Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003266

Physical Location & Seq

Genomic Coordinates Forward (+)

5052275 .. 5054893

Gene Structure 2619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0057600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTTGACGGTTTTTGACAAGGCAACAGGAAACCCTCCTGTAGAGCTGGGGCTTCCTTCAATTGGGCCGGAGAAGGCAAAGACCAGAGAGGACATCTTGAAGCTTTTCCAATCATCACGTCCTGAGTGCACTGTATACTACCTTTCAGATGGGAATTTCATGGCTTTGTCTCATGACAATGAAAATCAGTCTCACCCAAGGTCAATTGTAGTCATAGACGATGTCTTCTGCATTTTCATTGGGACTTTGGAGAACACTTCTGACCTGAGACGATACTATGGCCTTCCAAGGCAAGCAACAGAAGCCATGGTTGTGGTTGAAGTCTATAAAGTCCTAAGAGATCGAGCACCCTACCCACCTGATCAAGTCATCAAAGATCTGCAGGGAAAATTTGCATTTATCCTCTTCGATGCTAGATCTGGTACCCTTTTTGCAGCCAGGGACCGAGATGGAAGCGTTGAACTTCACTGGGGAATGGCGGGTGATGGGTCTCTAGTCTGCTCCCACAAACTCAACATCATTAGAGAAGCTTGTGGAAAATGTTGTGCGCCTTTCCCTCCAGGCTGCATATTCACAAATGGAAGTGGTTTGATGAGCTTTGTTCATCCACTGCACAAGGTAAGGGCCATTGCACGCGAAGACGACAGTGGCAACATTTGTGGAGTTGCTTTTCAGGTGGATCTGTTCACACGAATCCCCAGCATTCCACGCACCGGTAGTGGACAGAATTGGGCGGATGCAACTGCTGTCAAGGAAGGAGATCACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

256

Amino Acids

28.24

Weight (kDa)

5.97

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3700	PF12481	2 - 226	7.4e-87	Aluminium induced protein
GATase_6	PF13522	62 - 165	1.6e-06	Glutamine amidotransferase domain
GATase_7	PF13537	73 - 168	2.2e-09	Glutamine amidotransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12381
malus_domestica	MD05G1250900.v1.1 MD10G1231500.v1.1
prunus_persica	Prupe.6G183700_v2.0.a1 Prupe.6G184200_v2.0.a1 Prupe.6G184600_v2.0.a1 Prupe.8G064600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020191 RchiOBHm_Chr5g0020201
rosa_laevigata	RLG00000032508 RLG00000032510 RLG00000032511 RLG00000032585 RLG00000033606
rosa_multiflora	Rmu_sc0002087.1_g000011 Rmu_sc0002087.1_g000012 Rmu_ssc0000244.1_g000031
rosa_roxburghii	Rroxscaffold_1G00057970 Rroxscaffold_1G00058000 Rroxscaffold_1G00058010
rosa_rugosa	Rorug05G0057600 Rorug05G0057700 Rorug05G0057800
rosa_samantha	Rh5AG148000 Rh5AG148100 Rh5BG147600 Rh5BG147700 Rh5BG147800 Rh5CG159000 Rh5CG159100 Rh5CG274700 Rh5DG146800 Rh5DG146900 Rh5DG153600 Rh5DG252100
rosa_wichuraiana	Rw5G013090 Rw5G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	422
AccB1I	GGYRCC	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	636
AciI	CCGC	2 cut(s)	479, 734
AclWI	GGATC	1 cut(s)	687
AcsI	RAATTY	2 cut(s)	154, 389
AfaI	GTAC	1 cut(s)	424
AfiI	CCNNNNNNNGG	2 cut(s)	62, 713
AgeI	ACCGGT	1 cut(s)	713
AgsI	TTSAA	4 cut(s)	60, 100, 320, 461
AjiI	CACGTC	1 cut(s)	119
AjnI	CCWGG	2 cut(s)	437, 559
AluBI	AGCT	4 cut(s)	46, 103, 530, 597
AluI	AGCT	4 cut(s)	46, 103, 530, 597
Alw21I	GWGCWC	2 cut(s)	131, 349
Alw26I	GTCTC	4 cut(s)	174, 195, 262, 495
Alw44I	GTGCAC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	687
AoxI	GGCC	3 cut(s)	65, 280, 624
ApaLI	GTGCAC	1 cut(s)	127
ApeKI	GCWGC	2 cut(s)	434, 564
ApoI	RAATTY	2 cut(s)	154, 389
AsiGI	ACCGGT	1 cut(s)	713
Asp700I	GAANNNNTTC	1 cut(s)	104
Asp718I	GGTACC	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	3 cut(s)	65, 442, 624
AsuHPI	GGTGA	2 cut(s)	185, 494
AvaII	GGWCC	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	422
BbsI	GAAGAC	2 cut(s)	217, 645
Bbv12I	GWGCWC	2 cut(s)	131, 349
BbvI	GCAGC	2 cut(s)	446, 551
BccI	CCATC	3 cut(s)	143, 443, 479
BciT130I	CCWGG	2 cut(s)	439, 561
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	4 cut(s)	174, 195, 262, 495
BfaI	CTAG	3 cut(s)	414, 494, 769
BfmI	CTRYAG	2 cut(s)	39, 380
BglII	AGATCT	2 cut(s)	376, 416
BisI	GCNGC	2 cut(s)	435, 565
BlsI	GCNGC	2 cut(s)	436, 566
Bme1390I	CCNGG	2 cut(s)	439, 561
Bme18I	GGWCC	1 cut(s)	442
BmgBI	CACGTC	1 cut(s)	119
BmgT120I	GGNCC	3 cut(s)	65, 442, 624
BmiI	GGNNCC	2 cut(s)	424, 443
BmrFI	CCNGG	2 cut(s)	439, 561
BmrI	ACTGGG	1 cut(s)	478
BmsI	GCATC	2 cut(s)	400, 727
BmuI	ACTGGG	1 cut(s)	478
BpiI	GAAGAC	2 cut(s)	217, 645
BpmI	CTGGAG	1 cut(s)	543
BsaI	GGTCTC	1 cut(s)	495
BsaJI	CCNNGG	4 cut(s)	197, 287, 306, 438
BsaWI	WCCGGW	1 cut(s)	713
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 713
Bse118I	RCCGGY	1 cut(s)	713
Bse1I	ACTGG	1 cut(s)	473
Bse3DI	GCAATG	1 cut(s)	627
BseBI	CCWGG	2 cut(s)	439, 561
BseDI	CCNNGG	4 cut(s)	197, 287, 306, 438
BseGI	GGATG	2 cut(s)	604, 742
BseLI	CCNNNNNNNGG	2 cut(s)	62, 713
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	114, 257
BseNI	ACTGG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	446, 551
BseYI	CCCAGC	2 cut(s)	46, 698
BsgI	GTGCAG	1 cut(s)	596
Bsh1236I	CGCG	1 cut(s)	636
BshFI	GGCC	3 cut(s)	67, 282, 626
BshNI	GGYRCC	1 cut(s)	422
BshTI	ACCGGT	1 cut(s)	713
BsiHKAI	GWGCWC	2 cut(s)	131, 349
BsiSI	CCGG	2 cut(s)	68, 714
BslFI	GGGAC	2 cut(s)	256, 455
BslI	CCNNNNNNNGG	2 cut(s)	62, 713
BsmAI	GTCTC	4 cut(s)	174, 195, 262, 495
BsmBI	CGTCTC	1 cut(s)	262
BsmFI	GGGAC	2 cut(s)	256, 455
BsmI	GAATGC	1 cut(s)	702
BsnI	GGCC	3 cut(s)	67, 282, 626
Bso31I	GGTCTC	1 cut(s)	495
Bsp1286I	GDGCHC	2 cut(s)	131, 349
Bsp143I	GATC	6 cut(s)	340, 361, 376, 416, 679, 760
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	2 cut(s)	479, 734
BspANI	GGCC	3 cut(s)	67, 282, 626
BspCNI	CTCAG	2 cut(s)	115, 258
BspFNI	CGCG	1 cut(s)	636
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	424, 443
BspMAI	CTGCAG	1 cut(s)	384
BspPI	GGATC	1 cut(s)	687
BspT107I	GGYRCC	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	627
BsrFI	RCCGGY	1 cut(s)	713
BsrI	ACTGG	1 cut(s)	473
BssAI	RCCGGY	1 cut(s)	713
BssECI	CCNNGG	4 cut(s)	197, 287, 306, 438
BssMI	GATC	6 cut(s)	340, 361, 376, 416, 679, 760
BssNAI	GTATAC	1 cut(s)	136
BssT1I	CCWWGG	3 cut(s)	197, 287, 306
Bst1107I	GTATAC	1 cut(s)	136
Bst2UI	CCWGG	2 cut(s)	439, 561
Bst4CI	ACNGT	3 cut(s)	10, 133, 647
Bst6I	CTCTTC	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	294, 634
BstDEI	CTNAG	3 cut(s)	123, 266, 335
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	604, 742
BstFNI	CGCG	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	6 cut(s)	343, 364, 379, 419, 682, 763
BstMAI	GTCTC	4 cut(s)	174, 195, 262, 495
BstMBI	GATC	6 cut(s)	340, 361, 376, 416, 679, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 708
BstNI	CCWGG	2 cut(s)	439, 561
BstSCI	CCNGG	2 cut(s)	437, 559
BstSFI	CTRYAG	2 cut(s)	39, 380
BstSLI	GKGCMC	1 cut(s)	131
BstUI	CGCG	1 cut(s)	636
BstV1I	GCAGC	2 cut(s)	446, 551
BstV2I	GAAGAC	2 cut(s)	217, 645
BstX2I	RGATCY	3 cut(s)	376, 416, 679
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	3 cut(s)	376, 416, 679
BstZ17I	GTATAC	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	67, 282, 626
BtgI	CCRYGG	1 cut(s)	306
BtrI	CACGTC	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	604, 742
BtsI	GCAGTG	1 cut(s)	608
BtsIMutI	CAGTG	4 cut(s)	129, 466, 608, 652
Cac8I	GCNNGC	2 cut(s)	294, 634
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	1 cut(s)	550
Cfr10I	RCCGGY	1 cut(s)	713
Cfr13I	GGNCC	3 cut(s)	65, 442, 624
Csp6I	GTAC	1 cut(s)	423
CspAI	ACCGGT	1 cut(s)	713
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	3 cut(s)	160, 173, 307
CviQI	GTAC	1 cut(s)	423
DdeI	CTNAG	3 cut(s)	123, 266, 335
DpnI	GATC	6 cut(s)	342, 363, 378, 418, 681, 762
DpnII	GATC	6 cut(s)	340, 361, 376, 416, 679, 760
Eam1104I	CTCTTC	1 cut(s)	410
EarI	CTCTTC	1 cut(s)	410
EciI	GGCGGA	1 cut(s)	749
Eco130I	CCWWGG	3 cut(s)	197, 287, 306
Eco31I	GGTCTC	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	442
EcoRII	CCWGG	2 cut(s)	437, 559
EcoT14I	CCWWGG	3 cut(s)	197, 287, 306
ErhI	CCWWGG	3 cut(s)	197, 287, 306
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	3 cut(s)	163, 176, 310
FaiI	YATR	8 cut(s)	136, 161, 174, 215, 279, 308, 327, 569
FaqI	GGGAC	2 cut(s)	256, 455
FatI	CATG	3 cut(s)	159, 172, 306
FauI	CCCGC	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	435, 565
FokI	GGATG	2 cut(s)	591, 749
Fsp4HI	GCNGC	2 cut(s)	435, 565
FspBI	CTAG	3 cut(s)	414, 494, 769
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	2 cut(s)	435, 565
GsaI	CCCAGC	2 cut(s)	50, 702
GsuI	CTGGAG	1 cut(s)	543
HaeIII	GGCC	3 cut(s)	67, 282, 626
HapII	CCGG	2 cut(s)	68, 714
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	3 cut(s)	163, 176, 310
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	2 cut(s)	101, 528
HinfI	GANTC	1 cut(s)	693
HpaII	CCGG	2 cut(s)	68, 714
HphI	GGTGA	2 cut(s)	185, 494
Hpy166II	GTNNAC	5 cut(s)	6, 129, 136, 687, 722
Hpy188I	TCNGA	2 cut(s)	148, 262
Hpy188III	TCNNGA	3 cut(s)	97, 122, 173
Hpy8I	GTNNAC	5 cut(s)	6, 129, 136, 687, 722
HpyAV	CCTTC	4 cut(s)	66, 67, 293, 749
HpyCH4III	ACNGT	3 cut(s)	10, 133, 647
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	9 cut(s)	129, 231, 382, 395, 434, 567, 613, 632, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 708
HpyF3I	CTNAG	3 cut(s)	123, 266, 335
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	3 cut(s)	163, 176, 310
HspAI	GCGC	1 cut(s)	548
KpnI	GGTACC	1 cut(s)	426
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	6 cut(s)	340, 361, 376, 416, 679, 760
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	2 cut(s)	446, 551
LweI	GCATC	2 cut(s)	400, 727
MaeI	CTAG	3 cut(s)	414, 494, 769
MaeII	ACGT	1 cut(s)	118
MalI	GATC	6 cut(s)	342, 363, 378, 418, 681, 762
MboI	GATC	6 cut(s)	340, 361, 376, 416, 679, 760
MboII	GAAGA	3 cut(s)	217, 397, 650
MfeI	CAATTG	2 cut(s)	60, 204
MflI	RGATCY	3 cut(s)	376, 416, 679
MhlI	GDGCHC	2 cut(s)	131, 349
MluCI	AATT	5 cut(s)	60, 154, 204, 389, 727
MnlI	CCTC	4 cut(s)	45, 82, 413, 567
MroXI	GAANNNNTTC	1 cut(s)	104
MslI	CAYNNNNRTG	2 cut(s)	177, 311
MspI	CCGG	2 cut(s)	68, 714
MspR9I	CCNGG	2 cut(s)	439, 561
MunI	CAATTG	2 cut(s)	60, 204
Mva1269I	GAATGC	1 cut(s)	702
MvaI	CCWGG	2 cut(s)	439, 561
MvnI	CGCG	1 cut(s)	636
MwoI	GCNNNNNNNGC	2 cut(s)	302, 708
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	6 cut(s)	340, 361, 376, 416, 679, 760
NlaIII	CATG	3 cut(s)	163, 176, 310
NlaIV	GGNNCC	2 cut(s)	424, 443
PagI	TCATGA	1 cut(s)	172
PctI	GAATGC	1 cut(s)	702
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	693
PflFI	GACNNNGTC	1 cut(s)	221
PinAI	ACCGGT	1 cut(s)	713
PkrI	GCNGC	2 cut(s)	436, 566
Psp6I	CCWGG	2 cut(s)	437, 559
PspFI	CCCAGC	2 cut(s)	46, 698
PspGI	CCWGG	2 cut(s)	437, 559
PspN4I	GGNNCC	2 cut(s)	424, 443
PspPI	GGNCC	3 cut(s)	65, 442, 624
PstI	CTGCAG	1 cut(s)	384
PsuI	RGATCY	3 cut(s)	376, 416, 679
PsyI	GACNNNGTC	1 cut(s)	221
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
RseI	CAYNNNNRTG	2 cut(s)	177, 311
SatI	GCNGC	2 cut(s)	435, 565
Sau3AI	GATC	6 cut(s)	340, 361, 376, 416, 679, 760
Sau96I	GGNCC	3 cut(s)	65, 442, 624
ScrFI	CCNGG	2 cut(s)	439, 561
SduI	GDGCHC	2 cut(s)	131, 349
SfaNI	GCATC	2 cut(s)	400, 727
SfcI	CTRYAG	2 cut(s)	39, 380
SinI	GGWCC	1 cut(s)	442
SmiMI	CAYNNNNRTG	2 cut(s)	177, 311
Sse9I	AATT	5 cut(s)	60, 154, 204, 389, 727
SsiI	CCGC	2 cut(s)	479, 734
SspMI	CTAG	3 cut(s)	414, 494, 769
StyD4I	CCNGG	2 cut(s)	437, 559
StyI	CCWWGG	3 cut(s)	197, 287, 306
TaaI	ACNGT	3 cut(s)	10, 133, 647
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	2 cut(s)	343, 408
TaqII	GACCGA	1 cut(s)	459
TasI	AATT	5 cut(s)	60, 154, 204, 389, 727
TfiI	GAWTC	1 cut(s)	693
TscAI	CASTG	4 cut(s)	136, 473, 615, 652
TseI	GCWGC	2 cut(s)	434, 564
TspDTI	ATGAA	4 cut(s)	148, 195, 226, 593
TspRI	CASTG	4 cut(s)	136, 473, 615, 652
Tth111I	GACNNNGTC	1 cut(s)	221
VneI	GTGCAC	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	442
XapI	RAATTY	2 cut(s)	154, 389
XmiI	GTMKAC	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	3 cut(s)	414, 494, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.