Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002087.1

Orthogroup ID

OG0003266

Physical Location & Seq

Genomic Coordinates Forward (+)

55607 .. 56761

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002087.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atgattaccaaaaaaccaaaaacaaggacagtggaagaggcaatatcaaccttggaaggttcaggttgggcatggcttccaagggacattctggatttgattcttgaaaggttgatacagatcaaagactatatccggtttggtgtggtttgcaagcattggcgatcaattgctctacaccaaaatatgcagccgcgactcgaatcatgtcacaaactgcctcctctaatgatttttataaaccaacatgacaacggtacaagaagtgtggccttgcatagtggcacacaagacaagactagcaggtttaagttgaaattgaatggtttccctatttacgatttgaccaaggattgtggttcttcccatggttggttggcttatgcggatgccaatttggaggtaaccctcttaaaccctttcaccggatgcacaattacccttccaccagtacgcacaacacatggccattacatcaagaaggttgtattgtctgcagacccttctttgtgccctgatgactttgaagctctggtaatgtatatgcattactcttgcaccaaactgatcaaactagcccattttaagtcagggcaagatgcttggactcgcatagatcatcgtagaatggaactttcttatgcaatgtattacagaggcaagtttctaatttggaatgaccattgtgaaattttttcagtttatgatagtagcaaaggaacgaaggtactccttgattatagatgggtactccttgcttatagatctttatatgttcaggatagtagaatataccttgtggaatcgtccaagggagatctattgctgattatgaagggaccatcgtctgaagatctgcacatcaacgttttcaagttgttgagtgatttaaataatgaattcaaatgcttaaagattgagagtatcggatatgatgctttgtttttggatcgtaaccagtctatctgtgtctctgctttagaatttccagagtgtcatccaaattcaatatacttcgtcaatggtacattcaacttggaaaaccaaaaaatgcattggcgttacctctcaataccaacattatcagcaatatggagttcaccaactatatgctttgaaaatcgcctttaccaacaacaaatgagggtgctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

384

Amino Acids

44.52

Weight (kDa)

8.52

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12381
malus_domestica	MD05G1250900.v1.1 MD10G1231500.v1.1
prunus_persica	Prupe.6G183700_v2.0.a1 Prupe.6G184200_v2.0.a1 Prupe.6G184600_v2.0.a1 Prupe.8G064600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020191 RchiOBHm_Chr5g0020201
rosa_laevigata	RLG00000032508 RLG00000032510 RLG00000032511 RLG00000032585 RLG00000033606
rosa_multiflora	Rmu_sc0002087.1_g000011 Rmu_sc0002087.1_g000012 Rmu_ssc0000244.1_g000031
rosa_roxburghii	Rroxscaffold_1G00057970 Rroxscaffold_1G00058000 Rroxscaffold_1G00058010
rosa_rugosa	Rorug05G0057600 Rorug05G0057700 Rorug05G0057800
rosa_samantha	Rh5AG148000 Rh5AG148100 Rh5BG147600 Rh5BG147700 Rh5BG147800 Rh5CG159000 Rh5CG159100 Rh5CG274700 Rh5DG146800 Rh5DG146900 Rh5DG153600 Rh5DG252100
rosa_wichuraiana	Rw5G013090 Rw5G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	294
AccII	CGCG	1 cut(s)	196
AciI	CCGC	2 cut(s)	194, 386
AclI	AACGTT	1 cut(s)	867
AclWI	GGATC	1 cut(s)	957
AcoI	YGGCCR	1 cut(s)	466
AcsI	RAATTY	4 cut(s)	690, 899, 983, 1003
AcuI	CTGAAG	1 cut(s)	870
AfaI	GTAC	5 cut(s)	259, 453, 729, 750, 1027
AfiI	CCNNNNNNNGG	2 cut(s)	372, 425
AgsI	TTSAA	9 cut(s)	107, 316, 322, 527, 874, 904, 1008, 1033, 1118
AluBI	AGCT	1 cut(s)	530
AluI	AGCT	1 cut(s)	530
Alw26I	GTCTC	1 cut(s)	976
AlwI	GGATC	1 cut(s)	957
AoxI	GGCC	2 cut(s)	270, 466
ApeKI	GCWGC	1 cut(s)	190
ApoI	RAATTY	4 cut(s)	690, 899, 983, 1003
Asp700I	GAANNNNTTC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	839
AsuHPI	GGTGA	2 cut(s)	415, 1092
AvaII	GGWCC	1 cut(s)	839
BaeGI	GKGCMC	1 cut(s)	515
BalI	TGGCCA	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	738, 850
BclI	TGATCA	1 cut(s)	567
BcoDI	GTCTC	1 cut(s)	976
BfaI	CTAG	2 cut(s)	300, 575
BfmI	CTRYAG	1 cut(s)	495
BfuAI	ACCTGC	1 cut(s)	294
BglII	AGATCT	3 cut(s)	764, 817, 853
BisI	GCNGC	2 cut(s)	191, 194
BlsI	GCNGC	2 cut(s)	192, 195
Bme18I	GGWCC	1 cut(s)	839
BmgT120I	GGNCC	1 cut(s)	839
BmiI	GGNNCC	1 cut(s)	840
BmsI	GCATC	4 cut(s)	379, 419, 589, 925
BoxI	GACNNNNGTC	1 cut(s)	844
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	5 cut(s)	51, 80, 348, 367, 810
BsaWI	WCCGGW	2 cut(s)	135, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 425
Bse1I	ACTGG	2 cut(s)	449, 958
Bse3DI	GCAATG	1 cut(s)	651
Bse8I	GATNNNNATC	1 cut(s)	119
BseDI	CCNNGG	5 cut(s)	51, 80, 348, 367, 810
BseGI	GGATG	3 cut(s)	394, 434, 997
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	2 cut(s)	372, 425
BseMI	GCAATG	1 cut(s)	651
BseNI	ACTGG	2 cut(s)	449, 958
BseRI	GAGGAG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	515
BseXI	GCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	842
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	272, 468
BsiSI	CCGG	2 cut(s)	136, 426
BslFI	GGGAC	2 cut(s)	98, 852
BslI	CCNNNNNNNGG	2 cut(s)	372, 425
BsmAI	GTCTC	1 cut(s)	976
BsmFI	GGGAC	2 cut(s)	98, 852
BsnI	GGCC	2 cut(s)	272, 468
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp143I	GATC	8 cut(s)	120, 164, 567, 616, 764, 817, 853, 949
Bsp19I	CCATGG	1 cut(s)	367
BspACI	CCGC	2 cut(s)	194, 386
BspANI	GGCC	2 cut(s)	272, 468
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	840
BspMAI	CTGCAG	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	294
BspPI	GGATC	1 cut(s)	957
BsrDI	GCAATG	1 cut(s)	651
BsrI	ACTGG	2 cut(s)	449, 958
BssECI	CCNNGG	5 cut(s)	51, 80, 348, 367, 810
BssMI	GATC	8 cut(s)	120, 164, 567, 616, 764, 817, 853, 949
BssT1I	CCWWGG	5 cut(s)	51, 80, 348, 367, 810
Bst4CI	ACNGT	2 cut(s)	31, 257
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	367
BstEII	GGTNACC	1 cut(s)	403
BstF5I	GGATG	3 cut(s)	394, 434, 997
BstFNI	CGCG	1 cut(s)	196
BstKTI	GATC	8 cut(s)	123, 167, 570, 619, 767, 820, 856, 952
BstMAI	GTCTC	1 cut(s)	976
BstMBI	GATC	8 cut(s)	120, 164, 567, 616, 764, 817, 853, 949
BstPAI	GACNNNNGTC	1 cut(s)	844
BstPI	GGTNACC	1 cut(s)	403
BstSFI	CTRYAG	1 cut(s)	495
BstSLI	GKGCMC	1 cut(s)	515
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	3 cut(s)	764, 817, 853
BstYI	RGATCY	3 cut(s)	764, 817, 853
BsuRI	GGCC	2 cut(s)	272, 468
BtgI	CCRYGG	1 cut(s)	367
BtsCI	GGATG	3 cut(s)	394, 434, 997
BtsIMutI	CAGTG	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	839
Csp6I	GTAC	5 cut(s)	258, 452, 728, 749, 1026
CspCI	CAANNNNNGTGG	6 cut(s)	12, 47, 249, 284, 337, 372
CviAII	CATG	5 cut(s)	72, 207, 248, 368, 464
CviJI	RGCY	7 cut(s)	76, 193, 272, 380, 468, 530, 578
CviKI_1	RGCY	7 cut(s)	76, 193, 272, 380, 468, 530, 578
CviQI	GTAC	5 cut(s)	258, 452, 728, 749, 1026
DpnI	GATC	8 cut(s)	122, 166, 569, 618, 766, 819, 855, 951
DpnII	GATC	8 cut(s)	120, 164, 567, 616, 764, 817, 853, 949
DraI	TTTAAA	1 cut(s)	891
EaeI	YGGCCR	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	5 cut(s)	51, 80, 348, 367, 810
Eco47I	GGWCC	1 cut(s)	839
Eco57I	CTGAAG	1 cut(s)	870
Eco91I	GGTNACC	1 cut(s)	403
EcoO65I	GGTNACC	1 cut(s)	403
EcoRI	GAATTC	1 cut(s)	899
EcoT14I	CCWWGG	5 cut(s)	51, 80, 348, 367, 810
EcoT22I	ATGCAT	2 cut(s)	549, 1056
ErhI	CCWWGG	5 cut(s)	51, 80, 348, 367, 810
FaeI	CATG	5 cut(s)	75, 210, 251, 371, 467
FaqI	GGGAC	2 cut(s)	98, 852
FatI	CATG	5 cut(s)	71, 206, 247, 367, 463
FbaI	TGATCA	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	191, 194
FokI	GGATG	3 cut(s)	401, 441, 984
Fsp4HI	GCNGC	2 cut(s)	191, 194
FspBI	CTAG	2 cut(s)	300, 575
GluI	GCNGC	2 cut(s)	191, 194
HaeIII	GGCC	2 cut(s)	272, 468
HapII	CCGG	2 cut(s)	136, 426
Hin1II	CATG	5 cut(s)	75, 210, 251, 371, 467
HinfI	GANTC	5 cut(s)	100, 198, 203, 607, 803
HpaII	CCGG	2 cut(s)	136, 426
HphI	GGTGA	2 cut(s)	415, 1092
Hpy166II	GTNNAC	1 cut(s)	1100
Hpy188I	TCNGA	2 cut(s)	850, 929
Hpy188III	TCNNGA	5 cut(s)	92, 104, 478, 779, 989
Hpy8I	GTNNAC	1 cut(s)	1100
HpyAV	CCTTC	6 cut(s)	50, 452, 475, 513, 718, 829
HpyCH4III	ACNGT	2 cut(s)	31, 257
HpyCH4IV	ACGT	1 cut(s)	867
HpySE526I	ACGT	1 cut(s)	867
Hsp92II	CATG	5 cut(s)	75, 210, 251, 371, 467
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	8 cut(s)	120, 164, 567, 616, 764, 817, 853, 949
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	4 cut(s)	379, 419, 589, 925
MaeI	CTAG	2 cut(s)	300, 575
MaeII	ACGT	1 cut(s)	867
MaeIII	GTNAC	4 cut(s)	209, 403, 953, 1061
MalI	GATC	8 cut(s)	122, 166, 569, 618, 766, 819, 855, 951
MboI	GATC	8 cut(s)	120, 164, 567, 616, 764, 817, 853, 949
MboII	GAAGA	3 cut(s)	47, 354, 863
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	3 cut(s)	764, 817, 853
MhlI	GDGCHC	1 cut(s)	515
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	9 cut(s)	168, 317, 394, 435, 669, 690, 899, 983, 1003
MluNI	TGGCCA	1 cut(s)	468
MlyI	GAGTC	2 cut(s)	192, 601
MnlI	CCTC	8 cut(s)	31, 231, 234, 394, 419, 650, 1076, 1137
Mox20I	TGGCCA	1 cut(s)	468
Mph1103I	ATGCAT	2 cut(s)	549, 1056
MroXI	GAANNNNTTC	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	468
MseI	TTAA	5 cut(s)	309, 413, 585, 890, 911
Msp20I	TGGCCA	1 cut(s)	468
MspI	CCGG	2 cut(s)	136, 426
MunI	CAATTG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	367
NdeII	GATC	8 cut(s)	120, 164, 567, 616, 764, 817, 853, 949
NlaIII	CATG	5 cut(s)	75, 210, 251, 371, 467
NlaIV	GGNNCC	1 cut(s)	840
NmuCI	GTSAC	1 cut(s)	209
NsiI	ATGCAT	2 cut(s)	549, 1056
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	3 cut(s)	100, 203, 803
PkrI	GCNGC	2 cut(s)	192, 195
PleI	GAGTC	2 cut(s)	192, 601
PpsI	GAGTC	2 cut(s)	192, 601
PshAI	GACNNNNGTC	1 cut(s)	844
PsiI	TTATAA	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	867
PspEI	GGTNACC	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	840
PspPI	GGNCC	1 cut(s)	839
PstI	CTGCAG	1 cut(s)	499
PsuI	RGATCY	3 cut(s)	764, 817, 853
RsaI	GTAC	5 cut(s)	259, 453, 729, 750, 1027
RsaNI	GTAC	5 cut(s)	258, 452, 728, 749, 1026
SaqAI	TTAA	5 cut(s)	309, 413, 585, 890, 911
SatI	GCNGC	2 cut(s)	191, 194
Sau3AI	GATC	8 cut(s)	120, 164, 567, 616, 764, 817, 853, 949
Sau96I	GGNCC	1 cut(s)	839
SchI	GAGTC	2 cut(s)	192, 601
SduI	GDGCHC	1 cut(s)	515
SfaNI	GCATC	4 cut(s)	379, 419, 589, 925
SfcI	CTRYAG	1 cut(s)	495
SinI	GGWCC	1 cut(s)	839
SmiI	ATTTAAAT	1 cut(s)	891
Sse9I	AATT	9 cut(s)	168, 317, 394, 435, 669, 690, 899, 983, 1003
SsiI	CCGC	2 cut(s)	194, 386
SspMI	CTAG	2 cut(s)	300, 575
StyI	CCWWGG	5 cut(s)	51, 80, 348, 367, 810
SwaI	ATTTAAAT	1 cut(s)	891
TaaI	ACNGT	2 cut(s)	31, 257
TaiI	ACGT	1 cut(s)	870
TaqI	TCGA	1 cut(s)	201
TasI	AATT	9 cut(s)	168, 317, 394, 435, 669, 690, 899, 983, 1003
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	3 cut(s)	100, 203, 803
Tru1I	TTAA	5 cut(s)	309, 413, 585, 890, 911
Tru9I	TTAA	5 cut(s)	309, 413, 585, 890, 911
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	1 cut(s)	190
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	848, 912
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	839
XapI	RAATTY	4 cut(s)	690, 899, 983, 1003
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	2 cut(s)	300, 575
Zsp2I	ATGCAT	2 cut(s)	549, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.