Rroxscaffold_1G00058000

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003266
Physical Location & Seq
Forward (+)
79947133 .. 79948215
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058000.1

Sequence Viewer

Length: 1083 bp
ATGGGGAAGAATGGAACTAAAAGACAAAAAAAATTTCTTCACGGTTGGGTTTCGTTTCCAAGTGAGCTTCTTGATTCGATACTCGAAAGATTGGCATCCATCTTCGACTACATCCAGTTCAGTTTCGTTTGCAAGCATTGGCGAAGGGTTGCCTTAAATCAGAAGGAGCAGCGCCTCAAATCTTGTCACAAACAGCTAATTCCTTTGTTGCTGTTGATTCCAACCAAGAACAGCAACCAAAGACGTGTCTTGTACAGTGTCACACAAGGTAAGGTTGTTCGTAGCTTTAATGTCCATAATCATCATGACGACGATAAGTGGTTGTGTGGTTCTTCCCATGGTTGGTTGGCTTATGCCGACGGCAATTTCCTAGTAACCCTAGTAAACCCTTTCACCAGAGGCACCATTAGGCTTCCACAAGTCATGGAAGTTGGGAAGTCCAGACCTAAATGCTACTCGTTTGAGATTAGTAAAGTTGTTTTGTCTGCTAACCCTTGTTTGTTTCCTAATGATTATGAAGTTCTTGTTATCTTTGAGGATGATGATGGGGTTACCAAGGAACTAGCCCATTTTAAGTCCGGGGACGATGACTGGACTCGCTTCGATAATCAAATGATCCATGGACTTGATATCCTTGATGTAATTTATTACAAAGGCCGGTTTGTAGCTCTAACTAGTTTGGATTCTGATCCCGGCCATGATGCTAGTAAGTTTCATCCAAGCATAGGGTTCCTATCACCCCCACCAGAAGCTTGTAATAAGTCAACATATCTTGTCAAATCGACCTGGGAGGATCTTTTGCTCGTAAATATAACTAATTTTTCCAGCATCAAGATTTTCAAGCTGGGTAGTTCGTGTGGCGAATGGGTAAAGATAGAGAGTATTGGAACTGATGCTTTGTTTCTGGATAACATGCAATCCATGTGTGTTTCTGCTTCATACTCGGGGTGTCATCCAAATTCGATATACTTCATGGAATGCGTTGTCAACTTAAATACCAGAAAAGAGACCAGGCATGACGAGTTACCAGAGCGGACACGACCAATAACATGGATTGCACCCACTGTGGCATTTTCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

360

Amino Acids

41.08

Weight (kDa)

7.99

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 84 - 332 1.1e-41 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 401
AccBSI CCGCTC 1 cut(s) 1033
AciI CCGC 1 cut(s) 1033
AclWI GGATC 3 cut(s) 610, 683, 801
AcoI YGGCCR 1 cut(s) 694
AcsI RAATTY 2 cut(s) 32, 958
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 342, 725
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 1 cut(s) 841
AhlI ACTAGT 1 cut(s) 674
AjiI CACGTC 1 cut(s) 245
AjnI CCWGG 2 cut(s) 785, 1010
AluBI AGCT 6 cut(s) 67, 196, 285, 668, 752, 844
AluI AGCT 6 cut(s) 67, 196, 285, 668, 752, 844
Alw26I GTCTC 1 cut(s) 1001
AlwI GGATC 3 cut(s) 610, 683, 801
Ama87I CYCGRG 1 cut(s) 943
AoxI GGCC 2 cut(s) 655, 694
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 2 cut(s) 32, 958
AspLEI GCGC 1 cut(s) 174
AsuC2I CCSGG 2 cut(s) 580, 693
AsuHPI GGTGA 2 cut(s) 385, 729
AvaI CYCGRG 1 cut(s) 943
BanI GGYRCC 1 cut(s) 401
BbvI GCAGC 1 cut(s) 181
BccI CCATC 2 cut(s) 107, 539
BceAI ACGGC 1 cut(s) 376
BciT130I CCWGG 2 cut(s) 787, 1012
BcnI CCSGG 2 cut(s) 580, 693
BcoDI GTCTC 1 cut(s) 1001
BcuI ACTAGT 1 cut(s) 674
BfaI CTAG 5 cut(s) 371, 380, 563, 675, 705
BfoI RGCGCY 1 cut(s) 175
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 4 cut(s) 580, 693, 787, 1012
BmeT110I CYCGRG 1 cut(s) 943
BmgBI CACGTC 1 cut(s) 245
BmiI GGNNCC 2 cut(s) 403, 731
BmrFI CCNGG 4 cut(s) 580, 693, 787, 1012
BmsI GCATC 4 cut(s) 104, 691, 837, 883
BpuMI CCSGG 2 cut(s) 580, 693
BsaBI GATNNNNATC 2 cut(s) 94, 687
BsaI GGTCTC 1 cut(s) 1001
BsaJI CCNNGG 5 cut(s) 337, 555, 579, 619, 786
Bsc4I CCNNNNNNNGG 2 cut(s) 342, 725
Bse118I RCCGGY 1 cut(s) 657
Bse1I ACTGG 2 cut(s) 115, 596
Bse8I GATNNNNATC 2 cut(s) 94, 687
BseBI CCWGG 2 cut(s) 787, 1012
BseDI CCNNGG 5 cut(s) 337, 555, 579, 619, 786
BseGI GGATG 5 cut(s) 95, 111, 544, 715, 952
BseJI GATNNNNATC 2 cut(s) 94, 687
BseLI CCNNNNNNNGG 2 cut(s) 342, 725
BseNI ACTGG 2 cut(s) 115, 596
BseXI GCAGC 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 844
BshFI GGCC 2 cut(s) 657, 696
BshNI GGYRCC 1 cut(s) 401
BsiHKCI CYCGRG 1 cut(s) 943
BsiSI CCGG 3 cut(s) 579, 658, 693
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 2 cut(s) 342, 725
BsmAI GTCTC 1 cut(s) 1001
BsmFI GGGAC 1 cut(s) 596
BsmI GAATGC 1 cut(s) 983
BsnI GGCC 2 cut(s) 657, 696
Bso31I GGTCTC 1 cut(s) 1001
BsoBI CYCGRG 1 cut(s) 943
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 3 cut(s) 615, 688, 793
Bsp19I CCATGG 2 cut(s) 337, 619
BspACI CCGC 1 cut(s) 1033
BspANI GGCC 2 cut(s) 657, 696
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 403, 731
BspPI GGATC 3 cut(s) 610, 683, 801
BspT107I GGYRCC 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 1001
BsrBI CCGCTC 1 cut(s) 1033
BsrFI RCCGGY 1 cut(s) 657
BsrGI TGTACA 1 cut(s) 252
BsrI ACTGG 2 cut(s) 115, 596
BssAI RCCGGY 1 cut(s) 657
BssECI CCNNGG 5 cut(s) 337, 555, 579, 619, 786
BssMI GATC 3 cut(s) 615, 688, 793
BssT1I CCWWGG 3 cut(s) 337, 555, 619
Bst2UI CCWGG 2 cut(s) 787, 1012
Bst4CI ACNGT 3 cut(s) 44, 257, 1066
BstAUI TGTACA 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 134
BstDSI CCRYGG 2 cut(s) 337, 619
BstEII GGTNACC 1 cut(s) 550
BstF5I GGATG 5 cut(s) 95, 111, 544, 715, 952
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 3 cut(s) 618, 691, 796
BstMAI GTCTC 1 cut(s) 1001
BstMBI GATC 3 cut(s) 615, 688, 793
BstNI CCWGG 2 cut(s) 787, 1012
BstNSI RCATGY 1 cut(s) 916
BstPI GGTNACC 1 cut(s) 550
BstSCI CCNGG 4 cut(s) 578, 691, 785, 1010
BstV1I GCAGC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 793
BstXI CCANNNNNNTGG 1 cut(s) 1050
BstYI RGATCY 1 cut(s) 793
BsuRI GGCC 2 cut(s) 657, 696
BtgI CCRYGG 2 cut(s) 337, 619
BtrI CACGTC 1 cut(s) 245
BtsCI GGATG 5 cut(s) 95, 111, 544, 715, 952
BtsIMutI CAGTG 2 cut(s) 262, 1062
Cac8I GCNNGC 1 cut(s) 134
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 174
Cfr10I RCCGGY 1 cut(s) 657
Csp6I GTAC 1 cut(s) 253
CviQI GTAC 1 cut(s) 253
DpnI GATC 3 cut(s) 617, 690, 795
DpnII GATC 3 cut(s) 615, 688, 793
EaeI YGGCCR 1 cut(s) 694
Eco130I CCWWGG 3 cut(s) 337, 555, 619
Eco31I GGTCTC 1 cut(s) 1001
Eco32I GATATC 1 cut(s) 631
Eco88I CYCGRG 1 cut(s) 943
Eco91I GGTNACC 1 cut(s) 550
EcoO65I GGTNACC 1 cut(s) 550
EcoRII CCWGG 2 cut(s) 785, 1010
EcoRV GATATC 1 cut(s) 631
EcoT14I CCWWGG 3 cut(s) 337, 555, 619
ErhI CCWWGG 3 cut(s) 337, 555, 619
FaqI GGGAC 1 cut(s) 596
FauNDI CATATG 1 cut(s) 1079
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 5 cut(s) 82, 98, 551, 702, 939
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 5 cut(s) 371, 380, 563, 675, 705
GlaI GCGC 1 cut(s) 173
GluI GCNGC 1 cut(s) 170
GsaI CCCAGC 1 cut(s) 848
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 2 cut(s) 657, 696
HapII CCGG 3 cut(s) 579, 658, 693
HhaI GCGC 1 cut(s) 174
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 2 cut(s) 765, 988
HindII GTYRAC 2 cut(s) 765, 988
HindIII AAGCTT 1 cut(s) 750
HinfI GANTC 4 cut(s) 74, 217, 595, 683
HpaII CCGG 3 cut(s) 579, 658, 693
HphI GGTGA 2 cut(s) 385, 729
Hpy166II GTNNAC 3 cut(s) 385, 765, 988
Hpy188I TCNGA 2 cut(s) 162, 688
Hpy188III TCNNGA 5 cut(s) 71, 305, 441, 832, 905
Hpy8I GTNNAC 3 cut(s) 385, 765, 988
Hpy99I CGWCG 2 cut(s) 314, 362
HpyAV CCTTC 2 cut(s) 138, 157
HpyCH4III ACNGT 3 cut(s) 44, 257, 1066
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 3 cut(s) 132, 916, 1058
HpySE526I ACGT 1 cut(s) 244
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 3 cut(s) 615, 688, 793
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 4 cut(s) 104, 691, 837, 883
MaeI CTAG 5 cut(s) 371, 380, 563, 675, 705
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 5 cut(s) 185, 259, 373, 550, 1023
MalI GATC 3 cut(s) 617, 690, 795
MbiI CCGCTC 1 cut(s) 1033
MboI GATC 3 cut(s) 615, 688, 793
MboII GAAGA 4 cut(s) 19, 29, 94, 324
MflI RGATCY 1 cut(s) 793
MluCI AATT 6 cut(s) 32, 198, 364, 642, 817, 958
MlyI GAGTC 1 cut(s) 589
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 4 cut(s) 185, 392, 529, 784
MseI TTAA 4 cut(s) 155, 288, 573, 992
MspI CCGG 3 cut(s) 579, 658, 693
MspR9I CCNGG 4 cut(s) 580, 693, 787, 1012
Mva1269I GAATGC 1 cut(s) 983
MvaI CCWGG 2 cut(s) 787, 1012
NciI CCSGG 2 cut(s) 580, 693
NcoI CCATGG 2 cut(s) 337, 619
NdeI CATATG 1 cut(s) 1079
NdeII GATC 3 cut(s) 615, 688, 793
NlaIV GGNNCC 2 cut(s) 403, 731
NmuCI GTSAC 2 cut(s) 185, 259
NspI RCATGY 1 cut(s) 916
PagI TCATGA 1 cut(s) 304
PctI GAATGC 1 cut(s) 983
PfeI GAWTC 3 cut(s) 74, 217, 683
PkrI GCNGC 1 cut(s) 171
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
Psp6I CCWGG 2 cut(s) 785, 1010
PspEI GGTNACC 1 cut(s) 550
PspFI CCCAGC 1 cut(s) 844
PspGI CCWGG 2 cut(s) 785, 1010
PspN4I GGNNCC 2 cut(s) 403, 731
PsuI RGATCY 1 cut(s) 793
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SaqAI TTAA 4 cut(s) 155, 288, 573, 992
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 3 cut(s) 615, 688, 793
SchI GAGTC 1 cut(s) 589
ScrFI CCNGG 4 cut(s) 580, 693, 787, 1012
SfaNI GCATC 4 cut(s) 104, 691, 837, 883
SpeI ACTAGT 1 cut(s) 674
Sse9I AATT 6 cut(s) 32, 198, 364, 642, 817, 958
SsiI CCGC 1 cut(s) 1033
SspMI CTAG 5 cut(s) 371, 380, 563, 675, 705
StyD4I CCNGG 4 cut(s) 578, 691, 785, 1010
StyI CCWWGG 3 cut(s) 337, 555, 619
TaaI ACNGT 3 cut(s) 44, 257, 1066
TaiI ACGT 1 cut(s) 247
TaqI TCGA 6 cut(s) 77, 84, 105, 603, 782, 962
TasI AATT 6 cut(s) 32, 198, 364, 642, 817, 958
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 3 cut(s) 74, 217, 683
Tru1I TTAA 4 cut(s) 155, 288, 573, 992
Tru9I TTAA 4 cut(s) 155, 288, 573, 992
TscAI CASTG 2 cut(s) 262, 1069
TseFI GTSAC 2 cut(s) 185, 259
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 2 cut(s) 185, 259
TspDTI ATGAA 4 cut(s) 531, 704, 927, 961
TspRI CASTG 2 cut(s) 262, 1069
XapI RAATTY 2 cut(s) 32, 958
XceI RCATGY 1 cut(s) 916
XspI CTAG 5 cut(s) 371, 380, 563, 675, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.