Rh5BG147800

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003266
Physical Location & Seq
Reverse (-)
15168254 .. 15169585
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG147800.1

Sequence Viewer

Length: 1113 bp
ATGGCAGAGCAGGCAATCATATCAACCATGGTTTCATCTCCTGACTGGGCTTGGCTCCCAAGCAACCTTCTGGATTCGATACTAGAAAAATTGATACCAATCACTGACTACATCCGGTTCGGTGCAGTTTGCAAGCATTGGCAATCCGCGGCGTCGCATCAGAAAGAGCATCGCATGAAATCATGTCACAAACAGCTTCCTATGCTCATGAAGATTACTAGAAACTACAAAGACGAAGGCCGGGTTGCCGCCTTGTTTAGTGTGGCACAAGGAGGTAAGCTGAGGCAGTTGAACTATATGCCTTATTACATTAAGAACAAGCAGCCTTTTTCTGGGATGACGTGGTACGGTTCCACACATGGTTGGTTGGTTTATGATGAAAGCAATTCTGTACTGACCTTGTTGAACCCTTTCACCAGGCATACCATTACTCTTCCACCACTCAGAGAACCCACAGATGCAAGGGCTTTTATTCATTGGGTTAAATTGTCGGCTGACCCATGTTTGTGTCCTAATGATTATGAAGTTCTAGTACGATACAATAGTATAGAGTTTGATTCGGTAACCAGTCTAGCATATTTTAGATCAGGGGATGATACTTGGACTCAAATAGGTGATGAAAGTTTCGCCAGCAAAGTTAGTGATGCAGTTTATTATAAAGGCCAGTTTGTTGCTCTTACCCGTTCGGAATTGCCGGCCAACTTTACCATTAACTTTAGCAGCATACCAACTACCAAATTCGAATCTCATGATCCATATTCAAGTTATATGATCTCGGAATATATTCTCGAATCTTCCGGGGGAGATTTATTGTTGGTTAAGAGGATTGAAGTATCTATGACGTCTAAGAAGTGCATACAAGTTTTCAAATTGTTGCATGCAGATGGGGATATGCCTAGATGGGTAGCGATTAAGAGTATTGGAAGTGATGTTTTGTTTTTGTGTATCCGTTCAGCTATGAGTGTATCCGCATTAGACTTTCCACAGTGTGTTCCGAATTCCTTATACTTCACAGACGGTGTCTTCAATTTGGAGAAAACGGAGGAATGGATTGAAAAAGACACTTTAGGATTGTACAACTCACTATTATGGGTTTCTCCCACTATAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

370

Amino Acids

42.15

Weight (kDa)

6.32

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 104 - 360 7.1e-43 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 657
AatII GACGTC 1 cut(s) 845
AccII CGCG 1 cut(s) 149
AciI CCGC 4 cut(s) 147, 149, 249, 969
AclWI GGATC 1 cut(s) 746
AcoI YGGCCR 1 cut(s) 696
AcsI RAATTY 2 cut(s) 737, 997
AcyI GRCGYC 2 cut(s) 152, 842
AdeI CACNNNGTG 1 cut(s) 989
AfaI GTAC 4 cut(s) 347, 393, 534, 1076
AfiI CCNNNNNNNGG 2 cut(s) 332, 1107
AgsI TTSAA 7 cut(s) 292, 406, 762, 830, 868, 1027, 1055
AjiI CACGTC 1 cut(s) 342
AjnI CCWGG 1 cut(s) 416
AluBI AGCT 3 cut(s) 196, 280, 956
AluI AGCT 3 cut(s) 196, 280, 956
AlwI GGATC 1 cut(s) 746
AoxI GGCC 3 cut(s) 238, 661, 696
ApeKI GCWGC 2 cut(s) 322, 720
ApoI RAATTY 2 cut(s) 737, 997
Asp700I GAANNNNTTC 2 cut(s) 410, 783
AsuC2I CCSGG 2 cut(s) 242, 799
AsuHPI GGTGA 2 cut(s) 406, 626
AsuII TTCGAA 1 cut(s) 741
BaeI ACNNNNGTAYC 2 cut(s) 529, 562
BarI GAAGNNNNNNTAC 2 cut(s) 516, 548
BbsI GAAGAC 1 cut(s) 1015
BbvCI CCTCAGC 1 cut(s) 281
BbvI GCAGC 2 cut(s) 334, 732
BccI CCATC 2 cut(s) 878, 894
BciT130I CCWGG 1 cut(s) 418
BciVI GTATCC 2 cut(s) 956, 976
BcnI CCSGG 2 cut(s) 242, 799
BfaI CTAG 5 cut(s) 83, 219, 530, 572, 897
BfuI GTATCC 2 cut(s) 956, 976
BisI GCNGC 4 cut(s) 150, 249, 323, 721
BlsI GCNGC 4 cut(s) 151, 250, 324, 722
Bme1390I CCNGG 3 cut(s) 242, 418, 799
BmgBI CACGTC 1 cut(s) 342
BmiI GGNNCC 2 cut(s) 56, 352
BmrFI CCNGG 3 cut(s) 242, 418, 799
BmrI ACTGGG 1 cut(s) 55
BmsI GCATC 4 cut(s) 166, 178, 448, 634
BmuI ACTGGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 1015
Bpu10I CCTNAGC 1 cut(s) 281
Bpu14I TTCGAA 1 cut(s) 741
BpuMI CCSGG 2 cut(s) 242, 799
BsaBI GATNNNNATC 1 cut(s) 98
BsaHI GRCGYC 2 cut(s) 152, 842
BsaJI CCNNGG 3 cut(s) 27, 147, 798
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 2 cut(s) 332, 1107
Bse118I RCCGGY 1 cut(s) 694
Bse1I ACTGG 3 cut(s) 50, 567, 664
Bse8I GATNNNNATC 1 cut(s) 98
BseBI CCWGG 1 cut(s) 418
BseDI CCNNGG 3 cut(s) 27, 147, 798
BseGI GGATG 3 cut(s) 111, 342, 598
BseJI GATNNNNATC 1 cut(s) 98
BseLI CCNNNNNNNGG 2 cut(s) 332, 1107
BseMII CTCAG 2 cut(s) 272, 457
BseNI ACTGG 3 cut(s) 50, 567, 664
BseXI GCAGC 2 cut(s) 334, 732
BsgI GTGCAG 1 cut(s) 144
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 3 cut(s) 240, 663, 698
BsiSI CCGG 4 cut(s) 115, 241, 695, 798
BslI CCNNNNNNNGG 2 cut(s) 332, 1107
BsnI GGCC 3 cut(s) 240, 663, 698
Bsp119I TTCGAA 1 cut(s) 741
Bsp1407I TGTACA 1 cut(s) 1074
Bsp143I GATC 3 cut(s) 584, 751, 771
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 4 cut(s) 147, 149, 249, 969
BspANI GGCC 3 cut(s) 240, 663, 698
BspCNI CTCAG 2 cut(s) 273, 456
BspFNI CGCG 1 cut(s) 149
BspHI TCATGA 2 cut(s) 207, 748
BspLI GGNNCC 2 cut(s) 56, 352
BspPI GGATC 1 cut(s) 746
BspT104I TTCGAA 1 cut(s) 741
BsrFI RCCGGY 1 cut(s) 694
BsrGI TGTACA 1 cut(s) 1074
BsrI ACTGG 3 cut(s) 50, 567, 664
BssAI RCCGGY 1 cut(s) 694
BssECI CCNNGG 3 cut(s) 27, 147, 798
BssMI GATC 3 cut(s) 584, 751, 771
BssNI GRCGYC 2 cut(s) 152, 842
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 418
Bst4CI ACNGT 3 cut(s) 350, 987, 1019
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 2 cut(s) 152, 842
BstAUI TGTACA 1 cut(s) 1074
BstBI TTCGAA 1 cut(s) 741
BstC8I GCNNGC 5 cut(s) 12, 134, 631, 696, 879
BstDEI CTNAG 3 cut(s) 281, 443, 846
BstDSI CCRYGG 2 cut(s) 27, 147
BstEII GGTNACC 1 cut(s) 562
BstF5I GGATG 3 cut(s) 111, 342, 598
BstFNI CGCG 1 cut(s) 149
BstKTI GATC 3 cut(s) 587, 754, 774
BstMBI GATC 3 cut(s) 584, 751, 771
BstMWI GCNNNNNNNGC 2 cut(s) 11, 202
BstNI CCWGG 1 cut(s) 418
BstNSI RCATGY 1 cut(s) 881
BstPI GGTNACC 1 cut(s) 562
BstSCI CCNGG 3 cut(s) 240, 416, 797
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 334, 732
BstV2I GAAGAC 1 cut(s) 1015
BsuI GTATCC 2 cut(s) 956, 976
BsuRI GGCC 3 cut(s) 240, 663, 698
BtgI CCRYGG 2 cut(s) 27, 147
BtgZI GCGATG 1 cut(s) 155
BtrI CACGTC 1 cut(s) 342
BtsCI GGATG 3 cut(s) 111, 342, 598
BtsIMutI CAGTG 2 cut(s) 102, 992
Cac8I GCNNGC 5 cut(s) 12, 134, 631, 696, 879
CciI TCATGA 2 cut(s) 207, 748
Cfr10I RCCGGY 1 cut(s) 694
Cfr42I CCGCGG 1 cut(s) 150
CseI GACGC 1 cut(s) 141
Csp6I GTAC 4 cut(s) 346, 392, 533, 1075
CviAII CATG 8 cut(s) 28, 175, 183, 208, 359, 501, 749, 878
CviQI GTAC 4 cut(s) 346, 392, 533, 1075
DdeI CTNAG 3 cut(s) 281, 443, 846
DpnI GATC 3 cut(s) 586, 753, 773
DpnII GATC 3 cut(s) 584, 751, 771
DraIII CACNNNGTG 1 cut(s) 989
EaeI YGGCCR 1 cut(s) 696
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 27
Eco91I GGTNACC 1 cut(s) 562
EcoO65I GGTNACC 1 cut(s) 562
EcoRI GAATTC 1 cut(s) 997
EcoRII CCWGG 1 cut(s) 416
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 8 cut(s) 31, 178, 186, 211, 362, 504, 752, 881
FatI CATG 8 cut(s) 27, 174, 182, 207, 358, 500, 748, 877
Fnu4HI GCNGC 4 cut(s) 150, 249, 323, 721
FokI GGATG 3 cut(s) 98, 349, 605
Fsp4HI GCNGC 4 cut(s) 150, 249, 323, 721
FspBI CTAG 5 cut(s) 83, 219, 530, 572, 897
GluI GCNGC 4 cut(s) 150, 249, 323, 721
HaeIII GGCC 3 cut(s) 240, 663, 698
HapII CCGG 4 cut(s) 115, 241, 695, 798
HgaI GACGC 1 cut(s) 141
Hin1I GRCGYC 2 cut(s) 152, 842
Hin1II CATG 8 cut(s) 31, 178, 186, 211, 362, 504, 752, 881
HinfI GANTC 5 cut(s) 74, 557, 604, 743, 791
HpaII CCGG 4 cut(s) 115, 241, 695, 798
HphI GGTGA 2 cut(s) 406, 626
Hpy188I TCNGA 5 cut(s) 162, 446, 688, 778, 996
Hpy188III TCNNGA 5 cut(s) 41, 71, 208, 749, 788
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 77, 230
HpyCH4III ACNGT 3 cut(s) 350, 987, 1019
HpyCH4IV ACGT 2 cut(s) 341, 842
HpyCH4V TGCA 7 cut(s) 125, 132, 461, 647, 855, 877, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 202
HpyF3I CTNAG 3 cut(s) 281, 443, 846
HpySE526I ACGT 2 cut(s) 341, 842
Hsp92I GRCGYC 2 cut(s) 152, 842
Hsp92II CATG 8 cut(s) 31, 178, 186, 211, 362, 504, 752, 881
KroI GCCGGC 1 cut(s) 694
KroNI GCCGGC 1 cut(s) 696
KspI CCGCGG 1 cut(s) 150
Kzo9I GATC 3 cut(s) 584, 751, 771
LmnI GCTCC 1 cut(s) 60
Lsp1109I GCAGC 2 cut(s) 334, 732
LweI GCATC 4 cut(s) 166, 178, 448, 634
MaeI CTAG 5 cut(s) 83, 219, 530, 572, 897
MaeII ACGT 2 cut(s) 341, 842
MaeIII GTNAC 2 cut(s) 185, 562
MalI GATC 3 cut(s) 586, 753, 773
MboI GATC 3 cut(s) 584, 751, 771
MboII GAAGA 4 cut(s) 223, 425, 786, 1015
MluCI AATT 8 cut(s) 89, 385, 485, 689, 737, 869, 997, 1027
MlyI GAGTC 1 cut(s) 598
MnlI CCTC 4 cut(s) 266, 276, 816, 1036
MroNI GCCGGC 1 cut(s) 694
MroXI GAANNNNTTC 2 cut(s) 410, 783
MseI TTAA 5 cut(s) 312, 483, 711, 819, 912
MslI CAYNNNNRTG 3 cut(s) 505, 882, 1087
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 4 cut(s) 115, 241, 695, 798
MspR9I CCNGG 3 cut(s) 242, 418, 799
MvaI CCWGG 1 cut(s) 418
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 11, 202
NaeI GCCGGC 1 cut(s) 696
NciI CCSGG 2 cut(s) 242, 799
NcoI CCATGG 1 cut(s) 27
NdeII GATC 3 cut(s) 584, 751, 771
NgoMIV GCCGGC 1 cut(s) 694
NlaIII CATG 8 cut(s) 31, 178, 186, 211, 362, 504, 752, 881
NlaIV GGNNCC 2 cut(s) 56, 352
NmuCI GTSAC 1 cut(s) 185
NspI RCATGY 1 cut(s) 881
NspV TTCGAA 1 cut(s) 741
PaeI GCATGC 1 cut(s) 881
PagI TCATGA 2 cut(s) 207, 748
PdiI GCCGGC 1 cut(s) 696
PdmI GAANNNNTTC 2 cut(s) 410, 783
PfeI GAWTC 4 cut(s) 74, 557, 743, 791
PflFI GACNNNGTC 1 cut(s) 1019
PkrI GCNGC 4 cut(s) 151, 250, 324, 722
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
PsiI TTATAA 1 cut(s) 657
Psp6I CCWGG 1 cut(s) 416
PspEI GGTNACC 1 cut(s) 562
PspGI CCWGG 1 cut(s) 416
PspN4I GGNNCC 2 cut(s) 56, 352
PsyI GACNNNGTC 1 cut(s) 1019
RsaI GTAC 4 cut(s) 347, 393, 534, 1076
RsaNI GTAC 4 cut(s) 346, 392, 533, 1075
RseI CAYNNNNRTG 3 cut(s) 505, 882, 1087
SacII CCGCGG 1 cut(s) 150
SaqAI TTAA 5 cut(s) 312, 483, 711, 819, 912
SatI GCNGC 4 cut(s) 150, 249, 323, 721
Sau3AI GATC 3 cut(s) 584, 751, 771
SchI GAGTC 1 cut(s) 598
ScrFI CCNGG 3 cut(s) 242, 418, 799
SfaNI GCATC 4 cut(s) 166, 178, 448, 634
Sfr303I CCGCGG 1 cut(s) 150
SfuI TTCGAA 1 cut(s) 741
SgrBI CCGCGG 1 cut(s) 150
SmiMI CAYNNNNRTG 3 cut(s) 505, 882, 1087
SphI GCATGC 1 cut(s) 881
Sse9I AATT 8 cut(s) 89, 385, 485, 689, 737, 869, 997, 1027
SsiI CCGC 4 cut(s) 147, 149, 249, 969
SspMI CTAG 5 cut(s) 83, 219, 530, 572, 897
StyD4I CCNGG 3 cut(s) 240, 416, 797
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 3 cut(s) 350, 987, 1019
TaiI ACGT 2 cut(s) 344, 845
TaqI TCGA 3 cut(s) 77, 741, 789
TasI AATT 8 cut(s) 89, 385, 485, 689, 737, 869, 997, 1027
TatI WGTACW 2 cut(s) 391, 1074
TauI GCSGC 2 cut(s) 152, 251
TfiI GAWTC 4 cut(s) 74, 557, 743, 791
Tru1I TTAA 5 cut(s) 312, 483, 711, 819, 912
Tru9I TTAA 5 cut(s) 312, 483, 711, 819, 912
TscAI CASTG 2 cut(s) 109, 992
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 2 cut(s) 322, 720
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 7 cut(s) 24, 191, 224, 393, 464, 537, 633
TspGWI ACGGA 2 cut(s) 938, 1055
TspRI CASTG 2 cut(s) 109, 992
Tth111I GACNNNGTC 1 cut(s) 1019
XapI RAATTY 2 cut(s) 737, 997
XceI RCATGY 1 cut(s) 881
XmnI GAANNNNTTC 2 cut(s) 410, 783
XspI CTAG 5 cut(s) 83, 219, 530, 572, 897
ZraI GACGTC 1 cut(s) 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.