Rh5BG147600

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003266
Physical Location & Seq
Reverse (-)
15159934 .. 15161368
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG147600.1

Sequence Viewer

Length: 672 bp
ATGGCTTCCAAGGGACATTCTGGATTTGATTCTCGAAAGGTTGATACAAATCAAAGACTATATCCGATTTGGTGTGGTTTGCAAGCATTGGCGATCAATTGCTCTACACCAAAAATGCAGCCAAAACTCGAAATATGTCACAAACTGCCTCCTCTAATGATTCTTATAAACCAACATGACAACGGTACTAGAAGTGCTGCCTTGCGTAGTGGCACACCAGACAAGACTAGCAGGTTTAAGTTGAAATTGAATGGTTTCCCTATTTACGATTTGACTAAGGATTGTGGTTCTTCTCATGGTTGGTTGGCTTATGCAAATGCCAATTTGGAGGTAACCCTCTTAAACCCTTTCACCGGATGCACAATTACCCTTCCACCAGTACGCACAACACATGGCCATTACATCAAGAATGTTGTATTGTCTGCAGACCCTTCTTTGTGCCCTGATGATTTTGAAGCTCTGGATAATAGAACATACCTTGTGGAATCGTCCAAGGGAGATCTACTGCTGGTTAGGAAGGTACCAGTGTATCCGCACATCAAGGTTTTCAAGTTGTTGAGTGATTTTAATGATGGACTCAGATGCGTAAAGATTGAGAGCACAGGAGTGAAGAGTCGAGGACAGTATTGCTTGGAAAGTGAAAAGCTAGAAGAGGAGCAAGTGAAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

223

Amino Acids

24.89

Weight (kDa)

8.72

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 76 - 146 2.7e-12 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 167
Acc36I ACCTGC 1 cut(s) 222
Acc65I GGTACC 1 cut(s) 520
AccB1I GGYRCC 1 cut(s) 520
AciI CCGC 1 cut(s) 533
AcoI YGGCCR 1 cut(s) 394
AfaI GTAC 3 cut(s) 187, 381, 522
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 4 cut(s) 244, 250, 455, 550
AleI CACNNNNGTG 1 cut(s) 605
AluBI AGCT 3 cut(s) 458, 646, 667
AluI AGCT 3 cut(s) 458, 646, 667
Alw21I GWGCWC 1 cut(s) 602
AoxI GGCC 1 cut(s) 394
ApeKI GCWGC 2 cut(s) 118, 197
Asp700I GAANNNNTTC 1 cut(s) 254
Asp718I GGTACC 1 cut(s) 520
AsuHPI GGTGA 1 cut(s) 343
BaeGI GKGCMC 1 cut(s) 443
BaeI ACNNNNGTAYC 4 cut(s) 512, 512, 545, 545
BalI TGGCCA 1 cut(s) 396
BanI GGYRCC 1 cut(s) 520
Bbv12I GWGCWC 1 cut(s) 602
BbvI GCAGC 2 cut(s) 130, 184
BccI CCATC 1 cut(s) 566
BciVI GTATCC 1 cut(s) 540
BfaI CTAG 3 cut(s) 189, 228, 647
BfmI CTRYAG 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 222
BfuI GTATCC 1 cut(s) 540
BglII AGATCT 1 cut(s) 499
BisI GCNGC 2 cut(s) 119, 198
BlsI GCNGC 2 cut(s) 120, 199
BmiI GGNNCC 1 cut(s) 522
BmsI GCATC 2 cut(s) 347, 572
BsaBI GATNNNNATC 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 9, 492
BsaWI WCCGGW 1 cut(s) 353
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 2 cut(s) 377, 524
Bse8I GATNNNNATC 1 cut(s) 48
BseDI CCNNGG 2 cut(s) 9, 492
BseGI GGATG 1 cut(s) 362
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMII CTCAG 1 cut(s) 592
BseNI ACTGG 2 cut(s) 377, 524
BseRI GAGGAG 2 cut(s) 141, 668
BseSI GKGCMC 1 cut(s) 443
BseXI GCAGC 2 cut(s) 130, 184
BshFI GGCC 1 cut(s) 396
BshNI GGYRCC 1 cut(s) 520
BsiHKAI GWGCWC 1 cut(s) 602
BsiSI CCGG 1 cut(s) 354
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 1 cut(s) 396
Bsp1286I GDGCHC 2 cut(s) 443, 602
Bsp143I GATC 2 cut(s) 93, 499
BspACI CCGC 1 cut(s) 533
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 1 cut(s) 591
BspLI GGNNCC 1 cut(s) 522
BspMAI CTGCAG 1 cut(s) 427
BspMI ACCTGC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 520
BsrI ACTGG 2 cut(s) 377, 524
BssECI CCNNGG 2 cut(s) 9, 492
BssMI GATC 2 cut(s) 93, 499
BssT1I CCWWGG 2 cut(s) 9, 492
Bst4CI ACNGT 2 cut(s) 185, 624
Bst6I CTCTTC 2 cut(s) 605, 645
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 276, 578
BstEII GGTNACC 1 cut(s) 331
BstF5I GGATG 1 cut(s) 362
BstKTI GATC 2 cut(s) 96, 502
BstMBI GATC 2 cut(s) 93, 499
BstMWI GCNNNNNNNGC 1 cut(s) 664
BstPI GGTNACC 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 423
BstSLI GKGCMC 1 cut(s) 443
BstV1I GCAGC 2 cut(s) 130, 184
BstX2I RGATCY 1 cut(s) 499
BstYI RGATCY 1 cut(s) 499
BsuI GTATCC 1 cut(s) 540
BsuRI GGCC 1 cut(s) 396
BtsCI GGATG 1 cut(s) 362
BtsIMutI CAGTG 1 cut(s) 531
BveI ACCTGC 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 84
Csp6I GTAC 3 cut(s) 186, 380, 521
CviAII CATG 3 cut(s) 176, 296, 392
CviJI RGCY 7 cut(s) 5, 121, 308, 396, 458, 646, 667
CviKI_1 RGCY 7 cut(s) 5, 121, 308, 396, 458, 646, 667
CviQI GTAC 3 cut(s) 186, 380, 521
DdeI CTNAG 2 cut(s) 276, 578
DpnI GATC 2 cut(s) 95, 501
DpnII GATC 2 cut(s) 93, 499
EaeI YGGCCR 1 cut(s) 394
Eam1104I CTCTTC 2 cut(s) 605, 645
EarI CTCTTC 2 cut(s) 605, 645
Eco130I CCWWGG 2 cut(s) 9, 492
Eco91I GGTNACC 1 cut(s) 331
EcoO65I GGTNACC 1 cut(s) 331
EcoT14I CCWWGG 2 cut(s) 9, 492
ErhI CCWWGG 2 cut(s) 9, 492
FaeI CATG 3 cut(s) 179, 299, 395
FaiI YATR 8 cut(s) 61, 136, 167, 177, 297, 312, 393, 475
FalI AAGNNNNNCTT 1 cut(s) 651
FaqI GGGAC 1 cut(s) 27
FatI CATG 3 cut(s) 175, 295, 391
Fnu4HI GCNGC 2 cut(s) 119, 198
FokI GGATG 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 119, 198
FspBI CTAG 3 cut(s) 189, 228, 647
GluI GCNGC 2 cut(s) 119, 198
HaeIII GGCC 1 cut(s) 396
HapII CCGG 1 cut(s) 354
Hin1II CATG 3 cut(s) 179, 299, 395
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 5 cut(s) 29, 160, 485, 576, 613
HpaII CCGG 1 cut(s) 354
HphI GGTGA 1 cut(s) 343
Hpy188I TCNGA 2 cut(s) 66, 581
Hpy188III TCNNGA 4 cut(s) 21, 33, 406, 461
HpyAV CCTTC 3 cut(s) 380, 441, 511
HpyCH4III ACNGT 2 cut(s) 185, 624
HpyCH4V TGCA 5 cut(s) 82, 118, 314, 360, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 664
HpyF3I CTNAG 2 cut(s) 276, 578
Hsp92II CATG 3 cut(s) 179, 299, 395
KpnI GGTACC 1 cut(s) 524
Kzo9I GATC 2 cut(s) 93, 499
LmnI GCTCC 1 cut(s) 655
Lsp1109I GCAGC 2 cut(s) 130, 184
LweI GCATC 2 cut(s) 347, 572
MaeI CTAG 3 cut(s) 189, 228, 647
MaeIII GTNAC 2 cut(s) 137, 331
MalI GATC 2 cut(s) 95, 501
MboI GATC 2 cut(s) 93, 499
MboII GAAGA 3 cut(s) 282, 622, 662
MfeI CAATTG 1 cut(s) 97
MflI RGATCY 1 cut(s) 499
MhlI GDGCHC 2 cut(s) 443, 602
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 4 cut(s) 97, 245, 322, 363
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 2 cut(s) 570, 622
MnlI CCTC 6 cut(s) 159, 162, 322, 347, 611, 646
Mox20I TGGCCA 1 cut(s) 396
MroXI GAANNNNTTC 1 cut(s) 254
MscI TGGCCA 1 cut(s) 396
MseI TTAA 4 cut(s) 237, 341, 567, 670
MslI CAYNNNNRTG 1 cut(s) 605
Msp20I TGGCCA 1 cut(s) 396
MspI CCGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 664
NdeII GATC 2 cut(s) 93, 499
NlaIII CATG 3 cut(s) 179, 299, 395
NlaIV GGNNCC 1 cut(s) 522
NmuCI GTSAC 1 cut(s) 137
OliI CACNNNNGTG 1 cut(s) 605
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 3 cut(s) 29, 160, 485
PkrI GCNGC 2 cut(s) 120, 199
PleI GAGTC 2 cut(s) 570, 621
PpsI GAGTC 2 cut(s) 570, 621
PsiI TTATAA 1 cut(s) 167
PspEI GGTNACC 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 522
PstI CTGCAG 1 cut(s) 427
PsuI RGATCY 1 cut(s) 499
RsaI GTAC 3 cut(s) 187, 381, 522
RsaNI GTAC 3 cut(s) 186, 380, 521
RseI CAYNNNNRTG 1 cut(s) 605
SaqAI TTAA 4 cut(s) 237, 341, 567, 670
SatI GCNGC 2 cut(s) 119, 198
Sau3AI GATC 2 cut(s) 93, 499
SchI GAGTC 2 cut(s) 570, 622
SduI GDGCHC 2 cut(s) 443, 602
SetI ASST 9 cut(s) 42, 236, 333, 460, 480, 522, 546, 648, 669
SfaNI GCATC 2 cut(s) 347, 572
SfcI CTRYAG 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 605
Sse9I AATT 4 cut(s) 97, 245, 322, 363
SsiI CCGC 1 cut(s) 533
SspMI CTAG 3 cut(s) 189, 228, 647
StyI CCWWGG 2 cut(s) 9, 492
TaaI ACNGT 2 cut(s) 185, 624
TaqI TCGA 3 cut(s) 34, 129, 616
TasI AATT 4 cut(s) 97, 245, 322, 363
TfiI GAWTC 3 cut(s) 29, 160, 485
Tru1I TTAA 4 cut(s) 237, 341, 567, 670
Tru9I TTAA 4 cut(s) 237, 341, 567, 670
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 2 cut(s) 118, 197
Tsp45I GTSAC 1 cut(s) 137
TspRI CASTG 1 cut(s) 531
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 3 cut(s) 189, 228, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.