31, 257
HpyCH4V	TGCA	7 cut(s)	153, 190, 277, 432, 497, 547, 558
Hsp92II	CATG	5 cut(s)	75, 210, 251, 371, 467
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	4 cut(s)	120, 164, 567, 583
LmnI	GCTCC	1 cut(s)	594
LpnPI	CCDG	8 cut(s)	48, 77, 149, 289, 439, 462, 518, 528
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	2 cut(s)	379, 419
MaeI	CTAG	4 cut(s)	300, 575, 588, 599
MaeIII	GTNAC	2 cut(s)	209, 403
MalI	GATC	4 cut(s)	122, 166, 569, 585
MboI	GATC	4 cut(s)	120, 164, 567, 583
MboII	GAAGA	2 cut(s)	47, 354
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	515
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	4 cut(s)	168, 317, 394, 435
MluNI	TGGCCA	1 cut(s)	468
MlyI	GAGTC	1 cut(s)	192
MnlI	CCTC	6 cut(s)	31, 231, 234, 394, 419, 595
Mox20I	TGGCCA	1 cut(s)	468
Mph1103I	ATGCAT	1 cut(s)	549
MroXI	GAANNNNTTC	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	468
MseI	TTAA	2 cut(s)	309, 413
Msp20I	TGGCCA	1 cut(s)	468
MspI	CCGG	2 cut(s)	136, 426
MunI	CAATTG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	367
NdeII	GATC	4 cut(s)	120, 164, 567, 583
NlaIII	CATG	5 cut(s)	75, 210, 251, 371, 467
NlaIV	GGNNCC	1 cut(s)	596
NmuCI	GTSAC	1 cut(s)	209
NsiI	ATGCAT	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	2 cut(s)	100, 203
PkrI	GCNGC	2 cut(s)	192, 195
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PsiI	TTATAA	1 cut(s)	239
PspEI	GGTNACC	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	583
RsaI	GTAC	2 cut(s)	259, 453
RsaNI	GTAC	2 cut(s)	258, 452
SaqAI	TTAA	2 cut(s)	309, 413
SatI	GCNGC	2 cut(s)	191, 194
Sau3AI	GATC	4 cut(s)	120, 164, 567, 583
SchI	GAGTC	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	515
SetI	ASST	9 cut(s)	53, 61, 67, 113, 308, 405, 486, 532, 580
SfaNI	GCATC	2 cut(s)	379, 419
SfcI	CTRYAG	2 cut(s)	495, 579
Sse9I	AATT	4 cut(s)	168, 317, 394, 435
SsiI	CCGC	2 cut(s)	194, 386
SspMI	CTAG	4 cut(s)	300, 575, 588, 599
StyI	CCWWGG	4 cut(s)	51, 80, 348, 367
TaaI	ACNGT	2 cut(s)	31, 257
TaqI	TCGA	1 cut(s)	201
TasI	AATT	4 cut(s)	168, 317, 394, 435
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	2 cut(s)	100, 203
Tru1I	TTAA	2 cut(s)	309, 413
Tru9I	TTAA	2 cut(s)	309, 413
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	1 cut(s)	190
Tsp45I	GTSAC	1 cut(s)	209
TspRI	CASTG	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	4 cut(s)	300, 575, 588, 599
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.