Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003266

Physical Location & Seq

Genomic Coordinates Reverse (-)

14625505 .. 14626877

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG159100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGGAAGAATGGAACTAAAAGACAAAAAAAAAATCTTCACGGTTGGGGTTCGTTTCCAAGTGAGCTTCTTGATTCGATACTCGAAAGATTGACATCCATCTTCGACTACATCCAATTCAGTTTCGTTTGCAAGCATTGGCGAAGGGTTGCCTTAAATCAGAAGGAGCAGCGCCTCAAATCTTGTCACAAACAGCTAATTCCTTTGTTGCTGTTGATTCCAACCAAGAACAGCAACCAAAGACGTGTCTTGTACAGTGTCACACAAGGTAAGGTTGTTCGTAGCTTTAATGTCCCTAATCATCATGACGACGATAAGTGGTTGTGTGGTTCTTCCCATGGTTGGTTGGCTTATGCCGACGGCAATTTCCTAGTAACCCTAGTAAACCCTTTCACCAGAGGCACCATTAGGCTTCCACAAGTCATGGAAGTCGGGAAGTCCAGACCTAAATGCTACTCGTTTGAGATTAGTAAAGTTGTATTGTCTGCTAACCCTTGTTTGTTTCCTAATGATTATGAAGTTATTGTTATCTTTGAGGATGATGATGGGGTTACCAAGGAACTAGCCCATTTTAAGTCCGGGGACGATGCCTGGACTCGCTCCGATAATCAAATGATCCATGGACTTGATATCCTTGATGTAATTTATTACAAAGGCCGATTTGTAGCTTTAACTAGTTTGGATTCTGATCCCGGCCATAATGCTAGTAAGTTTCATCCAAGCATAGGGTTCCTATCACCCCCACCAGAAGCTTGTAATAAGTCAACATATCTTGTCAAATCGACCTGGGAGGATCTTTTGCTCGTAAATATAACTAATTCTTCCAGCATCAAGATTTTCAAGCTGGGTAGTTCGTGTGGCGAATGGGTAAAGATAGAGAGCATTGGAACTGATGCTTTGTTTCTGGGTAACATGCAATCCATGTGTGTTTCTGCTTCATACTCGGGGTGTCATCCAAATTCGATTTACTTCATGGAATGCGTTGTCAACTTAAATACCAGAAAAGAGACCAGGCATGACGAGTTACCAGAGCGGACACGACCAATAACATGGATTGCACCCACTGTGGCATTTTCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

360

Amino Acids

40.77

Weight (kDa)

8.59

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	18 - 54	8.5e-06	F-box domain
Beta-prop_KIB1-4	PF03478	84 - 332	1.5e-42	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12381
malus_domestica	MD05G1250900.v1.1 MD10G1231500.v1.1
prunus_persica	Prupe.6G183700_v2.0.a1 Prupe.6G184200_v2.0.a1 Prupe.6G184600_v2.0.a1 Prupe.8G064600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020191 RchiOBHm_Chr5g0020201
rosa_laevigata	RLG00000032508 RLG00000032510 RLG00000032511 RLG00000032585 RLG00000033606
rosa_multiflora	Rmu_sc0002087.1_g000011 Rmu_sc0002087.1_g000012 Rmu_ssc0000244.1_g000031
rosa_roxburghii	Rroxscaffold_1G00057970 Rroxscaffold_1G00058000 Rroxscaffold_1G00058010
rosa_rugosa	Rorug05G0057600 Rorug05G0057700 Rorug05G0057800
rosa_samantha	Rh5AG148000 Rh5AG148100 Rh5BG147600 Rh5BG147700 Rh5BG147800 Rh5CG159000 Rh5CG159100 Rh5CG274700 Rh5DG146800 Rh5DG146900 Rh5DG153600 Rh5DG252100
rosa_wichuraiana	Rw5G013090 Rw5G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	401
AccBSI	CCGCTC	1 cut(s)	1033
AciI	CCGC	1 cut(s)	1033
AclWI	GGATC	3 cut(s)	610, 683, 801
AcoI	YGGCCR	1 cut(s)	694
AcsI	RAATTY	1 cut(s)	958
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	342, 725
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	841
AhlI	ACTAGT	1 cut(s)	674
AjiI	CACGTC	1 cut(s)	245
AjnI	CCWGG	3 cut(s)	590, 785, 1010
AluBI	AGCT	6 cut(s)	67, 196, 285, 668, 752, 844
AluI	AGCT	6 cut(s)	67, 196, 285, 668, 752, 844
Alw26I	GTCTC	1 cut(s)	1001
AlwI	GGATC	3 cut(s)	610, 683, 801
Ama87I	CYCGRG	1 cut(s)	943
AoxI	GGCC	2 cut(s)	655, 694
ApeKI	GCWGC	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	958
AspLEI	GCGC	1 cut(s)	174
AsuC2I	CCSGG	2 cut(s)	580, 693
AsuHPI	GGTGA	2 cut(s)	385, 729
AvaI	CYCGRG	1 cut(s)	943
BanI	GGYRCC	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	2 cut(s)	107, 539
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	3 cut(s)	592, 787, 1012
BcnI	CCSGG	2 cut(s)	580, 693
BcoDI	GTCTC	1 cut(s)	1001
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	5 cut(s)	371, 380, 563, 675, 705
BfoI	RGCGCY	1 cut(s)	175
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	5 cut(s)	580, 592, 693, 787, 1012
BmeT110I	CYCGRG	1 cut(s)	943
BmgBI	CACGTC	1 cut(s)	245
BmiI	GGNNCC	2 cut(s)	403, 731
BmrFI	CCNGG	5 cut(s)	580, 592, 693, 787, 1012
BmsI	GCATC	3 cut(s)	577, 837, 883
BpuMI	CCSGG	2 cut(s)	580, 693
BsaBI	GATNNNNATC	2 cut(s)	94, 687
BsaI	GGTCTC	1 cut(s)	1001
BsaJI	CCNNGG	5 cut(s)	337, 555, 579, 619, 786
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 725
Bse8I	GATNNNNATC	2 cut(s)	94, 687
BseBI	CCWGG	3 cut(s)	592, 787, 1012
BseDI	CCNNGG	5 cut(s)	337, 555, 579, 619, 786
BseGI	GGATG	5 cut(s)	95, 111, 544, 715, 952
BseJI	GATNNNNATC	2 cut(s)	94, 687
BseLI	CCNNNNNNNGG	2 cut(s)	342, 725
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	844
BshFI	GGCC	2 cut(s)	657, 696
BshNI	GGYRCC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	943
BsiSI	CCGG	2 cut(s)	579, 693
BslFI	GGGAC	2 cut(s)	278, 596
BslI	CCNNNNNNNGG	2 cut(s)	342, 725
BsmAI	GTCTC	1 cut(s)	1001
BsmFI	GGGAC	2 cut(s)	278, 596
BsmI	GAATGC	1 cut(s)	983
BsnI	GGCC	2 cut(s)	657, 696
Bso31I	GGTCTC	1 cut(s)	1001
BsoBI	CYCGRG	1 cut(s)	943
Bsp1407I	TGTACA	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	615, 688, 793
Bsp19I	CCATGG	2 cut(s)	337, 619
BspACI	CCGC	1 cut(s)	1033
BspANI	GGCC	2 cut(s)	657, 696
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	403, 731
BspPI	GGATC	3 cut(s)	610, 683, 801
BspT107I	GGYRCC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	1001
BsrBI	CCGCTC	1 cut(s)	1033
BsrGI	TGTACA	1 cut(s)	252
BssECI	CCNNGG	5 cut(s)	337, 555, 579, 619, 786
BssMI	GATC	3 cut(s)	615, 688, 793
BssT1I	CCWWGG	3 cut(s)	337, 555, 619
Bst2UI	CCWGG	3 cut(s)	592, 787, 1012
Bst4CI	ACNGT	3 cut(s)	44, 257, 1066
BstAUI	TGTACA	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	134
BstDSI	CCRYGG	2 cut(s)	337, 619
BstEII	GGTNACC	1 cut(s)	550
BstF5I	GGATG	5 cut(s)	95, 111, 544, 715, 952
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	3 cut(s)	618, 691, 796
BstMAI	GTCTC	1 cut(s)	1001
BstMBI	GATC	3 cut(s)	615, 688, 793
BstNI	CCWGG	3 cut(s)	592, 787, 1012
BstNSI	RCATGY	1 cut(s)	916
BstPI	GGTNACC	1 cut(s)	550
BstSCI	CCNGG	5 cut(s)	578, 590, 691, 785, 1010
BstV1I	GCAGC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	793
BstXI	CCANNNNNNTGG	1 cut(s)	1050
BstYI	RGATCY	1 cut(s)	793
BsuRI	GGCC	2 cut(s)	657, 696
BtgI	CCRYGG	2 cut(s)	337, 619
BtrI	CACGTC	1 cut(s)	245
BtsCI	GGATG	5 cut(s)	95, 111, 544, 715, 952
BtsIMutI	CAGTG	2 cut(s)	262, 1062
Cac8I	GCNNGC	1 cut(s)	134
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	9 cut(s)	305, 338, 424, 620, 913, 922, 973, 1016, 1050
CviQI	GTAC	1 cut(s)	253
DpnI	GATC	3 cut(s)	617, 690, 795
DpnII	GATC	3 cut(s)	615, 688, 793
EaeI	YGGCCR	1 cut(s)	694
Eco130I	CCWWGG	3 cut(s)	337, 555, 619
Eco31I	GGTCTC	1 cut(s)	1001
Eco32I	GATATC	1 cut(s)	631
Eco88I	CYCGRG	1 cut(s)	943
Eco91I	GGTNACC	1 cut(s)	550
EcoO65I	GGTNACC	1 cut(s)	550
EcoRII	CCWGG	3 cut(s)	590, 785, 1010
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	3 cut(s)	337, 555, 619
ErhI	CCWWGG	3 cut(s)	337, 555, 619
FaeI	CATG	9 cut(s)	308, 341, 427, 623, 916, 925, 976, 1019, 1053
FaqI	GGGAC	2 cut(s)	278, 596
FatI	CATG	9 cut(s)	304, 337, 423, 619, 912, 921, 972, 1015, 1049
FauNDI	CATATG	1 cut(s)	1079
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	5 cut(s)	82, 98, 551, 702, 939
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	5 cut(s)	371, 380, 563, 675, 705
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	1 cut(s)	170
GsaI	CCCAGC	1 cut(s)	848
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	657, 696
HapII	CCGG	2 cut(s)	579, 693
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	9 cut(s)	308, 341, 427, 623, 916, 925, 976, 1019, 1053
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	2 cut(s)	765, 988
HindII	GTYRAC	2 cut(s)	765, 988
HindIII	AAGCTT	1 cut(s)	750
HinfI	GANTC	4 cut(s)	74, 217, 595, 683
HpaII	CCGG	2 cut(s)	579, 693
HphI	GGTGA	2 cut(s)	385, 729
Hpy166II	GTNNAC	3 cut(s)	385, 765, 988
Hpy188I	TCNGA	3 cut(s)	162, 604, 688
Hpy188III	TCNNGA	5 cut(s)	71, 305, 433, 441, 832
Hpy8I	GTNNAC	3 cut(s)	385, 765, 988
Hpy99I	CGWCG	2 cut(s)	314, 362
HpyAV	CCTTC	2 cut(s)	138, 157
HpyCH4III	ACNGT	3 cut(s)	44, 257, 1066
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	3 cut(s)	132, 916, 1058
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	9 cut(s)	308, 341, 427, 623, 916, 925, 976, 1019, 1053
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	615, 688, 793
LmnI	GCTCC	2 cut(s)	166, 605
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	3 cut(s)	577, 837, 883
MaeI	CTAG	5 cut(s)	371, 380, 563, 675, 705
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	6 cut(s)	185, 259, 373, 550, 908, 1023
MalI	GATC	3 cut(s)	617, 690, 795
MbiI	CCGCTC	1 cut(s)	1033
MboI	GATC	3 cut(s)	615, 688, 793
MboII	GAAGA	5 cut(s)	19, 29, 94, 324, 813
MflI	RGATCY	1 cut(s)	793
MluCI	AATT	6 cut(s)	116, 198, 364, 642, 817, 958
MlyI	GAGTC	1 cut(s)	589
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	4 cut(s)	185, 392, 529, 784
MseI	TTAA	5 cut(s)	155, 288, 573, 671, 992
MspI	CCGG	2 cut(s)	579, 693
MspR9I	CCNGG	5 cut(s)	580, 592, 693, 787, 1012
Mva1269I	GAATGC	1 cut(s)	983
MvaI	CCWGG	3 cut(s)	592, 787, 1012
NciI	CCSGG	2 cut(s)	580, 693
NcoI	CCATGG	2 cut(s)	337, 619
NdeI	CATATG	1 cut(s)	1079
NdeII	GATC	3 cut(s)	615, 688, 793
NlaIII	CATG	9 cut(s)	308, 341, 427, 623, 916, 925, 976, 1019, 1053
NlaIV	GGNNCC	2 cut(s)	403, 731
NmuCI	GTSAC	2 cut(s)	185, 259
NspI	RCATGY	1 cut(s)	916
PagI	TCATGA	1 cut(s)	304
PctI	GAATGC	1 cut(s)	983
PfeI	GAWTC	3 cut(s)	74, 217, 683
PkrI	GCNGC	1 cut(s)	171
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
Psp6I	CCWGG	3 cut(s)	590, 785, 1010
PspEI	GGTNACC	1 cut(s)	550
PspFI	CCCAGC	1 cut(s)	844
PspGI	CCWGG	3 cut(s)	590, 785, 1010
PspN4I	GGNNCC	2 cut(s)	403, 731
PsuI	RGATCY	1 cut(s)	793
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	5 cut(s)	155, 288, 573, 671, 992
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	3 cut(s)	615, 688, 793
SchI	GAGTC	1 cut(s)	589
ScrFI	CCNGG	5 cut(s)	580, 592, 693, 787, 1012
SfaNI	GCATC	3 cut(s)	577, 837, 883
SpeI	ACTAGT	1 cut(s)	674
Sse9I	AATT	6 cut(s)	116, 198, 364, 642, 817, 958
SsiI	CCGC	1 cut(s)	1033
SspMI	CTAG	5 cut(s)	371, 380, 563, 675, 705
StyD4I	CCNGG	5 cut(s)	578, 590, 691, 785, 1010
StyI	CCWWGG	3 cut(s)	337, 555, 619
TaaI	ACNGT	3 cut(s)	44, 257, 1066
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	5 cut(s)	77, 84, 105, 782, 962
TasI	AATT	6 cut(s)	116, 198, 364, 642, 817, 958
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	3 cut(s)	74, 217, 683
Tru1I	TTAA	5 cut(s)	155, 288, 573, 671, 992
Tru9I	TTAA	5 cut(s)	155, 288, 573, 671, 992
TscAI	CASTG	2 cut(s)	262, 1069
TseFI	GTSAC	2 cut(s)	185, 259
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	2 cut(s)	185, 259
TspDTI	ATGAA	4 cut(s)	531, 704, 927, 961
TspRI	CASTG	2 cut(s)	262, 1069
XapI	RAATTY	1 cut(s)	958
XceI	RCATGY	1 cut(s)	916
XspI	CTAG	5 cut(s)	371, 380, 563, 675, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.