Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003266

Physical Location & Seq

Genomic Coordinates Reverse (-)

14460547 .. 14461802

Gene Structure 1256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30031

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGGGAAGAATGGAACTAAAAGACAAAAAAAAAATCTTCACGGTTGGGGTTCGTTTCCAAGTGAGCTTCTTGATTCGATACTCGAAAGATTGACATCCATCTTCGACTACATCCAATTCAGTTTCGTTTGCAAGCATTGGCGAAGGGTTGCCTTAAATCAGAAGGAGCAGCGCCTCAAATCTTGTCACAAACAGCTAATTCCTTTGTTGCTGTTGATTCCAACCAAGAACAGCAACCAAAGACGTGTCTTGTACAGTGTCACACAAGGTAAGGTTGTTCGTAGCTTTAATGTCCCTAATCATCATGACGACGATAAGTGGTTGTGTGGTTCTTCCCATGGTTGGTTGGCTTATGCCGACGGCAATTTCCTAGTAACCCTAGTAAACCCTTTCACCAGAGGCACCATTAGGCTTCCACAAGTCATGGAAGTCGGGAAGTCCAGACCTAAATGCTACTCGTTTGAGATTAGTAAAGTTGATGATGATGGGGTTACCAAGGAACTAGCCCATTTTAAGTCCGGGGACGATGCCTGGACTCGCTCCGATAATCAAATGATCCATGGACTTGATATCCTTGATGTAATTTATTACAAAGGCCGATTTGTAGCTTTAACTAGTTTGGATTCTGATCCCGGCCATAATGCTAGTAAGTTTCATCCAAGCATAGGGTTCCTATCACCCCCACCAGAAGCTTGTAATAAGTCAACATATCTTGTCAAATCGACCTGGGAGGATCTTTTGCTCGTAAATATAACTAATTCTTCCAGCATCAAGATTTTCAAGCTGGGTAGTTCGTGTGGCGAATGGGTAAAGATAGAGAGCATTGGAACTGATGCTTTGTTTCTGGGTAACATGCAATCCATGTGTGTTTCTGCTTCATACTCGGGGTGTCATCCAAATTCGATTTACTTCATGGAATGCGTTGTCAACTTAAATACCAGAAAAGAGACCAGGCATGACGAGTTACCAGAGCGGACACGACCAATAACATGGATTGCACCCACTGTGGCATTTTCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

340

Amino Acids

38.5

Weight (kDa)

8.96

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	18 - 54	7.9e-06	F-box domain
Beta-prop_KIB1-4	PF03478	84 - 312	1.3e-35	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12381
malus_domestica	MD05G1250900.v1.1 MD10G1231500.v1.1
prunus_persica	Prupe.6G183700_v2.0.a1 Prupe.6G184200_v2.0.a1 Prupe.6G184600_v2.0.a1 Prupe.8G064600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020191 RchiOBHm_Chr5g0020201
rosa_laevigata	RLG00000032508 RLG00000032510 RLG00000032511 RLG00000032585 RLG00000033606
rosa_multiflora	Rmu_sc0002087.1_g000011 Rmu_sc0002087.1_g000012 Rmu_ssc0000244.1_g000031
rosa_roxburghii	Rroxscaffold_1G00057970 Rroxscaffold_1G00058000 Rroxscaffold_1G00058010
rosa_rugosa	Rorug05G0057600 Rorug05G0057700 Rorug05G0057800
rosa_samantha	Rh5AG148000 Rh5AG148100 Rh5BG147600 Rh5BG147700 Rh5BG147800 Rh5CG159000 Rh5CG159100 Rh5CG274700 Rh5DG146800 Rh5DG146900 Rh5DG153600 Rh5DG252100
rosa_wichuraiana	Rw5G013090 Rw5G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	401
AccBSI	CCGCTC	1 cut(s)	973
AciI	CCGC	1 cut(s)	973
AclWI	GGATC	3 cut(s)	550, 623, 741
AcoI	YGGCCR	1 cut(s)	634
AcsI	RAATTY	1 cut(s)	898
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	342, 665
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	781
AhlI	ACTAGT	1 cut(s)	614
AjiI	CACGTC	1 cut(s)	245
AjnI	CCWGG	3 cut(s)	530, 725, 950
AluBI	AGCT	6 cut(s)	67, 196, 285, 608, 692, 784
AluI	AGCT	6 cut(s)	67, 196, 285, 608, 692, 784
Alw26I	GTCTC	1 cut(s)	941
AlwI	GGATC	3 cut(s)	550, 623, 741
Ama87I	CYCGRG	1 cut(s)	883
AoxI	GGCC	2 cut(s)	595, 634
ApeKI	GCWGC	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	898
AspLEI	GCGC	1 cut(s)	174
AsuC2I	CCSGG	2 cut(s)	520, 633
AsuHPI	GGTGA	2 cut(s)	385, 669
AvaI	CYCGRG	1 cut(s)	883
BanI	GGYRCC	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	2 cut(s)	107, 479
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	3 cut(s)	532, 727, 952
BcnI	CCSGG	2 cut(s)	520, 633
BcoDI	GTCTC	1 cut(s)	941
BcuI	ACTAGT	1 cut(s)	614
BfaI	CTAG	5 cut(s)	371, 380, 503, 615, 645
BfoI	RGCGCY	1 cut(s)	175
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	5 cut(s)	520, 532, 633, 727, 952
BmeT110I	CYCGRG	1 cut(s)	883
BmgBI	CACGTC	1 cut(s)	245
BmiI	GGNNCC	2 cut(s)	403, 671
BmrFI	CCNGG	5 cut(s)	520, 532, 633, 727, 952
BmsI	GCATC	3 cut(s)	517, 777, 823
BpuMI	CCSGG	2 cut(s)	520, 633
BsaBI	GATNNNNATC	2 cut(s)	94, 627
BsaI	GGTCTC	1 cut(s)	941
BsaJI	CCNNGG	5 cut(s)	337, 495, 519, 559, 726
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 665
Bse8I	GATNNNNATC	2 cut(s)	94, 627
BseBI	CCWGG	3 cut(s)	532, 727, 952
BseDI	CCNNGG	5 cut(s)	337, 495, 519, 559, 726
BseGI	GGATG	4 cut(s)	95, 111, 655, 892
BseJI	GATNNNNATC	2 cut(s)	94, 627
BseLI	CCNNNNNNNGG	2 cut(s)	342, 665
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	784
BshFI	GGCC	2 cut(s)	597, 636
BshNI	GGYRCC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	883
BsiSI	CCGG	2 cut(s)	519, 633
BslFI	GGGAC	2 cut(s)	278, 536
BslI	CCNNNNNNNGG	2 cut(s)	342, 665
BsmAI	GTCTC	1 cut(s)	941
BsmFI	GGGAC	2 cut(s)	278, 536
BsmI	GAATGC	1 cut(s)	923
BsnI	GGCC	2 cut(s)	597, 636
Bso31I	GGTCTC	1 cut(s)	941
BsoBI	CYCGRG	1 cut(s)	883
Bsp1407I	TGTACA	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	555, 628, 733
Bsp19I	CCATGG	2 cut(s)	337, 559
BspACI	CCGC	1 cut(s)	973
BspANI	GGCC	2 cut(s)	597, 636
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	403, 671
BspPI	GGATC	3 cut(s)	550, 623, 741
BspT107I	GGYRCC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	941
BsrBI	CCGCTC	1 cut(s)	973
BsrGI	TGTACA	1 cut(s)	252
BssECI	CCNNGG	5 cut(s)	337, 495, 519, 559, 726
BssMI	GATC	3 cut(s)	555, 628, 733
BssT1I	CCWWGG	3 cut(s)	337, 495, 559
Bst2UI	CCWGG	3 cut(s)	532, 727, 952
Bst4CI	ACNGT	3 cut(s)	44, 257, 1006
BstAUI	TGTACA	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	134
BstDSI	CCRYGG	2 cut(s)	337, 559
BstEII	GGTNACC	1 cut(s)	490
BstF5I	GGATG	4 cut(s)	95, 111, 655, 892
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	3 cut(s)	558, 631, 736
BstMAI	GTCTC	1 cut(s)	941
BstMBI	GATC	3 cut(s)	555, 628, 733
BstNI	CCWGG	3 cut(s)	532, 727, 952
BstNSI	RCATGY	1 cut(s)	856
BstPI	GGTNACC	1 cut(s)	490
BstSCI	CCNGG	5 cut(s)	518, 530, 631, 725, 950
BstV1I	GCAGC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	733
BstXI	CCANNNNNNTGG	1 cut(s)	990
BstYI	RGATCY	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	597, 636
BtgI	CCRYGG	2 cut(s)	337, 559
BtrI	CACGTC	1 cut(s)	245
BtsCI	GGATG	4 cut(s)	95, 111, 655, 892
BtsIMutI	CAGTG	2 cut(s)	262, 1002
Cac8I	GCNNGC	1 cut(s)	134
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	9 cut(s)	305, 338, 424, 560, 853, 862, 913, 956, 990
CviQI	GTAC	1 cut(s)	253
DpnI	GATC	3 cut(s)	557, 630, 735
DpnII	GATC	3 cut(s)	555, 628, 733
EaeI	YGGCCR	1 cut(s)	634
Eco130I	CCWWGG	3 cut(s)	337, 495, 559
Eco31I	GGTCTC	1 cut(s)	941
Eco32I	GATATC	1 cut(s)	571
Eco88I	CYCGRG	1 cut(s)	883
Eco91I	GGTNACC	1 cut(s)	490
EcoO65I	GGTNACC	1 cut(s)	490
EcoRII	CCWGG	3 cut(s)	530, 725, 950
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	3 cut(s)	337, 495, 559
ErhI	CCWWGG	3 cut(s)	337, 495, 559
FaeI	CATG	9 cut(s)	308, 341, 427, 563, 856, 865, 916, 959, 993
FaqI	GGGAC	2 cut(s)	278, 536
FatI	CATG	9 cut(s)	304, 337, 423, 559, 852, 861, 912, 955, 989
FauNDI	CATATG	1 cut(s)	1019
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	4 cut(s)	82, 98, 642, 879
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	5 cut(s)	371, 380, 503, 615, 645
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	1 cut(s)	170
GsaI	CCCAGC	1 cut(s)	788
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	597, 636
HapII	CCGG	2 cut(s)	519, 633
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	9 cut(s)	308, 341, 427, 563, 856, 865, 916, 959, 993
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	2 cut(s)	705, 928
HindII	GTYRAC	2 cut(s)	705, 928
HindIII	AAGCTT	1 cut(s)	690
HinfI	GANTC	4 cut(s)	74, 217, 535, 623
HpaII	CCGG	2 cut(s)	519, 633
HphI	GGTGA	2 cut(s)	385, 669
Hpy166II	GTNNAC	3 cut(s)	385, 705, 928
Hpy188I	TCNGA	3 cut(s)	162, 544, 628
Hpy188III	TCNNGA	5 cut(s)	71, 305, 433, 441, 772
Hpy8I	GTNNAC	3 cut(s)	385, 705, 928
Hpy99I	CGWCG	2 cut(s)	314, 362
HpyAV	CCTTC	2 cut(s)	138, 157
HpyCH4III	ACNGT	3 cut(s)	44, 257, 1006
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	3 cut(s)	132, 856, 998
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	9 cut(s)	308, 341, 427, 563, 856, 865, 916, 959, 993
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	555, 628, 733
LmnI	GCTCC	2 cut(s)	166, 545
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	3 cut(s)	517, 777, 823
MaeI	CTAG	5 cut(s)	371, 380, 503, 615, 645
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	6 cut(s)	185, 259, 373, 490, 848, 963
MalI	GATC	3 cut(s)	557, 630, 735
MbiI	CCGCTC	1 cut(s)	973
MboI	GATC	3 cut(s)	555, 628, 733
MboII	GAAGA	5 cut(s)	19, 29, 94, 324, 753
MflI	RGATCY	1 cut(s)	733
MluCI	AATT	6 cut(s)	116, 198, 364, 582, 757, 898
MlyI	GAGTC	1 cut(s)	529
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	3 cut(s)	185, 392, 724
MseI	TTAA	5 cut(s)	155, 288, 513, 611, 932
MspI	CCGG	2 cut(s)	519, 633
MspR9I	CCNGG	5 cut(s)	520, 532, 633, 727, 952
Mva1269I	GAATGC	1 cut(s)	923
MvaI	CCWGG	3 cut(s)	532, 727, 952
NciI	CCSGG	2 cut(s)	520, 633
NcoI	CCATGG	2 cut(s)	337, 559
NdeI	CATATG	1 cut(s)	1019
NdeII	GATC	3 cut(s)	555, 628, 733
NlaIII	CATG	9 cut(s)	308, 341, 427, 563, 856, 865, 916, 959, 993
NlaIV	GGNNCC	2 cut(s)	403, 671
NmuCI	GTSAC	2 cut(s)	185, 259
NspI	RCATGY	1 cut(s)	856
PagI	TCATGA	1 cut(s)	304
PctI	GAATGC	1 cut(s)	923
PfeI	GAWTC	3 cut(s)	74, 217, 623
PkrI	GCNGC	1 cut(s)	171
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
Psp6I	CCWGG	3 cut(s)	530, 725, 950
PspEI	GGTNACC	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	784
PspGI	CCWGG	3 cut(s)	530, 725, 950
PspN4I	GGNNCC	2 cut(s)	403, 671
PsuI	RGATCY	1 cut(s)	733
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	5 cut(s)	155, 288, 513, 611, 932
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	3 cut(s)	555, 628, 733
SchI	GAGTC	1 cut(s)	529
ScrFI	CCNGG	5 cut(s)	520, 532, 633, 727, 952
SfaNI	GCATC	3 cut(s)	517, 777, 823
SpeI	ACTAGT	1 cut(s)	614
Sse9I	AATT	6 cut(s)	116, 198, 364, 582, 757, 898
SsiI	CCGC	1 cut(s)	973
SspMI	CTAG	5 cut(s)	371, 380, 503, 615, 645
StyD4I	CCNGG	5 cut(s)	518, 530, 631, 725, 950
StyI	CCWWGG	3 cut(s)	337, 495, 559
TaaI	ACNGT	3 cut(s)	44, 257, 1006
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	5 cut(s)	77, 84, 105, 722, 902
TasI	AATT	6 cut(s)	116, 198, 364, 582, 757, 898
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	3 cut(s)	74, 217, 623
Tru1I	TTAA	5 cut(s)	155, 288, 513, 611, 932
Tru9I	TTAA	5 cut(s)	155, 288, 513, 611, 932
TscAI	CASTG	2 cut(s)	262, 1009
TseFI	GTSAC	2 cut(s)	185, 259
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	2 cut(s)	185, 259
TspDTI	ATGAA	3 cut(s)	644, 867, 901
TspRI	CASTG	2 cut(s)	262, 1009
XapI	RAATTY	1 cut(s)	898
XceI	RCATGY	1 cut(s)	856
XspI	CTAG	5 cut(s)	371, 380, 503, 615, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.