RLG00000032585

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003266
Physical Location & Seq
Forward (+)
16793920 .. 16795026
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032585

Sequence Viewer

Length: 1107 bp
ATGGTAGAGGCAGTCGTATTTGAATCAAACCAAAGAAAAAGGAAAGAAGCCTCAGTTTCTGCAGGTTGGGCATGGCTTCCAAGTGAGCTTTTGGAATTGATACTAGACAAATTGGTACTCATCTCTGACTACATCCAGTTCGGTGCAGTTGGCAAGCATTGGCAATCCGCCGCTAAACAACATAAACAGCAATGGATGAAATTTTGTCACAAACAGCTTCCTATGCTGATGCAGATTACTAGAAACCGCAACAAAAGCAATGCTGCCTTGTTTAGTATATCGCAGGGAGGTATGCTGAGGCAGTTGAGCTATGTGCCTTATTACAACAAAAAGGGAGTTGAATTATTTTCCACCCATGGTTGGTTAGCTTATAATGACAAGTTGGTTCTGACCTTCTTGAACCCTTTTACCGGAGATACTATTAGCCCTCCACCAATCATAGAACCTACAGATGCAGTACAAGACAGATTGGATTCTCCCTCTACGCGCATTTATCAGGTTGCATTGTCAGCTGACCCTTGTTTGAATCCCATTGTTTATGAGGTTCTAGTACAATATAGGCTTTATCCTCAAACCTATCTAGCTCATTTTAATTCAGCAGATGCTACTTGGACTCAAATAGGTAATACATCGTTAGCGTTGAGCGTTCTTGATGCACTTTATTATAAAGGCCAGTTTGTTGATCTTACCGTGTTCGATGAGAAATTTCCCTCTATCTATGTCAGCGGCATAACAACTACCTACCAGCAGTCTGCTCGAGGTACAGCTAGGAAATATATTGTGGAATCGTCCGCGGGAGACTTATTGTTGGTTAGGATAAAAGGATTTGAGACTGATGAGAAGAGTATACAAGTATACAAGTTGTTGCGTGCTGCTGGGAGAAGACCCAAATGGGTAGAGATTGAGAGCATCGGAATTGATGTTTTGTTTTTGGGTGGAGGAGAACCTATATGCGTCTCGACTTTAGAGTTTCCAGAATGTCATCCAAATTCCATATACTTCACGGATGGTGTCTTCTACTTAGAAAACAGAAGAATGGAAAGGCATAACTGCGTAAATAAACACAAGGAACAGACACTCTTATGGATTTTGCCCACTATTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

369

Amino Acids

41.93

Weight (kDa)

8.14

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 117 - 342 4.7e-32 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 372, 666
Acc36I ACCTGC 1 cut(s) 53
AccI GTMKAC 2 cut(s) 847, 855
AccII CGCG 2 cut(s) 487, 794
AciI CCGC 6 cut(s) 168, 171, 247, 726, 792, 794
AcsI RAATTY 3 cut(s) 200, 704, 988
AfaI GTAC 4 cut(s) 117, 459, 552, 763
AfiI CCNNNNNNNGG 2 cut(s) 360, 410
AgsI TTSAA 4 cut(s) 23, 341, 400, 526
AleI CACNNNNGTG 1 cut(s) 1100
AluBI AGCT 7 cut(s) 88, 217, 309, 368, 512, 584, 767
AluI AGCT 7 cut(s) 88, 217, 309, 368, 512, 584, 767
Alw26I GTCTC 3 cut(s) 792, 824, 961
AlwNI CAGNNNCTG 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 756
AoxI GGCC 1 cut(s) 670
ApeKI GCWGC 2 cut(s) 263, 872
ApoI RAATTY 3 cut(s) 200, 704, 988
AspLEI GCGC 1 cut(s) 489
AvaI CYCGRG 1 cut(s) 756
BbsI GAAGAC 2 cut(s) 889, 1006
BbvCI CCTCAGC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 250, 859
BccI CCATC 1 cut(s) 1001
BcgI CGANNNNNNTGC 2 cut(s) 737, 771
BcoDI GTCTC 3 cut(s) 792, 824, 961
BfaI CTAG 5 cut(s) 104, 240, 548, 581, 768
BfmI CTRYAG 2 cut(s) 60, 447
BfuAI ACCTGC 1 cut(s) 53
BisI GCNGC 4 cut(s) 171, 264, 727, 873
BlsI GCNGC 4 cut(s) 172, 265, 728, 874
BmeT110I CYCGRG 1 cut(s) 756
BmsI GCATC 5 cut(s) 219, 442, 592, 643, 918
BpiI GAAGAC 2 cut(s) 889, 1006
Bpu10I CCTNAGC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 355, 792
BsaWI WCCGGW 1 cut(s) 410
Bsc4I CCNNNNNNNGG 2 cut(s) 360, 410
Bse1I ACTGG 2 cut(s) 136, 673
Bse3DI GCAATG 2 cut(s) 197, 265
BseDI CCNNGG 2 cut(s) 355, 792
BseGI GGATG 4 cut(s) 132, 201, 982, 1012
BseLI CCNNNNNNNGG 2 cut(s) 360, 410
BseMI GCAATG 2 cut(s) 197, 265
BseMII CTCAG 2 cut(s) 66, 287
BseNI ACTGG 2 cut(s) 136, 673
BseRI GAGGAG 1 cut(s) 954
BseXI GCAGC 2 cut(s) 250, 859
BseYI CCCAGC 1 cut(s) 875
BsgI GTGCAG 1 cut(s) 165
Bsh1236I CGCG 2 cut(s) 487, 794
BshFI GGCC 1 cut(s) 672
BsiHKCI CYCGRG 1 cut(s) 756
BsiSI CCGG 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 360, 410
BsmAI GTCTC 3 cut(s) 792, 824, 961
BsmBI CGTCTC 1 cut(s) 961
BsnI GGCC 1 cut(s) 672
BsoBI CYCGRG 1 cut(s) 756
Bsp143I GATC 1 cut(s) 682
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 6 cut(s) 168, 171, 247, 726, 792, 794
BspANI GGCC 1 cut(s) 672
BspCNI CTCAG 2 cut(s) 65, 288
BspFNI CGCG 2 cut(s) 487, 794
BspMAI CTGCAG 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 53
BsrDI GCAATG 2 cut(s) 197, 265
BsrI ACTGG 2 cut(s) 136, 673
BssECI CCNNGG 2 cut(s) 355, 792
BssMI GATC 1 cut(s) 682
BssNAI GTATAC 2 cut(s) 848, 856
BssT1I CCWWGG 1 cut(s) 355
Bst1107I GTATAC 2 cut(s) 848, 856
Bst4CI ACNGT 1 cut(s) 691
Bst6I CTCTTC 1 cut(s) 836
BstC8I GCNNGC 2 cut(s) 155, 870
BstDEI CTNAG 3 cut(s) 52, 296, 1021
BstDSI CCRYGG 2 cut(s) 355, 792
BstF5I GGATG 4 cut(s) 132, 201, 982, 1012
BstFNI CGCG 2 cut(s) 487, 794
BstHHI GCGC 1 cut(s) 489
BstKTI GATC 1 cut(s) 685
BstMAI GTCTC 3 cut(s) 792, 824, 961
BstMBI GATC 1 cut(s) 682
BstMWI GCNNNNNNNGC 4 cut(s) 68, 223, 255, 509
BstSFI CTRYAG 2 cut(s) 60, 447
BstUI CGCG 2 cut(s) 487, 794
BstV1I GCAGC 2 cut(s) 250, 859
BstV2I GAAGAC 2 cut(s) 889, 1006
BstZ17I GTATAC 2 cut(s) 848, 856
BsuRI GGCC 1 cut(s) 672
BtgI CCRYGG 2 cut(s) 355, 792
BtsCI GGATG 4 cut(s) 132, 201, 982, 1012
BveI ACCTGC 1 cut(s) 53
Cac8I GCNNGC 2 cut(s) 155, 870
CaiI CAGNNNCTG 1 cut(s) 59
CfoI GCGC 1 cut(s) 489
Cfr42I CCGCGG 1 cut(s) 795
CseI GACGC 1 cut(s) 943
Csp6I GTAC 4 cut(s) 116, 458, 551, 762
CviAII CATG 2 cut(s) 72, 356
CviQI GTAC 4 cut(s) 116, 458, 551, 762
DdeI CTNAG 3 cut(s) 52, 296, 1021
DpnI GATC 1 cut(s) 684
DpnII GATC 1 cut(s) 682
Eam1104I CTCTTC 1 cut(s) 836
EarI CTCTTC 1 cut(s) 836
EciI GGCGGA 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 756
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 961
FaeI CATG 2 cut(s) 75, 359
FatI CATG 2 cut(s) 71, 355
FauI CCCGC 1 cut(s) 787
FblI GTMKAC 2 cut(s) 847, 855
Fnu4HI GCNGC 4 cut(s) 171, 264, 727, 873
FokI GGATG 4 cut(s) 119, 208, 969, 1019
Fsp4HI GCNGC 4 cut(s) 171, 264, 727, 873
FspBI CTAG 5 cut(s) 104, 240, 548, 581, 768
GlaI GCGC 1 cut(s) 488
GluI GCNGC 4 cut(s) 171, 264, 727, 873
GsaI CCCAGC 1 cut(s) 879
HaeIII GGCC 1 cut(s) 672
HapII CCGG 1 cut(s) 411
HgaI GACGC 1 cut(s) 943
HhaI GCGC 1 cut(s) 489
Hin1II CATG 2 cut(s) 75, 359
Hin6I GCGC 1 cut(s) 487
HinP1I GCGC 1 cut(s) 487
HinfI GANTC 5 cut(s) 23, 473, 526, 613, 785
HpaII CCGG 1 cut(s) 411
Hpy166II GTNNAC 2 cut(s) 848, 856
Hpy188I TCNGA 3 cut(s) 127, 390, 914
Hpy188III TCNNGA 4 cut(s) 397, 650, 958, 974
Hpy8I GTNNAC 2 cut(s) 848, 856
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 1 cut(s) 691
HpyCH4V TGCA 6 cut(s) 62, 146, 232, 455, 503, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 223, 255, 509
HpyF3I CTNAG 3 cut(s) 52, 296, 1021
Hsp92II CATG 2 cut(s) 75, 359
HspAI GCGC 1 cut(s) 487
KspI CCGCGG 1 cut(s) 795
Kzo9I GATC 1 cut(s) 682
LpnPI CCDG 9 cut(s) 48, 149, 269, 424, 482, 686, 758, 861, 987
Lsp1109I GCAGC 2 cut(s) 250, 859
LweI GCATC 5 cut(s) 219, 442, 592, 643, 918
MaeI CTAG 5 cut(s) 104, 240, 548, 581, 768
MaeIII GTNAC 1 cut(s) 206
MalI GATC 1 cut(s) 684
MboI GATC 1 cut(s) 682
MboII GAAGA 4 cut(s) 853, 894, 1006, 1044
MluCI AATT 8 cut(s) 95, 110, 200, 341, 592, 704, 915, 988
MlyI GAGTC 1 cut(s) 607
MseI TTAA 1 cut(s) 591
MslI CAYNNNNRTG 2 cut(s) 1081, 1100
MspA1I CMGCKG 3 cut(s) 512, 726, 794
MspI CCGG 1 cut(s) 411
MvnI CGCG 2 cut(s) 487, 794
MwoI GCNNNNNNNGC 4 cut(s) 68, 223, 255, 509
NcoI CCATGG 1 cut(s) 355
NdeII GATC 1 cut(s) 682
NlaIII CATG 2 cut(s) 75, 359
NmuCI GTSAC 1 cut(s) 206
OliI CACNNNNGTG 1 cut(s) 1100
PaeR7I CTCGAG 1 cut(s) 756
PfeI GAWTC 4 cut(s) 23, 473, 526, 785
PkrI GCNGC 4 cut(s) 172, 265, 728, 874
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
PsiI TTATAA 2 cut(s) 372, 666
PspFI CCCAGC 1 cut(s) 875
PspXI VCTCGAGB 1 cut(s) 756
PstI CTGCAG 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 4 cut(s) 117, 459, 552, 763
RsaNI GTAC 4 cut(s) 116, 458, 551, 762
RseI CAYNNNNRTG 2 cut(s) 1081, 1100
SacII CCGCGG 1 cut(s) 795
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 4 cut(s) 171, 264, 727, 873
Sau3AI GATC 1 cut(s) 682
SchI GAGTC 1 cut(s) 607
SfaNI GCATC 5 cut(s) 219, 442, 592, 643, 918
SfcI CTRYAG 2 cut(s) 60, 447
Sfr274I CTCGAG 1 cut(s) 756
Sfr303I CCGCGG 1 cut(s) 795
SgrBI CCGCGG 1 cut(s) 795
SlaI CTCGAG 1 cut(s) 756
SmiMI CAYNNNNRTG 2 cut(s) 1081, 1100
SmlI CTYRAG 1 cut(s) 756
SmoI CTYRAG 1 cut(s) 756
Sse9I AATT 8 cut(s) 95, 110, 200, 341, 592, 704, 915, 988
SsiI CCGC 6 cut(s) 168, 171, 247, 726, 792, 794
SspMI CTAG 5 cut(s) 104, 240, 548, 581, 768
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 1 cut(s) 691
TaqI TCGA 3 cut(s) 696, 757, 959
TasI AATT 8 cut(s) 95, 110, 200, 341, 592, 704, 915, 988
TatI WGTACW 2 cut(s) 457, 550
TauI GCSGC 2 cut(s) 173, 729
TfiI GAWTC 4 cut(s) 23, 473, 526, 785
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 2 cut(s) 263, 872
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 212
TspGWI ACGGA 1 cut(s) 1019
XapI RAATTY 3 cut(s) 200, 704, 988
XhoI CTCGAG 1 cut(s) 756
XmiI GTMKAC 2 cut(s) 847, 855
XspI CTAG 5 cut(s) 104, 240, 548, 581, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.