Rorug05G0057700

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003266
Physical Location & Seq
Reverse (-)
5053842 .. 5054879
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0057700.1

Sequence Viewer

Length: 1038 bp
ATGGCAACACCAAAATGGGCATGCATGGCTCTTTTGCTATTTCTTAGCTTGGGAGTTGGCTCTGCTGGTAGAGCCAAAGTGGTTGATAAACCAGAAAAGTTTGTCTTGGGTGGACATATTGGTTTGAAACCAGGCTTCCACATTGGAGGTATTATTGAGGGGGCACTCGGCCACAATGACAAGAGTCCCCAGAGTCCCCCCACCCCACCACCCAGCCCAAGTGACACCTCTGTCGCCGGAGCCAGAGGTGATGGTTATGGTGGAGGCCGAGGCGGCGGCTATGGAAGCGGCCAAGTAGGCGGCATTATTGGGGGAGGAGGAGGTGGAGGCGGTAGTGTTGGTGGTGGTGGAGGCGGCTTTGGTAGAGGTAAAGGCGGCGGATGGGGTGGTGGAGGAGGTGGCGGTGGCGGCCGAGAAGGTGGTGATGATTGCGGGGACCAAAGTGGCGGTGATGACGGAGACCAAGGCGGCAGCCCAAGCATTGTCGTCCCAGGTTTTACCATTCCTGGCTTTGACATTGGTGGTGTTATCGGCGGTGGAATTAGTACTGGATCTTCTGGTCTATACTGCACACCAATTAATTGCCGTGGTAATGACTGCAAAGGAGTTCATTTGTACTTCGATAACTCTAATGCTCCCAATATGTCCCCCATTTTGGCGCCAGAGACCCTGGCGGGAAGCAACGGTCAAAAACAAAATATGAACCATGAAGTGGAGGATAAACACAGTATGGATACCCTGGCTTCAGAACCAAGCACTAGCCTAGACACGAAACCAAGGTCACCAGACCCAAAGGATGACAGTGCAGCCCCAATCTATGTCCCTGTACCAGTCTCAGACCCAAACAATGCCCTGTCATCACGGGGGAGACCTCGGCCACCAATCGATCCTCCGACACCACCAAGCAACACCCTGGCACCAGAACCAAGCGATGCCCCGGAACTGGAACCAAGCTATGATTCCGTGGTCCCAAAACCAAGTGAGGACCTGGAAGAGGAACTAAGCGTGGTTCCAAAACCAGCACCAGGATTAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

345

Amino Acids

33.99

Weight (kDa)

4.77

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AccB1I GGYRCC 2 cut(s) 658, 916
AccB7I CCANNNNNTGG 1 cut(s) 712
AclWI GGATC 2 cut(s) 559, 881
AcoI YGGCCR 4 cut(s) 169, 289, 409, 875
AcuI CTGAAG 1 cut(s) 729
AcyI GRCGYC 1 cut(s) 659
AfaI GTAC 3 cut(s) 547, 617, 828
AfiI CCNNNNNNNGG 6 cut(s) 655, 712, 943, 994, 1025, 1031
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 8 cut(s) 130, 490, 505, 669, 738, 912, 987, 1024
AjuI GAANNNNNNNTTGG 2 cut(s) 943, 975
AluBI AGCT 2 cut(s) 48, 954
AluI AGCT 2 cut(s) 48, 954
Alw26I GTCTC 4 cut(s) 453, 659, 838, 862
AlwI GGATC 2 cut(s) 559, 881
AoxI GGCC 5 cut(s) 169, 265, 289, 409, 875
ApeKI GCWGC 2 cut(s) 471, 806
ArsI GACNNNNNNTTYG 2 cut(s) 764, 796
AseI ATTAAT 1 cut(s) 579
AspLEI GCGC 1 cut(s) 661
AspS9I GGNCC 3 cut(s) 436, 967, 985
AsuC2I CCSGG 1 cut(s) 938
AsuHPI GGTGA 4 cut(s) 260, 434, 461, 774
AvaII GGWCC 3 cut(s) 436, 967, 985
BaeGI GKGCMC 1 cut(s) 166
BanI GGYRCC 2 cut(s) 658, 916
BarI GAAGNNNNNNTAC 2 cut(s) 538, 570
BbvI GCAGC 2 cut(s) 483, 818
BccI CCATC 2 cut(s) 245, 375
BceAI ACGGC 1 cut(s) 570
BciT130I CCWGG 8 cut(s) 132, 492, 507, 671, 740, 914, 989, 1026
BciVI GTATCC 1 cut(s) 727
BcnI CCSGG 1 cut(s) 938
BcoDI GTCTC 4 cut(s) 453, 659, 838, 862
BfaI CTAG 3 cut(s) 759, 764, 1036
BfoI RGCGCY 1 cut(s) 662
BfuI GTATCC 1 cut(s) 727
BglI GCCNNNNNGGC 2 cut(s) 273, 297
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 9 cut(s) 132, 492, 507, 671, 740, 914, 938, 989, 1026
Bme18I GGWCC 3 cut(s) 436, 967, 985
BmgT120I GGNCC 3 cut(s) 436, 967, 985
BmiI GGNNCC 7 cut(s) 241, 437, 660, 918, 948, 969, 1011
BmrFI CCNGG 9 cut(s) 132, 492, 507, 671, 740, 914, 938, 989, 1026
BmsI GCATC 1 cut(s) 922
BoxI GACNNNNGTC 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 938
Bsa29I ATCGAT 1 cut(s) 885
BsaHI GRCGYC 1 cut(s) 659
BsaI GGTCTC 3 cut(s) 453, 659, 862
Bsc4I CCNNNNNNNGG 6 cut(s) 655, 712, 943, 994, 1025, 1031
Bse1I ACTGG 3 cut(s) 553, 830, 948
BseBI CCWGG 8 cut(s) 132, 492, 507, 671, 740, 914, 989, 1026
BseCI ATCGAT 1 cut(s) 885
BseGI GGATG 2 cut(s) 386, 802
BseLI CCNNNNNNNGG 6 cut(s) 655, 712, 943, 994, 1025, 1031
BseMII CTCAG 1 cut(s) 849
BseNI ACTGG 3 cut(s) 553, 830, 948
BseRI GAGGAG 3 cut(s) 330, 333, 408
BseSI GKGCMC 1 cut(s) 166
BseX3I CGGCCG 1 cut(s) 409
BseXI GCAGC 2 cut(s) 483, 818
BseYI CCCAGC 1 cut(s) 212
BsgI GTGCAG 2 cut(s) 553, 825
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 5 cut(s) 171, 267, 291, 411, 877
BshNI GGYRCC 2 cut(s) 658, 916
BshVI ATCGAT 1 cut(s) 885
BsiEI CGRYCG 1 cut(s) 412
BsiSI CCGG 2 cut(s) 237, 938
BslFI GGGAC 7 cut(s) 171, 180, 449, 473, 631, 806, 953
BslI CCNNNNNNNGG 6 cut(s) 655, 712, 943, 994, 1025, 1031
BsmAI GTCTC 4 cut(s) 453, 659, 838, 862
BsmFI GGGAC 7 cut(s) 171, 180, 449, 473, 631, 806, 953
BsnI GGCC 5 cut(s) 171, 267, 291, 411, 877
Bso31I GGTCTC 3 cut(s) 453, 659, 862
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 551, 886
BspANI GGCC 5 cut(s) 171, 267, 291, 411, 877
BspCNI CTCAG 1 cut(s) 848
BspDI ATCGAT 1 cut(s) 885
BspLI GGNNCC 7 cut(s) 241, 437, 660, 918, 948, 969, 1011
BspPI GGATC 2 cut(s) 559, 881
BspT107I GGYRCC 2 cut(s) 658, 916
BspTNI GGTCTC 3 cut(s) 453, 659, 862
BsrI ACTGG 3 cut(s) 553, 830, 948
BssMI GATC 2 cut(s) 551, 886
BssNI GRCGYC 1 cut(s) 659
BssT1I CCWWGG 2 cut(s) 463, 776
Bst2UI CCWGG 8 cut(s) 132, 492, 507, 671, 740, 914, 989, 1026
Bst4CI ACNGT 3 cut(s) 686, 728, 803
Bst6I CTCTTC 1 cut(s) 987
BstACI GRCGYC 1 cut(s) 659
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 44, 835, 1001
BstDSI CCRYGG 2 cut(s) 586, 963
BstEII GGTNACC 1 cut(s) 780
BstENI CCTNNNNNAGG 1 cut(s) 992
BstF5I GGATG 2 cut(s) 386, 802
BstH2I RGCGCY 1 cut(s) 662
BstHHI GCGC 1 cut(s) 661
BstKTI GATC 2 cut(s) 554, 889
BstMAI GTCTC 4 cut(s) 453, 659, 838, 862
BstMBI GATC 2 cut(s) 551, 886
BstMCI CGRYCG 1 cut(s) 412
BstMWI GCNNNNNNNGC 7 cut(s) 26, 71, 273, 285, 297, 408, 477
BstNI CCWGG 8 cut(s) 132, 492, 507, 671, 740, 914, 989, 1026
BstNSI RCATGY 1 cut(s) 24
BstPAI GACNNNNGTC 1 cut(s) 183
BstPI GGTNACC 1 cut(s) 780
BstSCI CCNGG 9 cut(s) 130, 490, 505, 669, 738, 912, 936, 987, 1024
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 483, 818
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BstZI CGGCCG 1 cut(s) 409
Bsu15I ATCGAT 1 cut(s) 885
BsuI GTATCC 1 cut(s) 727
BsuRI GGCC 5 cut(s) 171, 267, 291, 411, 877
BsuTUI ATCGAT 1 cut(s) 885
BtgI CCRYGG 2 cut(s) 586, 963
BtgZI GCGATG 1 cut(s) 945
BtsCI GGATG 2 cut(s) 386, 802
BtsIMutI CAGTG 1 cut(s) 808
Cac8I GCNNGC 1 cut(s) 22
CfoI GCGC 1 cut(s) 661
Cfr13I GGNCC 3 cut(s) 436, 967, 985
ClaI ATCGAT 1 cut(s) 885
Csp6I GTAC 3 cut(s) 546, 616, 827
CviAII CATG 3 cut(s) 21, 25, 707
CviQI GTAC 3 cut(s) 546, 616, 827
DdeI CTNAG 3 cut(s) 44, 835, 1001
DinI GGCGCC 1 cut(s) 660
DpnI GATC 2 cut(s) 553, 888
DpnII GATC 2 cut(s) 551, 886
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
EaeI YGGCCR 4 cut(s) 169, 289, 409, 875
EagI CGGCCG 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 987
EarI CTCTTC 1 cut(s) 987
EciI GGCGGA 1 cut(s) 393
EclXI CGGCCG 1 cut(s) 409
Eco130I CCWWGG 2 cut(s) 463, 776
Eco31I GGTCTC 3 cut(s) 453, 659, 862
Eco47I GGWCC 3 cut(s) 436, 967, 985
Eco52I CGGCCG 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 729
Eco91I GGTNACC 1 cut(s) 780
EcoNI CCTNNNNNAGG 1 cut(s) 992
EcoO109I RGGNCCY 1 cut(s) 985
EcoO65I GGTNACC 1 cut(s) 780
EcoRII CCWGG 8 cut(s) 130, 490, 505, 669, 738, 912, 987, 1024
EcoT14I CCWWGG 2 cut(s) 463, 776
EcoT22I ATGCAT 1 cut(s) 26
EgeI GGCGCC 1 cut(s) 660
EheI GGCGCC 1 cut(s) 660
ErhI CCWWGG 2 cut(s) 463, 776
FaeI CATG 3 cut(s) 24, 28, 710
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FaqI GGGAC 7 cut(s) 171, 180, 449, 473, 631, 806, 953
FatI CATG 3 cut(s) 20, 24, 706
FauI CCCGC 2 cut(s) 425, 667
FokI GGATG 2 cut(s) 393, 809
FspBI CTAG 3 cut(s) 759, 764, 1036
GlaI GCGC 1 cut(s) 660
GsaI CCCAGC 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 662
HaeIII GGCC 5 cut(s) 171, 267, 291, 411, 877
HapII CCGG 2 cut(s) 237, 938
HhaI GCGC 1 cut(s) 661
Hin1I GRCGYC 1 cut(s) 659
Hin1II CATG 3 cut(s) 24, 28, 710
Hin6I GCGC 1 cut(s) 659
HinP1I GCGC 1 cut(s) 659
HinfI GANTC 3 cut(s) 184, 193, 959
HpaII CCGG 2 cut(s) 237, 938
HphI GGTGA 4 cut(s) 260, 434, 461, 774
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 3 cut(s) 748, 838, 894
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 3 cut(s) 686, 728, 803
HpyCH4V TGCA 4 cut(s) 24, 570, 600, 806
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 71, 273, 285, 297, 408, 477
HpyF3I CTNAG 3 cut(s) 44, 835, 1001
Hsp92I GRCGYC 1 cut(s) 659
Hsp92II CATG 3 cut(s) 24, 28, 710
HspAI GCGC 1 cut(s) 659
KasI GGCGCC 1 cut(s) 658
Kzo9I GATC 2 cut(s) 551, 886
LmnI GCTCC 2 cut(s) 239, 640
Lsp1109I GCAGC 2 cut(s) 483, 818
LweI GCATC 1 cut(s) 922
MaeI CTAG 3 cut(s) 759, 764, 1036
MaeIII GTNAC 2 cut(s) 221, 780
MalI GATC 2 cut(s) 553, 888
MboI GATC 2 cut(s) 551, 886
MboII GAAGA 2 cut(s) 546, 1004
MflI RGATCY 1 cut(s) 551
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 3 cut(s) 540, 576, 580
Mly113I GGCGCC 1 cut(s) 659
MlyI GAGTC 2 cut(s) 193, 202
MmeI TCCRAC 1 cut(s) 917
Mph1103I ATGCAT 1 cut(s) 26
MseI TTAA 1 cut(s) 579
MslI CAYNNNNRTG 1 cut(s) 13
MspI CCGG 2 cut(s) 237, 938
MspR9I CCNGG 9 cut(s) 132, 492, 507, 671, 740, 914, 938, 989, 1026
MvaI CCWGG 8 cut(s) 132, 492, 507, 671, 740, 914, 989, 1026
MwoI GCNNNNNNNGC 7 cut(s) 26, 71, 273, 285, 297, 408, 477
NarI GGCGCC 1 cut(s) 659
NciI CCSGG 1 cut(s) 938
NdeII GATC 2 cut(s) 551, 886
NlaIII CATG 3 cut(s) 24, 28, 710
NlaIV GGNNCC 7 cut(s) 241, 437, 660, 918, 948, 969, 1011
NmeAIII GCCGAG 4 cut(s) 147, 293, 437, 853
NmuCI GTSAC 2 cut(s) 221, 780
NsiI ATGCAT 1 cut(s) 26
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 959
PflMI CCANNNNNTGG 1 cut(s) 712
PleI GAGTC 2 cut(s) 192, 201
PluTI GGCGCC 1 cut(s) 662
PpsI GAGTC 2 cut(s) 192, 201
PpuMI RGGWCCY 1 cut(s) 985
PshAI GACNNNNGTC 1 cut(s) 183
PshBI ATTAAT 1 cut(s) 579
Psp5II RGGWCCY 1 cut(s) 985
Psp6I CCWGG 8 cut(s) 130, 490, 505, 669, 738, 912, 987, 1024
PspEI GGTNACC 1 cut(s) 780
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 8 cut(s) 130, 490, 505, 669, 738, 912, 987, 1024
PspN4I GGNNCC 7 cut(s) 241, 437, 660, 918, 948, 969, 1011
PspPI GGNCC 3 cut(s) 436, 967, 985
PspPPI RGGWCCY 1 cut(s) 985
PsuI RGATCY 1 cut(s) 551
RsaI GTAC 3 cut(s) 547, 617, 828
RsaNI GTAC 3 cut(s) 546, 616, 827
RseI CAYNNNNRTG 1 cut(s) 13
SaqAI TTAA 1 cut(s) 579
Sau3AI GATC 2 cut(s) 551, 886
Sau96I GGNCC 3 cut(s) 436, 967, 985
ScaI AGTACT 1 cut(s) 547
SchI GAGTC 2 cut(s) 193, 202
ScrFI CCNGG 9 cut(s) 132, 492, 507, 671, 740, 914, 938, 989, 1026
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 1 cut(s) 922
SfoI GGCGCC 1 cut(s) 660
SinI GGWCC 3 cut(s) 436, 967, 985
SmiMI CAYNNNNRTG 1 cut(s) 13
SphI GCATGC 1 cut(s) 24
Sse9I AATT 3 cut(s) 540, 576, 580
SspDI GGCGCC 1 cut(s) 658
SspMI CTAG 3 cut(s) 759, 764, 1036
StyD4I CCNGG 9 cut(s) 130, 490, 505, 669, 738, 912, 936, 987, 1024
StyI CCWWGG 2 cut(s) 463, 776
TaaI ACNGT 3 cut(s) 686, 728, 803
TaqI TCGA 2 cut(s) 621, 885
TasI AATT 3 cut(s) 540, 576, 580
TatI WGTACW 2 cut(s) 545, 615
TauI GCSGC 8 cut(s) 276, 279, 291, 303, 357, 378, 411, 471
TfiI GAWTC 1 cut(s) 959
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TscAI CASTG 1 cut(s) 808
TseFI GTSAC 2 cut(s) 221, 780
TseI GCWGC 2 cut(s) 471, 806
Tsp45I GTSAC 2 cut(s) 221, 780
TspDTI ATGAA 3 cut(s) 599, 716, 723
TspGWI ACGGA 2 cut(s) 471, 952
TspRI CASTG 1 cut(s) 808
Van91I CCANNNNNTGG 1 cut(s) 712
VpaK11BI GGWCC 3 cut(s) 436, 967, 985
VspI ATTAAT 1 cut(s) 579
XagI CCTNNNNNAGG 1 cut(s) 992
XceI RCATGY 1 cut(s) 24
XspI CTAG 3 cut(s) 759, 764, 1036
ZrmI AGTACT 1 cut(s) 547
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.