Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003266

Physical Location & Seq

Genomic Coordinates Forward (+)

19163339 .. 19164535

Gene Structure 1197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G183700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGGAGAGGCAATATCATCAACTGTAGTTTCAGGTTGGGCATGGCTCCCGAGCGACCTTTTGTATCTGATAGTAGAGAAGTTGATACCAATCACTGACTGTATCCGGCTTGGTGCAGTTTGCAAGAATTGGCAATCAGTAGCTCGTCATCAGAAGCATCAGCGCCTCAAATCATGTCACAAGCAGCTTCCAATGCTAATGGTTCCCAGCAAACACAACCGCCACGAAAGGCGTGGCTTGTATAGTGTCGCAAAAGGAGAGACTTGCAGCTTTGAGTTGCATGTGCCTTACAATAAAAGGCTATGCGGTTCTTCCCATGGTTGGTTGGCTTGTGTGGATGAAAATTTGGAAGTAACCCTTTTAAACCCTTTCACCAAACGTACTGTTCATCTTCCACCATTCACACAAGTCCCTCAACCCATACACAAACAAGCATATAGAAGTGATCACTACATTAAGAAGGTTGTATTGTCTGCAGACCCTTCTTTGTTTCCAAATGATTACGAAGCTGTGGCACTTTTCGATAGTAATGGAACCAGAGTGGCTCATATTAAGTCAGGGGATCATGGTTGGACTCACATAGATCAAACAATCAGATTCTTTTATGGTCTGAATCAAGTGATCGGATTCGATGATGTGATCTATTACAGAGGCCAGTTTCTTGCTGCTAGTAGGGAGGGTGGGGTTTTTGCAATAAACGTTAGCAAGGATCCAACTTATAAACCTCATGTAAGCTTAGTTGTACCAATCGTTCAAGGTATTGATGACCAAGCATATCTTGTGGAATCGTCCAGTGGAGATCTATTGCTGGTTAGGAAGTTCCAAAGTATGAATTATGTTGAGTGTTTTACTGAGATTTTGAGCTTCAAGGTTTTCAAGCTGTTCTCTGATTGTGGGGATAAAATCGGAAGTGAACGGATTGAGGAGATTGATAGTATTGGAAACGATGCTTTTTTCTTAGGTGGCAATAATCACTCCATATGTGTCTCAGCTTTAGACTTTATAGGTTGTCATCCGAATTCCATATACTTCTGCATTGATAAATGGGTGGGTGTTGCTTATGATGAAGTTCAAGAGCCTCTTGGCATGGCTGTCTTCAATTTTGAAAACAGAAAATTTGGAACAAATTACTACTGCTCAAGTCCTTCACAGAAGTACATGCCACCATCAACTTGGATTTTGCCCACCATGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

399

Amino Acids

45.0

Weight (kDa)

6.75

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12381
malus_domestica	MD05G1250900.v1.1 MD10G1231500.v1.1
prunus_persica	Prupe.6G183700_v2.0.a1 Prupe.6G184200_v2.0.a1 Prupe.6G184600_v2.0.a1 Prupe.8G064600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020191 RchiOBHm_Chr5g0020201
rosa_laevigata	RLG00000032508 RLG00000032510 RLG00000032511 RLG00000032585 RLG00000033606
rosa_multiflora	Rmu_sc0002087.1_g000011 Rmu_sc0002087.1_g000012 Rmu_ssc0000244.1_g000031
rosa_roxburghii	Rroxscaffold_1G00057970 Rroxscaffold_1G00058000 Rroxscaffold_1G00058010
rosa_rugosa	Rorug05G0057600 Rorug05G0057700 Rorug05G0057800
rosa_samantha	Rh5AG148000 Rh5AG148100 Rh5BG147600 Rh5BG147700 Rh5BG147800 Rh5CG159000 Rh5CG159100 Rh5CG274700 Rh5DG146800 Rh5DG146900 Rh5DG153600 Rh5DG252100
rosa_wichuraiana	Rw5G013090 Rw5G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	720
AciI	CCGC	2 cut(s)	220, 306
AclI	AACGTT	1 cut(s)	699
AclWI	GGATC	3 cut(s)	570, 704, 717
AcsI	RAATTY	3 cut(s)	343, 1018, 1115
AfaI	GTAC	3 cut(s)	382, 744, 1157
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	6 cut(s)	755, 868, 877, 1073, 1099, 1106
AleI	CACNNNNGTG	1 cut(s)	1190
AluBI	AGCT	8 cut(s)	143, 187, 270, 509, 735, 864, 880, 992
AluI	AGCT	8 cut(s)	143, 187, 270, 509, 735, 864, 880, 992
Alw26I	GTCTC	2 cut(s)	254, 991
AlwI	GGATC	3 cut(s)	570, 704, 717
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	652
ApeKI	GCWGC	3 cut(s)	184, 267, 665
ApoI	RAATTY	3 cut(s)	343, 1018, 1115
AspLEI	GCGC	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	364
AvaI	CYCGRG	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	709
BbsI	GAAGAC	1 cut(s)	1087
BbvI	GCAGC	3 cut(s)	196, 279, 652
BccI	CCATC	1 cut(s)	1174
BciVI	GTATCC	1 cut(s)	113
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	2 cut(s)	254, 991
BfaI	CTAG	1 cut(s)	669
BfmI	CTRYAG	2 cut(s)	24, 474
BfoI	RGCGCY	1 cut(s)	166
BfuI	GTATCC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	799
BisI	GCNGC	3 cut(s)	185, 268, 666
BlsI	GCNGC	3 cut(s)	186, 269, 667
BmeT110I	CYCGRG	1 cut(s)	49
BmiI	GGNNCC	4 cut(s)	47, 204, 535, 711
BmsI	GCATC	2 cut(s)	166, 937
BpiI	GAAGAC	1 cut(s)	1087
BpuEI	CTTGAG	1 cut(s)	1123
BsaBI	GATNNNNATC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	316, 1188
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	655, 792
Bse8I	GATNNNNATC	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	316, 1188
BseGI	GGATG	2 cut(s)	343, 1012
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	843, 1002
BseNI	ACTGG	2 cut(s)	655, 792
BseRI	GAGGAG	1 cut(s)	938
BseXI	GCAGC	3 cut(s)	196, 279, 652
BseYI	CCCAGC	1 cut(s)	206
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	654
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	254, 991
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	654
BsoBI	CYCGRG	1 cut(s)	49
Bsp143I	GATC	7 cut(s)	445, 562, 583, 621, 639, 709, 799
Bsp19I	CCATGG	2 cut(s)	316, 1188
BspACI	CCGC	2 cut(s)	220, 306
BspANI	GGCC	1 cut(s)	654
BspCNI	CTCAG	2 cut(s)	844, 1001
BspLI	GGNNCC	4 cut(s)	47, 204, 535, 711
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	3 cut(s)	570, 704, 717
BsrI	ACTGG	2 cut(s)	655, 792
BssECI	CCNNGG	2 cut(s)	316, 1188
BssMI	GATC	7 cut(s)	445, 562, 583, 621, 639, 709, 799
BssT1I	CCWWGG	2 cut(s)	316, 1188
Bst4CI	ACNGT	3 cut(s)	25, 101, 385
BstDEI	CTNAG	4 cut(s)	736, 852, 958, 988
BstDSI	CCRYGG	2 cut(s)	316, 1188
BstF5I	GGATG	2 cut(s)	343, 1012
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	7 cut(s)	448, 565, 586, 624, 642, 712, 802
BstMAI	GTCTC	2 cut(s)	254, 991
BstMBI	GATC	7 cut(s)	445, 562, 583, 621, 639, 709, 799
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNSI	RCATGY	2 cut(s)	284, 1162
BstSFI	CTRYAG	2 cut(s)	24, 474
BstV1I	GCAGC	3 cut(s)	196, 279, 652
BstV2I	GAAGAC	1 cut(s)	1087
BstX2I	RGATCY	2 cut(s)	709, 799
BstXI	CCANNNNNNTGG	1 cut(s)	1173
BstYI	RGATCY	2 cut(s)	709, 799
BsuI	GTATCC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	654
BtgI	CCRYGG	2 cut(s)	316, 1188
BtsCI	GGATG	2 cut(s)	343, 1012
BtsIMutI	CAGTG	2 cut(s)	93, 799
CfoI	GCGC	1 cut(s)	165
Csp6I	GTAC	3 cut(s)	381, 743, 1156
CviAII	CATG	9 cut(s)	42, 174, 281, 317, 566, 728, 1087, 1159, 1189
CviQI	GTAC	3 cut(s)	381, 743, 1156
DdeI	CTNAG	4 cut(s)	736, 852, 958, 988
DpnI	GATC	7 cut(s)	447, 564, 585, 623, 641, 711, 801
DpnII	GATC	7 cut(s)	445, 562, 583, 621, 639, 709, 799
DraI	TTTAAA	1 cut(s)	363
Eco130I	CCWWGG	2 cut(s)	316, 1188
Eco88I	CYCGRG	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	1018
EcoT14I	CCWWGG	2 cut(s)	316, 1188
ErhI	CCWWGG	2 cut(s)	316, 1188
FaeI	CATG	9 cut(s)	45, 177, 284, 320, 569, 731, 1090, 1162, 1192
FalI	AAGNNNNNCTT	6 cut(s)	342, 374, 762, 794, 1065, 1097
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	9 cut(s)	41, 173, 280, 316, 565, 727, 1086, 1158, 1188
FauNDI	CATATG	1 cut(s)	980
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	3 cut(s)	185, 268, 666
FokI	GGATG	2 cut(s)	350, 999
Fsp4HI	GCNGC	3 cut(s)	185, 268, 666
FspBI	CTAG	1 cut(s)	669
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	3 cut(s)	185, 268, 666
GsaI	CCCAGC	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	654
HapII	CCGG	1 cut(s)	106
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	9 cut(s)	45, 177, 284, 320, 569, 731, 1090, 1162, 1192
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	733
HinfI	GANTC	5 cut(s)	574, 597, 613, 627, 785
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	914
Hpy188I	TCNGA	8 cut(s)	69, 153, 596, 612, 626, 889, 908, 1017
Hpy188III	TCNNGA	2 cut(s)	49, 1073
Hpy8I	GTNNAC	1 cut(s)	914
HpyAV	CCTTC	3 cut(s)	454, 492, 1155
HpyCH4III	ACNGT	3 cut(s)	25, 101, 385
HpyCH4IV	ACGT	2 cut(s)	379, 699
HpyCH4V	TGCA	7 cut(s)	116, 123, 267, 280, 476, 692, 1035
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	4 cut(s)	736, 852, 958, 988
HpySE526I	ACGT	2 cut(s)	379, 699
Hsp92II	CATG	9 cut(s)	45, 177, 284, 320, 569, 731, 1090, 1162, 1192
HspAI	GCGC	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	7 cut(s)	445, 562, 583, 621, 639, 709, 799
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	8 cut(s)	18, 119, 220, 543, 550, 668, 794, 805
Lsp1109I	GCAGC	3 cut(s)	196, 279, 652
LweI	GCATC	2 cut(s)	166, 937
MaeI	CTAG	1 cut(s)	669
MaeII	ACGT	2 cut(s)	379, 699
MaeIII	GTNAC	2 cut(s)	176, 352
MalI	GATC	7 cut(s)	447, 564, 585, 623, 641, 711, 801
MboI	GATC	7 cut(s)	445, 562, 583, 621, 639, 709, 799
MboII	GAAGA	3 cut(s)	303, 383, 1087
MflI	RGATCY	2 cut(s)	709, 799
MluCI	AATT	7 cut(s)	127, 343, 832, 1018, 1099, 1115, 1126
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	2 cut(s)	551, 737
MnlI	CCTC	7 cut(s)	176, 423, 644, 670, 735, 916, 1089
MseI	TTAA	3 cut(s)	362, 456, 552
MslI	CAYNNNNRTG	1 cut(s)	1190
MspI	CCGG	1 cut(s)	106
MwoI	GCNNNNNNNGC	1 cut(s)	193
NcoI	CCATGG	2 cut(s)	316, 1188
NdeI	CATATG	1 cut(s)	980
NdeII	GATC	7 cut(s)	445, 562, 583, 621, 639, 709, 799
NlaIII	CATG	9 cut(s)	45, 177, 284, 320, 569, 731, 1090, 1162, 1192
NlaIV	GGNNCC	4 cut(s)	47, 204, 535, 711
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	2 cut(s)	284, 1162
OliI	CACNNNNGTG	1 cut(s)	1190
PfeI	GAWTC	4 cut(s)	597, 613, 627, 785
PkrI	GCNGC	3 cut(s)	186, 269, 667
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PsiI	TTATAA	1 cut(s)	720
Psp1406I	AACGTT	1 cut(s)	699
PspFI	CCCAGC	1 cut(s)	206
PspN4I	GGNNCC	4 cut(s)	47, 204, 535, 711
PsrI	GAACNNNNNNTAC	2 cut(s)	735, 767
PstI	CTGCAG	1 cut(s)	478
PsuI	RGATCY	2 cut(s)	709, 799
RsaI	GTAC	3 cut(s)	382, 744, 1157
RsaNI	GTAC	3 cut(s)	381, 743, 1156
RseI	CAYNNNNRTG	1 cut(s)	1190
SaqAI	TTAA	3 cut(s)	362, 456, 552
SatI	GCNGC	3 cut(s)	185, 268, 666
Sau3AI	GATC	7 cut(s)	445, 562, 583, 621, 639, 709, 799
SchI	GAGTC	1 cut(s)	568
SfaNI	GCATC	2 cut(s)	166, 937
SfcI	CTRYAG	2 cut(s)	24, 474
SmiMI	CAYNNNNRTG	1 cut(s)	1190
SmlI	CTYRAG	1 cut(s)	1138
SmoI	CTYRAG	1 cut(s)	1138
Sse9I	AATT	7 cut(s)	127, 343, 832, 1018, 1099, 1115, 1126
SsiI	CCGC	2 cut(s)	220, 306
SspMI	CTAG	1 cut(s)	669
StyI	CCWWGG	2 cut(s)	316, 1188
TaaI	ACNGT	3 cut(s)	25, 101, 385
TaiI	ACGT	2 cut(s)	382, 702
TaqI	TCGA	2 cut(s)	522, 630
TasI	AATT	7 cut(s)	127, 343, 832, 1018, 1099, 1115, 1126
TatI	WGTACW	1 cut(s)	1155
TfiI	GAWTC	4 cut(s)	597, 613, 627, 785
Tru1I	TTAA	3 cut(s)	362, 456, 552
Tru9I	TTAA	3 cut(s)	362, 456, 552
TscAI	CASTG	2 cut(s)	100, 799
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	3 cut(s)	184, 267, 665
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	4 cut(s)	354, 377, 845, 1080
TspGWI	ACGGA	1 cut(s)	931
TspRI	CASTG	2 cut(s)	100, 799
XapI	RAATTY	3 cut(s)	343, 1018, 1115
XceI	RCATGY	2 cut(s)	284, 1162
XcmI	CCANNNNNNNNNTGG	2 cut(s)	230, 1170
XspI	CTAG	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.