RLG00000032508

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003266
Physical Location & Seq
Reverse (-)
15932569 .. 15934338
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032508

Sequence Viewer

Length: 537 bp
ATGATTACCAAAAAACCAAAAACAAGGACAGTGGAAGAGGCAATATCAACCTTGGAAGGTTCAGGTTGGGCATGGCTTCCAAGGGACATTCTGGATTTGATTCTTGAAAGGTTGATACAAATCAAAGACTATATCCGATTTGGTGTGGATTGTGGTTCTTCTCATGGTTGGTTGGCTTATGCGAATGCCAATATGGAGGTAACCCTCTTAAACCCTTTCACCGGATGCACAATTACCCTTCCACCAGTACGCACAACACATGGCCATTACATCAAGAAGGATAATAGAACATACCTTGTGGAATCGTCCAAGGGAGATCTACTGCTGGTTAGGAAGGTACCAGTGTATCCGCACGTCAAGTTATTTGCTTTTATAGGCACAGGAGTGAAGAGTCGAGGACAGTACTGCTTGGAGAGTGAAAAGCTAGAAGAGGAGCAAGTGACAGTCTCAGCAGGGTGTCTTCATCATTGTCAGATGGGATTCACACAACTTCGTTGGATGCCAGCGGGAATGCCTGATCTCACCTCTCTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

179

Amino Acids

20.04

Weight (kDa)

8.26

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 51 - 87 1.1e-07 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 337
AccB1I GGYRCC 1 cut(s) 337
AciI CCGC 2 cut(s) 350, 506
AcoI YGGCCR 1 cut(s) 262
AfaI GTAC 3 cut(s) 249, 339, 404
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 107
AjiI CACGTC 1 cut(s) 355
AleI CACNNNNGTG 1 cut(s) 383
AluBI AGCT 1 cut(s) 424
AluI AGCT 1 cut(s) 424
Alw26I GTCTC 1 cut(s) 451
AoxI GGCC 1 cut(s) 262
Asp718I GGTACC 1 cut(s) 337
AsuHPI GGTGA 2 cut(s) 211, 514
BaeI ACNNNNGTAYC 4 cut(s) 329, 329, 362, 362
BalI TGGCCA 1 cut(s) 264
BanI GGYRCC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 452
BccI CCATC 1 cut(s) 469
BciVI GTATCC 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 451
BfaI CTAG 2 cut(s) 425, 530
BfuI GTATCC 1 cut(s) 357
BglII AGATCT 1 cut(s) 316
BmcAI AGTACT 1 cut(s) 404
BmgBI CACGTC 1 cut(s) 355
BmiI GGNNCC 1 cut(s) 339
BmsI GCATC 2 cut(s) 215, 489
BpiI GAAGAC 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 119
BsaJI CCNNGG 3 cut(s) 51, 80, 309
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 2 cut(s) 245, 341
Bse8I GATNNNNATC 1 cut(s) 119
BseDI CCNNGG 3 cut(s) 51, 80, 309
BseGI GGATG 2 cut(s) 230, 504
BseJI GATNNNNATC 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 2 cut(s) 245, 341
BseRI GAGGAG 1 cut(s) 446
BshFI GGCC 1 cut(s) 264
BshNI GGYRCC 1 cut(s) 337
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 451
BsmFI GGGAC 1 cut(s) 98
BsmI GAATGC 2 cut(s) 190, 516
BsnI GGCC 1 cut(s) 264
Bsp143I GATC 2 cut(s) 316, 517
BspACI CCGC 2 cut(s) 350, 506
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 1 cut(s) 461
BspLI GGNNCC 1 cut(s) 339
BspT107I GGYRCC 1 cut(s) 337
BsrI ACTGG 2 cut(s) 245, 341
BssECI CCNNGG 3 cut(s) 51, 80, 309
BssMI GATC 2 cut(s) 316, 517
BssT1I CCWWGG 3 cut(s) 51, 80, 309
Bst4CI ACNGT 3 cut(s) 31, 402, 445
Bst6I CTCTTC 3 cut(s) 30, 383, 423
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 1 cut(s) 448
BstEII GGTNACC 1 cut(s) 199
BstF5I GGATG 2 cut(s) 230, 504
BstKTI GATC 2 cut(s) 319, 520
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 2 cut(s) 316, 517
BstPI GGTNACC 1 cut(s) 199
BstV2I GAAGAC 1 cut(s) 452
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuI GTATCC 1 cut(s) 357
BsuRI GGCC 1 cut(s) 264
BtrI CACGTC 1 cut(s) 355
BtsCI GGATG 2 cut(s) 230, 504
BtsIMutI CAGTG 2 cut(s) 36, 348
Cac8I GCNNGC 1 cut(s) 504
Csp6I GTAC 3 cut(s) 248, 338, 403
CspCI CAANNNNNGTGG 2 cut(s) 12, 47
CviAII CATG 3 cut(s) 72, 164, 260
CviJI RGCY 4 cut(s) 76, 176, 264, 424
CviKI_1 RGCY 4 cut(s) 76, 176, 264, 424
CviQI GTAC 3 cut(s) 248, 338, 403
DdeI CTNAG 1 cut(s) 448
DpnI GATC 2 cut(s) 318, 519
DpnII GATC 2 cut(s) 316, 517
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 3 cut(s) 30, 383, 423
EarI CTCTTC 3 cut(s) 30, 383, 423
Eco130I CCWWGG 3 cut(s) 51, 80, 309
Eco91I GGTNACC 1 cut(s) 199
EcoO65I GGTNACC 1 cut(s) 199
EcoT14I CCWWGG 3 cut(s) 51, 80, 309
ErhI CCWWGG 3 cut(s) 51, 80, 309
FaeI CATG 3 cut(s) 75, 167, 263
FaiI YATR 8 cut(s) 73, 132, 165, 180, 194, 261, 292, 374
FaqI GGGAC 1 cut(s) 98
FatI CATG 3 cut(s) 71, 163, 259
FauI CCCGC 1 cut(s) 499
FokI GGATG 2 cut(s) 237, 511
FspBI CTAG 2 cut(s) 425, 530
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 222
Hin1II CATG 3 cut(s) 75, 167, 263
HinfI GANTC 4 cut(s) 100, 302, 391, 480
HpaII CCGG 1 cut(s) 222
HphI GGTGA 2 cut(s) 211, 514
Hpy188I TCNGA 2 cut(s) 137, 474
Hpy188III TCNNGA 3 cut(s) 92, 104, 274
HpyAV CCTTC 4 cut(s) 50, 248, 271, 328
HpyCH4III ACNGT 3 cut(s) 31, 402, 445
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 448
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 3 cut(s) 75, 167, 263
KpnI GGTACC 1 cut(s) 341
Kzo9I GATC 2 cut(s) 316, 517
LmnI GCTCC 1 cut(s) 433
LweI GCATC 2 cut(s) 215, 489
MaeI CTAG 2 cut(s) 425, 530
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 2 cut(s) 199, 439
MalI GATC 2 cut(s) 318, 519
MboI GATC 2 cut(s) 316, 517
MboII GAAGA 5 cut(s) 47, 150, 400, 440, 452
MflI RGATCY 1 cut(s) 316
MlsI TGGCCA 1 cut(s) 264
MluCI AATT 1 cut(s) 231
MluNI TGGCCA 1 cut(s) 264
MlyI GAGTC 1 cut(s) 400
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 6 cut(s) 31, 190, 215, 389, 424, 535
Mox20I TGGCCA 1 cut(s) 264
MscI TGGCCA 1 cut(s) 264
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 1 cut(s) 222
Mva1269I GAATGC 2 cut(s) 190, 516
NdeII GATC 2 cut(s) 316, 517
NlaIII CATG 3 cut(s) 75, 167, 263
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 439
OliI CACNNNNGTG 1 cut(s) 383
PctI GAATGC 2 cut(s) 190, 516
PfeI GAWTC 3 cut(s) 100, 302, 480
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
PspEI GGTNACC 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 339
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 3 cut(s) 249, 339, 404
RsaNI GTAC 3 cut(s) 248, 338, 403
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 1 cut(s) 209
Sau3AI GATC 2 cut(s) 316, 517
ScaI AGTACT 1 cut(s) 404
SchI GAGTC 1 cut(s) 400
SfaNI GCATC 2 cut(s) 215, 489
SmiMI CAYNNNNRTG 1 cut(s) 383
Sse9I AATT 1 cut(s) 231
SsiI CCGC 2 cut(s) 350, 506
SspMI CTAG 2 cut(s) 425, 530
StyI CCWWGG 3 cut(s) 51, 80, 309
TaaI ACNGT 3 cut(s) 31, 402, 445
TaiI ACGT 1 cut(s) 357
TaqI TCGA 1 cut(s) 394
TasI AATT 1 cut(s) 231
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 3 cut(s) 100, 302, 480
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 2 cut(s) 36, 348
TseFI GTSAC 1 cut(s) 439
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 1 cut(s) 452
TspRI CASTG 2 cut(s) 36, 348
XspI CTAG 2 cut(s) 425, 530
ZrmI AGTACT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.