Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003266

Physical Location & Seq

Genomic Coordinates Reverse (-)

15398809 .. 15400756

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G013090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGATTACCAAAAAACCAAAAACAAGGACAGTGGAAGAGGCAATATCAACCTTGGAAGGTTCAGGTTGGGCATGGCTTCCAAGGGACATTCTGGATTTGATTCTTGAAAGGTTGATACAGATCAAAGACTATATCCGGTTTGGTGTGGTTTGCAAGCATTGGCGATCAATTGCTCTACACCAAAATATGCAGCCGCGACTCGAATCATGTCACAAACTGCCTCCTCTAATGATTTTTATAAACCAACATGACAACGGTACAAGAAGTGTGGCCTTGCATAGTGGCACACAAGACAAGACTAGCAGGTTTAAGTTGAAATTGAATGGTTTCCCTATTTACGATTTGACCAAGGATTGTGGTTCTTCCCATGGTTGGTTGGCTTATGCGGATGCCAATTTGGAGGTAACCCTCTTAAACCCTTTCACCGGATGCACAATTACCCTTCCACCACCGAACATGATCACCTTAGTATTCGCTCCGACTCGGCTCATTTACACCCCTATTGTATTGTCTGCAGACCCTTCTTTGTGCCCTGATGACTTTGAAGCTCTGGTAATGTATATGCATTACTCTTGCACCAAACTGATCAAACTAGCCCATTTTAAGTCAGGGCAAGATGCTTGGACTCGCATAGATCATCCTAGAATGGAACTTTCTTATGCAATGTATTACAGAGGCAAGTTTCTAATTTGGAATGACCATTGTGAAATTTTTTCAGTTTATGATAGTAGCAAAGGAACGAAGGTACTCCTTGATTATAGATGGGTACTCCTTGCTTATAGATCTTTATATGTTCAGGATAGTAGAATATACCTTGTGGAATCGTCCAAGGGAGATCTATTGCTGATTATGAAGGGACCATCGTCTGAAGATCTGCACATCAACGTTTTCAAGTTGTTGAGTGATTTAAATAATGAATTCAAATGCTTAAAGATTGAGAGTATCGGATATGATGCTTTGTTTTTGGATCGTAACCAGTCTATCTGTGTCTCTGCTTTAGAATTTCCAGAGTGTCATCCAAATTCAATATACTTCGTCAACGGTACATTCAACTTGGAAAACCAAAAAATGCATTGGCGTTACCTCTCAATACCAACATTATCAGCAATATGGAGTTCACCAACTATATGCTTTGAAAATCGCCTTTACCAACAACAAATGAAGGTGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

390

Amino Acids

45.05

Weight (kDa)

7.94

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	26 - 60	8.3e-06	F-box-like
Beta-prop_KIB1-4	PF03478	98 - 347	2.1e-39	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12381
malus_domestica	MD05G1250900.v1.1 MD10G1231500.v1.1
prunus_persica	Prupe.6G183700_v2.0.a1 Prupe.6G184200_v2.0.a1 Prupe.6G184600_v2.0.a1 Prupe.8G064600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020191 RchiOBHm_Chr5g0020201
rosa_laevigata	RLG00000032508 RLG00000032510 RLG00000032511 RLG00000032585 RLG00000033606
rosa_multiflora	Rmu_sc0002087.1_g000011 Rmu_sc0002087.1_g000012 Rmu_ssc0000244.1_g000031
rosa_roxburghii	Rroxscaffold_1G00057970 Rroxscaffold_1G00058000 Rroxscaffold_1G00058010
rosa_rugosa	Rorug05G0057600 Rorug05G0057700 Rorug05G0057800
rosa_samantha	Rh5AG148000 Rh5AG148100 Rh5BG147600 Rh5BG147700 Rh5BG147800 Rh5CG159000 Rh5CG159100 Rh5CG274700 Rh5DG146800 Rh5DG146900 Rh5DG153600 Rh5DG252100
rosa_wichuraiana	Rw5G013090 Rw5G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	294
AccII	CGCG	1 cut(s)	196
AciI	CCGC	2 cut(s)	194, 386
AclI	AACGTT	1 cut(s)	885
AclWI	GGATC	1 cut(s)	975
AcsI	RAATTY	4 cut(s)	708, 917, 1001, 1021
AcuI	CTGAAG	1 cut(s)	888
AfaI	GTAC	4 cut(s)	259, 747, 768, 1045
AfiI	CCNNNNNNNGG	2 cut(s)	372, 425
AgsI	TTSAA	9 cut(s)	107, 316, 322, 545, 892, 922, 1026, 1051, 1136
AluBI	AGCT	1 cut(s)	548
AluI	AGCT	1 cut(s)	548
Alw26I	GTCTC	1 cut(s)	994
AlwI	GGATC	1 cut(s)	975
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	190
ApoI	RAATTY	4 cut(s)	708, 917, 1001, 1021
Asp700I	GAANNNNTTC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	857
AsuHPI	GGTGA	3 cut(s)	415, 454, 1110
AvaII	GGWCC	1 cut(s)	857
BaeGI	GKGCMC	1 cut(s)	533
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	756, 868
BclI	TGATCA	2 cut(s)	459, 585
BcoDI	GTCTC	1 cut(s)	994
BfaI	CTAG	3 cut(s)	300, 593, 642
BfmI	CTRYAG	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	294
BglII	AGATCT	3 cut(s)	782, 835, 871
BisI	GCNGC	2 cut(s)	191, 194
BlsI	GCNGC	2 cut(s)	192, 195
Bme18I	GGWCC	1 cut(s)	857
BmgT120I	GGNCC	1 cut(s)	857
BmiI	GGNNCC	1 cut(s)	858
BmsI	GCATC	4 cut(s)	379, 419, 607, 943
BoxI	GACNNNNGTC	1 cut(s)	862
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	5 cut(s)	51, 80, 348, 367, 828
BsaWI	WCCGGW	2 cut(s)	135, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 425
Bse1I	ACTGG	1 cut(s)	976
Bse3DI	GCAATG	1 cut(s)	669
Bse8I	GATNNNNATC	1 cut(s)	119
BseDI	CCNNGG	5 cut(s)	51, 80, 348, 367, 828
BseGI	GGATG	4 cut(s)	394, 434, 637, 1015
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	2 cut(s)	372, 425
BseMI	GCAATG	1 cut(s)	669
BseNI	ACTGG	1 cut(s)	976
BseRI	GAGGAG	1 cut(s)	213
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	860
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	136, 426
BslFI	GGGAC	2 cut(s)	98, 870
BslI	CCNNNNNNNGG	2 cut(s)	372, 425
BsmAI	GTCTC	1 cut(s)	994
BsmFI	GGGAC	2 cut(s)	98, 870
BsnI	GGCC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	9 cut(s)	120, 164, 459, 585, 634, 782, 835, 871, 967
Bsp19I	CCATGG	1 cut(s)	367
BspACI	CCGC	2 cut(s)	194, 386
BspANI	GGCC	1 cut(s)	272
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	858
BspMAI	CTGCAG	1 cut(s)	517
BspMI	ACCTGC	1 cut(s)	294
BspPI	GGATC	1 cut(s)	975
BsrDI	GCAATG	1 cut(s)	669
BsrI	ACTGG	1 cut(s)	976
BssECI	CCNNGG	5 cut(s)	51, 80, 348, 367, 828
BssMI	GATC	9 cut(s)	120, 164, 459, 585, 634, 782, 835, 871, 967
BssT1I	CCWWGG	5 cut(s)	51, 80, 348, 367, 828
Bst4CI	ACNGT	3 cut(s)	31, 257, 1043
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	466
BstDSI	CCRYGG	1 cut(s)	367
BstEII	GGTNACC	1 cut(s)	403
BstF5I	GGATG	4 cut(s)	394, 434, 637, 1015
BstFNI	CGCG	1 cut(s)	196
BstKTI	GATC	9 cut(s)	123, 167, 462, 588, 637, 785, 838, 874, 970
BstMAI	GTCTC	1 cut(s)	994
BstMBI	GATC	9 cut(s)	120, 164, 459, 585, 634, 782, 835, 871, 967
BstPAI	GACNNNNGTC	1 cut(s)	862
BstPI	GGTNACC	1 cut(s)	403
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	533
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	3 cut(s)	782, 835, 871
BstYI	RGATCY	3 cut(s)	782, 835, 871
BsuRI	GGCC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	367
BtsCI	GGATG	4 cut(s)	394, 434, 637, 1015
BtsIMutI	CAGTG	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	857
Csp6I	GTAC	4 cut(s)	258, 746, 767, 1044
CspCI	CAANNNNNGTGG	6 cut(s)	12, 47, 249, 284, 337, 372
CviAII	CATG	5 cut(s)	72, 207, 248, 368, 457
CviJI	RGCY	7 cut(s)	76, 193, 272, 380, 487, 548, 596
CviKI_1	RGCY	7 cut(s)	76, 193, 272, 380, 487, 548, 596
CviQI	GTAC	4 cut(s)	258, 746, 767, 1044
DdeI	CTNAG	1 cut(s)	466
DpnI	GATC	9 cut(s)	122, 166, 461, 587, 636, 784, 837, 873, 969
DpnII	GATC	9 cut(s)	120, 164, 459, 585, 634, 782, 835, 871, 967
DraI	TTTAAA	1 cut(s)	909
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	5 cut(s)	51, 80, 348, 367, 828
Eco47I	GGWCC	1 cut(s)	857
Eco57I	CTGAAG	1 cut(s)	888
Eco91I	GGTNACC	1 cut(s)	403
EcoO65I	GGTNACC	1 cut(s)	403
EcoRI	GAATTC	1 cut(s)	917
EcoT14I	CCWWGG	5 cut(s)	51, 80, 348, 367, 828
EcoT22I	ATGCAT	2 cut(s)	567, 1074
ErhI	CCWWGG	5 cut(s)	51, 80, 348, 367, 828
FaeI	CATG	5 cut(s)	75, 210, 251, 371, 460
FaqI	GGGAC	2 cut(s)	98, 870
FatI	CATG	5 cut(s)	71, 206, 247, 367, 456
FbaI	TGATCA	2 cut(s)	459, 585
Fnu4HI	GCNGC	2 cut(s)	191, 194
FokI	GGATG	4 cut(s)	401, 441, 624, 1002
Fsp4HI	GCNGC	2 cut(s)	191, 194
FspBI	CTAG	3 cut(s)	300, 593, 642
GluI	GCNGC	2 cut(s)	191, 194
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	2 cut(s)	136, 426
Hin1II	CATG	5 cut(s)	75, 210, 251, 371, 460
HincII	GTYRAC	1 cut(s)	1039
HindII	GTYRAC	1 cut(s)	1039
HinfI	GANTC	6 cut(s)	100, 198, 203, 481, 625, 821
HpaII	CCGG	2 cut(s)	136, 426
HphI	GGTGA	3 cut(s)	415, 454, 1110
Hpy166II	GTNNAC	2 cut(s)	1039, 1118
Hpy188I	TCNGA	3 cut(s)	480, 868, 947
Hpy188III	TCNNGA	4 cut(s)	92, 104, 797, 1007
Hpy8I	GTNNAC	2 cut(s)	1039, 1118
HpyAV	CCTTC	6 cut(s)	50, 452, 531, 736, 847, 1156
HpyCH4III	ACNGT	3 cut(s)	31, 257, 1043
HpyCH4IV	ACGT	1 cut(s)	885
HpyF3I	CTNAG	1 cut(s)	466
HpySE526I	ACGT	1 cut(s)	885
Hsp92II	CATG	5 cut(s)	75, 210, 251, 371, 460
Ksp22I	TGATCA	2 cut(s)	459, 585
Kzo9I	GATC	9 cut(s)	120, 164, 459, 585, 634, 782, 835, 871, 967
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	4 cut(s)	379, 419, 607, 943
MaeI	CTAG	3 cut(s)	300, 593, 642
MaeII	ACGT	1 cut(s)	885
MaeIII	GTNAC	4 cut(s)	209, 403, 971, 1079
MalI	GATC	9 cut(s)	122, 166, 461, 587, 636, 784, 837, 873, 969
MboI	GATC	9 cut(s)	120, 164, 459, 585, 634, 782, 835, 871, 967
MboII	GAAGA	3 cut(s)	47, 354, 881
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	3 cut(s)	782, 835, 871
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	9 cut(s)	168, 317, 394, 435, 687, 708, 917, 1001, 1021
MlyI	GAGTC	3 cut(s)	192, 475, 619
MmeI	TCCRAC	1 cut(s)	503
MnlI	CCTC	7 cut(s)	31, 231, 234, 394, 419, 668, 1094
Mph1103I	ATGCAT	2 cut(s)	567, 1074
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	5 cut(s)	309, 413, 603, 908, 929
MspI	CCGG	2 cut(s)	136, 426
MunI	CAATTG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	367
NdeII	GATC	9 cut(s)	120, 164, 459, 585, 634, 782, 835, 871, 967
NlaIII	CATG	5 cut(s)	75, 210, 251, 371, 460
NlaIV	GGNNCC	1 cut(s)	858
NmeAIII	GCCGAG	1 cut(s)	463
NmuCI	GTSAC	1 cut(s)	209
NsiI	ATGCAT	2 cut(s)	567, 1074
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	3 cut(s)	100, 203, 821
PkrI	GCNGC	2 cut(s)	192, 195
PleI	GAGTC	3 cut(s)	192, 475, 619
PpsI	GAGTC	3 cut(s)	192, 475, 619
PshAI	GACNNNNGTC	1 cut(s)	862
PsiI	TTATAA	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	885
PspEI	GGTNACC	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	858
PspPI	GGNCC	1 cut(s)	857
PstI	CTGCAG	1 cut(s)	517
PsuI	RGATCY	3 cut(s)	782, 835, 871
RsaI	GTAC	4 cut(s)	259, 747, 768, 1045
RsaNI	GTAC	4 cut(s)	258, 746, 767, 1044
SaqAI	TTAA	5 cut(s)	309, 413, 603, 908, 929
SatI	GCNGC	2 cut(s)	191, 194
Sau3AI	GATC	9 cut(s)	120, 164, 459, 585, 634, 782, 835, 871, 967
Sau96I	GGNCC	1 cut(s)	857
SchI	GAGTC	3 cut(s)	192, 475, 619
SduI	GDGCHC	1 cut(s)	533
SfaNI	GCATC	4 cut(s)	379, 419, 607, 943
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	1 cut(s)	857
SmiI	ATTTAAAT	1 cut(s)	909
Sse9I	AATT	9 cut(s)	168, 317, 394, 435, 687, 708, 917, 1001, 1021
SsiI	CCGC	2 cut(s)	194, 386
SspMI	CTAG	3 cut(s)	300, 593, 642
StyI	CCWWGG	5 cut(s)	51, 80, 348, 367, 828
SwaI	ATTTAAAT	1 cut(s)	909
TaaI	ACNGT	3 cut(s)	31, 257, 1043
TaiI	ACGT	1 cut(s)	888
TaqI	TCGA	1 cut(s)	201
TasI	AATT	9 cut(s)	168, 317, 394, 435, 687, 708, 917, 1001, 1021
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	3 cut(s)	100, 203, 821
Tru1I	TTAA	5 cut(s)	309, 413, 603, 908, 929
Tru9I	TTAA	5 cut(s)	309, 413, 603, 908, 929
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	1 cut(s)	190
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	866, 930
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	857
XapI	RAATTY	4 cut(s)	708, 917, 1001, 1021
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	3 cut(s)	300, 593, 642
Zsp2I	ATGCAT	2 cut(s)	567, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.