RLG00000033606

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003266
Physical Location & Seq
Forward (+)
29561047 .. 29562214
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033606

Sequence Viewer

Length: 1104 bp
ATGACCAAAAAGCAAAATACGAGCACCCGGGAGAAGGGAATATTAACCTCGGGTTCAGTTTGGGAATCGCTTCAAAGGGACCTTCTGGATTTGATACTAGAAAAGTTGCTAAAAATCGATGACTACATTCGGTTTGGCGTGGTTTGCCGCAAGCATTGGCAATTAGTTGCTTTAAATCAGCAGCAGCAACGCTTCGGATCACGTCACAAACAGCCTCCTCTAATGATTCTTACAGAACAACAACAGAGCGGCGAAAGAAGCATGACCTTGCGTTGTGCTACACAAGACAAGACTTACAAGTTTCAGCTGAAACTGAATAATGTACCTAATTACGATAACATGAAGTATTGTGAATCTTCCCATGGTTGGTTGGCTTATGCACAAGGCAATTTGGTAGCAATAACCCTCTTAAACCCTTTCAGCGGACGCACCATTACCCTTCCACCGGTACCAGCAACCGTTCCACCAGTGCGAGCAACAGGTTCCTACTACATCAAGAAAGTTGTACTGTCTGCTGACCCTTGTTCGTTCCCTGATGATTATCAAGTTCTAGTAATTTATAACGAGCGTGTTTATAATGCTGAGACCAGGATAGCCCATTTTAAGTCGGGGGAAGATACTTGGACTCTCGTAGACTGTGGGACGACTATCAGATTCACCCATGCAGTTTGCTACAAAGAAAAAGAATTACTCAACTCGTGTGGTGAACAATTTGTGCGCCGACATGAGGTTATGAATACATTCCTTGTGGAATCGTCAAAGGGAGATCTATTGATGGTTAGGAGGTTTCACTTGCTTGATATTGATCGTTGGCTGATCGTCACGGTTGATAAATTGATATATGATTTTGGTGATGAACTCACACCCATACCCATTGAGAGTATTGGAAGTGATGCTTTGTTTTTGGATCGAAATCAATCTATTTGTGTGTCTGCCTTGGACTTTCCAGAGTGTCATCCAAATTCTATATACTTCACCGATGGTATTTTCAGCTTGGAAAGCAGACAAATGCATTGGTTTGACTCCTTAAAGCCAACAATGTCAGCAATATGGATTTCGCCAACGTTATGTGTTGAAAATCAACCTCTACCAACATGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

368

Amino Acids

42.15

Weight (kDa)

6.51

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 95 - 340 1.6e-35 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 561, 576
Acc65I GGTACC 1 cut(s) 448
AccB1I GGYRCC 1 cut(s) 448
AccBSI CCGCTC 1 cut(s) 249
AccI GTMKAC 1 cut(s) 633
AciI CCGC 3 cut(s) 148, 249, 423
AclI AACGTT 1 cut(s) 1064
AclWI GGATC 2 cut(s) 205, 915
AcsI RAATTY 1 cut(s) 961
AfaI GTAC 3 cut(s) 324, 450, 507
AfiI CCNNNNNNNGG 5 cut(s) 34, 366, 422, 445, 727
AgeI ACCGGT 1 cut(s) 445
AgsI TTSAA 2 cut(s) 74, 1076
AjiI CACGTC 1 cut(s) 203
AjnI CCWGG 1 cut(s) 587
AluBI AGCT 2 cut(s) 307, 993
AluI AGCT 2 cut(s) 307, 993
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 578
AlwI GGATC 2 cut(s) 205, 915
Ama87I CYCGRG 2 cut(s) 27, 49
ApeKI GCWGC 2 cut(s) 181, 184
ApoI RAATTY 1 cut(s) 961
AsiGI ACCGGT 1 cut(s) 445
Asp700I GAANNNNTTC 2 cut(s) 69, 740
Asp718I GGTACC 1 cut(s) 448
AspLEI GCGC 1 cut(s) 720
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 2 cut(s) 28, 29
AsuHPI GGTGA 4 cut(s) 649, 716, 863, 967
AvaI CYCGRG 2 cut(s) 27, 49
AvaII GGWCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 448
BauI CACGAG 1 cut(s) 697
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 2 cut(s) 193, 196
BccI CCATC 2 cut(s) 769, 974
BciT130I CCWGG 1 cut(s) 589
BcnI CCSGG 2 cut(s) 28, 29
BcoDI GTCTC 1 cut(s) 578
BfaI CTAG 2 cut(s) 98, 551
BglII AGATCT 1 cut(s) 766
BisI GCNGC 4 cut(s) 148, 182, 185, 250
BlsI GCNGC 4 cut(s) 149, 183, 186, 251
Bme1390I CCNGG 3 cut(s) 28, 29, 589
Bme18I GGWCC 1 cut(s) 79
BmeT110I CYCGRG 2 cut(s) 27, 49
BmgBI CACGTC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 3 cut(s) 80, 450, 484
BmrFI CCNGG 3 cut(s) 28, 29, 589
BmsI GCATC 1 cut(s) 883
BpuMI CCSGG 2 cut(s) 28, 29
Bsa29I ATCGAT 1 cut(s) 117
BsaBI GATNNNNATC 3 cut(s) 540, 804, 912
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 4 cut(s) 27, 48, 361, 936
BsaWI WCCGGW 1 cut(s) 445
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 366, 422, 445, 727
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 467
Bse8I GATNNNNATC 3 cut(s) 540, 804, 912
BseBI CCWGG 1 cut(s) 589
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 4 cut(s) 27, 48, 361, 936
BseGI GGATG 1 cut(s) 955
BseJI GATNNNNATC 3 cut(s) 540, 804, 912
BseLI CCNNNNNNNGG 5 cut(s) 34, 366, 422, 445, 727
BseMII CTCAG 1 cut(s) 573
BseNI ACTGG 1 cut(s) 467
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 193, 196
BshNI GGYRCC 1 cut(s) 448
BshTI ACCGGT 1 cut(s) 445
BshVI ATCGAT 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 26
BsiHKCI CYCGRG 2 cut(s) 27, 49
BsiSI CCGG 2 cut(s) 28, 446
BslFI GGGAC 2 cut(s) 92, 655
BslI CCNNNNNNNGG 5 cut(s) 34, 366, 422, 445, 727
BsmAI GTCTC 1 cut(s) 578
BsmFI GGGAC 2 cut(s) 92, 655
Bso31I GGTCTC 1 cut(s) 578
BsoBI CYCGRG 2 cut(s) 27, 49
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 5 cut(s) 197, 766, 805, 816, 907
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 3 cut(s) 148, 249, 423
BspCNI CTCAG 1 cut(s) 574
BspDI ATCGAT 1 cut(s) 117
BspLI GGNNCC 3 cut(s) 80, 450, 484
BspPI GGATC 2 cut(s) 205, 915
BspT107I GGYRCC 1 cut(s) 448
BspTNI GGTCTC 1 cut(s) 578
BsrBI CCGCTC 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 1 cut(s) 467
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 4 cut(s) 27, 48, 361, 936
BssMI GATC 5 cut(s) 197, 766, 805, 816, 907
BssSI CACGAG 1 cut(s) 697
BssT1I CCWWGG 2 cut(s) 361, 936
Bst2BI CACGAG 1 cut(s) 697
Bst2UI CCWGG 1 cut(s) 589
Bst4CI ACNGT 4 cut(s) 460, 510, 638, 826
BstC8I GCNNGC 2 cut(s) 152, 474
BstDEI CTNAG 1 cut(s) 582
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 1 cut(s) 955
BstHHI GCGC 1 cut(s) 720
BstKTI GATC 5 cut(s) 200, 769, 808, 819, 910
BstMAI GTCTC 1 cut(s) 578
BstMBI GATC 5 cut(s) 197, 766, 805, 816, 907
BstMWI GCNNNNNNNGC 3 cut(s) 144, 258, 999
BstNI CCWGG 1 cut(s) 589
BstNSI RCATGY 1 cut(s) 1098
BstSCI CCNGG 3 cut(s) 26, 27, 587
BstV1I GCAGC 2 cut(s) 193, 196
BstX2I RGATCY 1 cut(s) 766
BstYI RGATCY 1 cut(s) 766
Bsu15I ATCGAT 1 cut(s) 117
BsuTUI ATCGAT 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 361
BtrI CACGTC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 955
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 2 cut(s) 152, 474
CfoI GCGC 1 cut(s) 720
Cfr10I RCCGGY 1 cut(s) 445
Cfr13I GGNCC 1 cut(s) 79
Cfr9I CCCGGG 1 cut(s) 27
ClaI ATCGAT 1 cut(s) 117
CseI GACGC 1 cut(s) 435
Csp6I GTAC 3 cut(s) 323, 449, 506
CspAI ACCGGT 1 cut(s) 445
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviAII CATG 6 cut(s) 262, 340, 362, 662, 725, 1095
CviJI RGCY 7 cut(s) 214, 307, 374, 596, 814, 993, 1033
CviKI_1 RGCY 7 cut(s) 214, 307, 374, 596, 814, 993, 1033
CviQI GTAC 3 cut(s) 323, 449, 506
DdeI CTNAG 1 cut(s) 582
DpnI GATC 5 cut(s) 199, 768, 807, 818, 909
DpnII GATC 5 cut(s) 197, 766, 805, 816, 907
DraI TTTAAA 1 cut(s) 174
Eco130I CCWWGG 2 cut(s) 361, 936
Eco31I GGTCTC 1 cut(s) 578
Eco47I GGWCC 1 cut(s) 79
Eco88I CYCGRG 2 cut(s) 27, 49
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 587
EcoT14I CCWWGG 2 cut(s) 361, 936
EcoT22I ATGCAT 1 cut(s) 1014
ErhI CCWWGG 2 cut(s) 361, 936
FaeI CATG 6 cut(s) 265, 343, 365, 665, 728, 1098
FalI AAGNNNNNCTT 2 cut(s) 880, 912
FaqI GGGAC 2 cut(s) 92, 655
FatI CATG 6 cut(s) 261, 339, 361, 661, 724, 1094
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 4 cut(s) 148, 182, 185, 250
FokI GGATG 1 cut(s) 942
Fsp4HI GCNGC 4 cut(s) 148, 182, 185, 250
FspBI CTAG 2 cut(s) 98, 551
GlaI GCGC 1 cut(s) 719
GluI GCNGC 4 cut(s) 148, 182, 185, 250
HapII CCGG 2 cut(s) 28, 446
HgaI GACGC 1 cut(s) 435
HhaI GCGC 1 cut(s) 720
Hin1II CATG 6 cut(s) 265, 343, 365, 665, 728, 1098
Hin6I GCGC 1 cut(s) 718
HinP1I GCGC 1 cut(s) 718
HinfI GANTC 7 cut(s) 65, 226, 353, 625, 654, 752, 1022
HpaII CCGG 2 cut(s) 28, 446
HphI GGTGA 4 cut(s) 649, 716, 863, 967
Hpy166II GTNNAC 2 cut(s) 634, 707
Hpy188I TCNGA 2 cut(s) 197, 653
Hpy188III TCNNGA 3 cut(s) 86, 496, 947
Hpy8I GTNNAC 2 cut(s) 634, 707
HpyAV CCTTC 3 cut(s) 28, 92, 449
HpyCH4III ACNGT 4 cut(s) 460, 510, 638, 826
HpyCH4IV ACGT 2 cut(s) 202, 1064
HpyCH4V TGCA 4 cut(s) 380, 665, 1012, 1098
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 258, 999
HpyF3I CTNAG 1 cut(s) 582
HpySE526I ACGT 2 cut(s) 202, 1064
Hsp92II CATG 6 cut(s) 265, 343, 365, 665, 728, 1098
HspAI GCGC 1 cut(s) 718
KpnI GGTACC 1 cut(s) 452
Kzo9I GATC 5 cut(s) 197, 766, 805, 816, 907
Lsp1109I GCAGC 2 cut(s) 193, 196
LweI GCATC 1 cut(s) 883
MaeI CTAG 2 cut(s) 98, 551
MaeII ACGT 2 cut(s) 202, 1064
MaeIII GTNAC 2 cut(s) 203, 820
MalI GATC 5 cut(s) 199, 768, 807, 818, 909
MbiI CCGCTC 1 cut(s) 249
MboI GATC 5 cut(s) 197, 766, 805, 816, 907
MboII GAAGA 2 cut(s) 348, 626
MflI RGATCY 1 cut(s) 766
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 8 cut(s) 161, 328, 388, 555, 686, 710, 833, 961
MlyI GAGTC 2 cut(s) 619, 1016
MnlI CCTC 7 cut(s) 58, 225, 228, 416, 721, 777, 1095
Mph1103I ATGCAT 1 cut(s) 1014
MroXI GAANNNNTTC 2 cut(s) 69, 740
MseI TTAA 5 cut(s) 44, 173, 410, 603, 1028
MspA1I CMGCKG 2 cut(s) 307, 423
MspI CCGG 2 cut(s) 28, 446
MspR9I CCNGG 3 cut(s) 28, 29, 589
MvaI CCWGG 1 cut(s) 589
MwoI GCNNNNNNNGC 3 cut(s) 144, 258, 999
NciI CCSGG 2 cut(s) 28, 29
NcoI CCATGG 1 cut(s) 361
NdeII GATC 5 cut(s) 197, 766, 805, 816, 907
NlaIII CATG 6 cut(s) 265, 343, 365, 665, 728, 1098
NlaIV GGNNCC 3 cut(s) 80, 450, 484
NmuCI GTSAC 2 cut(s) 203, 820
NsiI ATGCAT 1 cut(s) 1014
NspI RCATGY 1 cut(s) 1098
PdmI GAANNNNTTC 2 cut(s) 69, 740
PfeI GAWTC 5 cut(s) 65, 226, 353, 654, 752
PinAI ACCGGT 1 cut(s) 445
PkrI GCNGC 4 cut(s) 149, 183, 186, 251
PleI GAGTC 2 cut(s) 619, 1016
PpsI GAGTC 2 cut(s) 619, 1016
PpuMI RGGWCCY 1 cut(s) 79
PsiI TTATAA 2 cut(s) 561, 576
Psp1406I AACGTT 1 cut(s) 1064
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 587
PspGI CCWGG 1 cut(s) 587
PspN4I GGNNCC 3 cut(s) 80, 450, 484
PspPI GGNCC 1 cut(s) 79
PspPPI RGGWCCY 1 cut(s) 79
PsuI RGATCY 1 cut(s) 766
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 3 cut(s) 324, 450, 507
RsaNI GTAC 3 cut(s) 323, 449, 506
SaqAI TTAA 5 cut(s) 44, 173, 410, 603, 1028
SatI GCNGC 4 cut(s) 148, 182, 185, 250
Sau3AI GATC 5 cut(s) 197, 766, 805, 816, 907
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 2 cut(s) 619, 1016
ScrFI CCNGG 3 cut(s) 28, 29, 589
SduI GDGCHC 1 cut(s) 26
SfaNI GCATC 1 cut(s) 883
SinI GGWCC 1 cut(s) 79
SmaI CCCGGG 1 cut(s) 29
Sse9I AATT 8 cut(s) 161, 328, 388, 555, 686, 710, 833, 961
SsiI CCGC 3 cut(s) 148, 249, 423
SspI AATATT 1 cut(s) 42
SspMI CTAG 2 cut(s) 98, 551
StyD4I CCNGG 3 cut(s) 26, 27, 587
StyI CCWWGG 2 cut(s) 361, 936
TaaI ACNGT 4 cut(s) 460, 510, 638, 826
TaiI ACGT 2 cut(s) 205, 1067
TaqI TCGA 2 cut(s) 117, 910
TasI AATT 8 cut(s) 161, 328, 388, 555, 686, 710, 833, 961
TatI WGTACW 1 cut(s) 505
TauI GCSGC 2 cut(s) 150, 252
TfiI GAWTC 5 cut(s) 65, 226, 353, 654, 752
Tru1I TTAA 5 cut(s) 44, 173, 410, 603, 1028
Tru9I TTAA 5 cut(s) 44, 173, 410, 603, 1028
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 2 cut(s) 203, 820
TseI GCWGC 2 cut(s) 181, 184
Tsp45I GTSAC 2 cut(s) 203, 820
TspDTI ATGAA 3 cut(s) 356, 749, 870
TspMI CCCGGG 1 cut(s) 27
TspRI CASTG 1 cut(s) 474
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 961
XceI RCATGY 1 cut(s) 1098
XmaI CCCGGG 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 633
XmnI GAANNNNTTC 2 cut(s) 69, 740
XspI CTAG 2 cut(s) 98, 551
Zsp2I ATGCAT 1 cut(s) 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.