Rroxscaffold_1G00058010

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003266
Physical Location & Seq
Forward (+)
79949516 .. 79951104
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00058010.1

Sequence Viewer

Length: 960 bp
ATGCATCCGCGACTCGAATCATGTCACAAACTGCCTCCTCTAATGATTTTTATAAACCAACATGACAACGGTACAAGAAGTGTGGCCTTGCATAGTGGCACACAAGACAAGACTAGCAGGTTTAAGTTGAAATTGAATGGTTTCCCTATTTACGATTTGACCAAGGATTGTGGTTCTTCCCATGGTTGGTTGGCTTATGCGGATGCCAATTTGGAGGTAACCCTCTTAAACCCTTTCACCGGATGCACAATTACCCTTCCACCAGTACGCACAACACATGGCCATTACATCAAGAAGGTTGTATTGTCTGCAGACCCTTCTTTGTGCCCTGATGACTTTGAAGCTCTGGTAATGTATATGCATTACTCTTGCACCAAACTGATCAAACTAGCCCATTTTAAGTCAGGGCAAGATGCTTGGACTCGCATAGATCATCGTAGAATGGAACTTTCTTATGCAATGTATTACAGAGGCAAGTTTCTAATTTGGAATGACCATTGTGAAATTTTTTCAGTTGATGATAGTAGCAAAGGAACGAAGGTACTCCTTGATTATAGATGGGTACTCCTTGCTTATAGATCTTTATATGTTCAGGATAGTAGAATATACCTTGTGGAATCGTCCAAGGGAGATCTATTGCTGATTATGAAGGGACCATCGTCTGAAGATCTGCACATCAACGTTTTCAAGTTGTTGAGTGATTTAAATAATGAATTCAAATGCTTAAAGATTGAGAGTATCGGATATGATGCTTTGTTTTTGGATCGTAACCAGTCTATCTGTGTCTCTGCTTTAGAATTTCCAGAGTGTCATCCAAATTCAATATACTTCGTCAATGGTGACAATCTCAACAGGGTGTCTTCATCATTGTCAGATGGTATTCACACAACTTCGTTGGATGCCAGCGGGAATGCCTTACATGAAATCTCACCTCGCGAGTTTAATTTTACAATTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

319

Amino Acids

36.27

Weight (kDa)

6.42

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 36 - 281 1.6e-43 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 53
Acc36I ACCTGC 1 cut(s) 108
AccII CGCG 2 cut(s) 10, 936
AciI CCGC 3 cut(s) 8, 200, 906
AclI AACGTT 1 cut(s) 681
AclWI GGATC 1 cut(s) 771
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 4 cut(s) 504, 713, 797, 817
AcuI CTGAAG 1 cut(s) 684
AfaI GTAC 4 cut(s) 73, 267, 543, 564
AfiI CCNNNNNNNGG 2 cut(s) 186, 239
AgsI TTSAA 6 cut(s) 130, 136, 341, 688, 718, 822
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
Alw26I GTCTC 1 cut(s) 790
AlwI GGATC 1 cut(s) 771
AoxI GGCC 2 cut(s) 84, 280
ApoI RAATTY 4 cut(s) 504, 713, 797, 817
Asp700I GAANNNNTTC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 653
AsuHPI GGTGA 3 cut(s) 229, 851, 921
AvaII GGWCC 1 cut(s) 653
BaeGI GKGCMC 1 cut(s) 329
BalI TGGCCA 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 852
BccI CCATC 3 cut(s) 552, 664, 869
BclI TGATCA 1 cut(s) 381
BcoDI GTCTC 1 cut(s) 790
BfaI CTAG 2 cut(s) 114, 389
BfmI CTRYAG 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 108
BglII AGATCT 3 cut(s) 578, 631, 667
Bme18I GGWCC 1 cut(s) 653
BmgT120I GGNCC 1 cut(s) 653
BmiI GGNNCC 1 cut(s) 654
BmsI GCATC 6 cut(s) 13, 193, 233, 403, 739, 889
BoxI GACNNNNGTC 1 cut(s) 658
BpiI GAAGAC 1 cut(s) 852
BsaJI CCNNGG 3 cut(s) 162, 181, 624
BsaWI WCCGGW 1 cut(s) 239
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 239
Bse1I ACTGG 2 cut(s) 263, 772
Bse3DI GCAATG 1 cut(s) 465
BseDI CCNNGG 3 cut(s) 162, 181, 624
BseGI GGATG 5 cut(s) 4, 208, 248, 811, 904
BseLI CCNNNNNNNGG 2 cut(s) 186, 239
BseMI GCAATG 1 cut(s) 465
BseNI ACTGG 2 cut(s) 263, 772
BseRI GAGGAG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 329
BsgI GTGCAG 1 cut(s) 656
Bsh1236I CGCG 2 cut(s) 10, 936
BshFI GGCC 2 cut(s) 86, 282
BsiSI CCGG 1 cut(s) 240
BslFI GGGAC 1 cut(s) 666
BslI CCNNNNNNNGG 2 cut(s) 186, 239
BsmAI GTCTC 1 cut(s) 790
BsmFI GGGAC 1 cut(s) 666
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 2 cut(s) 86, 282
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 6 cut(s) 381, 430, 578, 631, 667, 763
Bsp19I CCATGG 1 cut(s) 181
Bsp68I TCGCGA 1 cut(s) 936
BspACI CCGC 3 cut(s) 8, 200, 906
BspANI GGCC 2 cut(s) 86, 282
BspFNI CGCG 2 cut(s) 10, 936
BspLI GGNNCC 1 cut(s) 654
BspMAI CTGCAG 1 cut(s) 313
BspMI ACCTGC 1 cut(s) 108
BspPI GGATC 1 cut(s) 771
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 2 cut(s) 263, 772
BssECI CCNNGG 3 cut(s) 162, 181, 624
BssMI GATC 6 cut(s) 381, 430, 578, 631, 667, 763
BssT1I CCWWGG 3 cut(s) 162, 181, 624
Bst4CI ACNGT 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 904
BstDSI CCRYGG 1 cut(s) 181
BstEII GGTNACC 1 cut(s) 217
BstF5I GGATG 5 cut(s) 4, 208, 248, 811, 904
BstFNI CGCG 2 cut(s) 10, 936
BstKTI GATC 6 cut(s) 384, 433, 581, 634, 670, 766
BstMAI GTCTC 1 cut(s) 790
BstMBI GATC 6 cut(s) 381, 430, 578, 631, 667, 763
BstPAI GACNNNNGTC 1 cut(s) 658
BstPI GGTNACC 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 329
BstUI CGCG 2 cut(s) 10, 936
BstV2I GAAGAC 1 cut(s) 852
BstX2I RGATCY 3 cut(s) 578, 631, 667
BstYI RGATCY 3 cut(s) 578, 631, 667
BsuRI GGCC 2 cut(s) 86, 282
BtgI CCRYGG 1 cut(s) 181
BtsCI GGATG 5 cut(s) 4, 208, 248, 811, 904
BtuMI TCGCGA 1 cut(s) 936
BveI ACCTGC 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 904
Cfr13I GGNCC 1 cut(s) 653
Csp6I GTAC 4 cut(s) 72, 266, 542, 563
CspCI CAANNNNNGTGG 4 cut(s) 63, 98, 151, 186
CviAII CATG 5 cut(s) 21, 62, 182, 278, 920
CviJI RGCY 5 cut(s) 86, 194, 282, 344, 392
CviKI_1 RGCY 5 cut(s) 86, 194, 282, 344, 392
CviQI GTAC 4 cut(s) 72, 266, 542, 563
DpnI GATC 6 cut(s) 383, 432, 580, 633, 669, 765
DpnII GATC 6 cut(s) 381, 430, 578, 631, 667, 763
DraI TTTAAA 1 cut(s) 705
EaeI YGGCCR 1 cut(s) 280
Eco130I CCWWGG 3 cut(s) 162, 181, 624
Eco47I GGWCC 1 cut(s) 653
Eco57I CTGAAG 1 cut(s) 684
Eco91I GGTNACC 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 713
EcoT14I CCWWGG 3 cut(s) 162, 181, 624
EcoT22I ATGCAT 2 cut(s) 6, 363
ErhI CCWWGG 3 cut(s) 162, 181, 624
FaeI CATG 5 cut(s) 24, 65, 185, 281, 923
FaqI GGGAC 1 cut(s) 666
FatI CATG 5 cut(s) 20, 61, 181, 277, 919
FauI CCCGC 1 cut(s) 899
FbaI TGATCA 1 cut(s) 381
FokI GGATG 4 cut(s) 215, 255, 798, 911
FspBI CTAG 2 cut(s) 114, 389
HaeIII GGCC 2 cut(s) 86, 282
HapII CCGG 1 cut(s) 240
Hin1II CATG 5 cut(s) 24, 65, 185, 281, 923
HinfI GANTC 4 cut(s) 12, 17, 421, 617
HpaII CCGG 1 cut(s) 240
HphI GGTGA 3 cut(s) 229, 851, 921
Hpy188I TCNGA 3 cut(s) 664, 743, 874
Hpy188III TCNNGA 4 cut(s) 292, 593, 803, 935
HpyAV CCTTC 5 cut(s) 266, 289, 327, 532, 643
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 681
HpyCH4V TGCA 8 cut(s) 4, 91, 246, 311, 361, 372, 458, 673
HpySE526I ACGT 1 cut(s) 681
Hsp92II CATG 5 cut(s) 24, 65, 185, 281, 923
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 6 cut(s) 381, 430, 578, 631, 667, 763
LweI GCATC 6 cut(s) 13, 193, 233, 403, 739, 889
MaeI CTAG 2 cut(s) 114, 389
MaeII ACGT 1 cut(s) 681
MaeIII GTNAC 4 cut(s) 23, 217, 767, 839
MalI GATC 6 cut(s) 383, 432, 580, 633, 669, 765
MboI GATC 6 cut(s) 381, 430, 578, 631, 667, 763
MboII GAAGA 3 cut(s) 168, 677, 852
MflI RGATCY 3 cut(s) 578, 631, 667
MhlI GDGCHC 1 cut(s) 329
MlsI TGGCCA 1 cut(s) 282
MluNI TGGCCA 1 cut(s) 282
MlyI GAGTC 2 cut(s) 6, 415
MmeI TCCRAC 1 cut(s) 876
MnlI CCTC 6 cut(s) 45, 48, 208, 233, 464, 942
Mox20I TGGCCA 1 cut(s) 282
Mph1103I ATGCAT 2 cut(s) 6, 363
MroXI GAANNNNTTC 1 cut(s) 140
MscI TGGCCA 1 cut(s) 282
MseI TTAA 7 cut(s) 123, 227, 399, 704, 725, 942, 958
Msp20I TGGCCA 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 906
MspI CCGG 1 cut(s) 240
Mva1269I GAATGC 1 cut(s) 916
MvnI CGCG 2 cut(s) 10, 936
NcoI CCATGG 1 cut(s) 181
NdeII GATC 6 cut(s) 381, 430, 578, 631, 667, 763
NlaIII CATG 5 cut(s) 24, 65, 185, 281, 923
NlaIV GGNNCC 1 cut(s) 654
NmuCI GTSAC 2 cut(s) 23, 839
NruI TCGCGA 1 cut(s) 936
NsiI ATGCAT 2 cut(s) 6, 363
PctI GAATGC 1 cut(s) 916
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 2 cut(s) 17, 617
PleI GAGTC 2 cut(s) 6, 415
PpsI GAGTC 2 cut(s) 6, 415
PshAI GACNNNNGTC 1 cut(s) 658
PsiI TTATAA 1 cut(s) 53
Psp1406I AACGTT 1 cut(s) 681
PspEI GGTNACC 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 654
PspPI GGNCC 1 cut(s) 653
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 3 cut(s) 578, 631, 667
RruI TCGCGA 1 cut(s) 936
RsaI GTAC 4 cut(s) 73, 267, 543, 564
RsaNI GTAC 4 cut(s) 72, 266, 542, 563
SaqAI TTAA 7 cut(s) 123, 227, 399, 704, 725, 942, 958
Sau3AI GATC 6 cut(s) 381, 430, 578, 631, 667, 763
Sau96I GGNCC 1 cut(s) 653
SchI GAGTC 2 cut(s) 6, 415
SduI GDGCHC 1 cut(s) 329
SetI ASST 8 cut(s) 122, 219, 300, 346, 543, 612, 684, 934
SfaNI GCATC 6 cut(s) 13, 193, 233, 403, 739, 889
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 1 cut(s) 653
SmiI ATTTAAAT 1 cut(s) 705
SsiI CCGC 3 cut(s) 8, 200, 906
SspMI CTAG 2 cut(s) 114, 389
StyI CCWWGG 3 cut(s) 162, 181, 624
SwaI ATTTAAAT 1 cut(s) 705
TaaI ACNGT 1 cut(s) 71
TaiI ACGT 1 cut(s) 684
TaqI TCGA 1 cut(s) 15
TfiI GAWTC 2 cut(s) 17, 617
Tru1I TTAA 7 cut(s) 123, 227, 399, 704, 725, 942, 958
Tru9I TTAA 7 cut(s) 123, 227, 399, 704, 725, 942, 958
TseFI GTSAC 2 cut(s) 23, 839
Tsp45I GTSAC 2 cut(s) 23, 839
TspDTI ATGAA 4 cut(s) 662, 726, 852, 936
VpaK11BI GGWCC 1 cut(s) 653
XapI RAATTY 4 cut(s) 504, 713, 797, 817
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 2 cut(s) 114, 389
Zsp2I ATGCAT 2 cut(s) 6, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.