Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003266

Physical Location & Seq

Genomic Coordinates Forward (+)

19310642 .. 19311856

Gene Structure 1215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G184600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGAAGATGCCCCAACCTTAGTTTCAGGCTGGGCATGGCTTCCAAGCATCATTCTGGATTTGATTCTCGAAAAGTTGATCCCAATCTCTGACTATATCCGATTTAGTGCGGTTTGCAAGCATTGGCAATCAGTCGCTTTACATCGCAAGAAGCAGCGCATCAAATCATGTCACAAGCAGATTCCTATGCTCATAATTCCCACCATAGACGGTAGCAGCGAAAGGCGTGGCTTGTATAGTGTGACACAAGGTAAGACTTGTAGCTTTGAGTTGAACGTGTATTACAGTAAGAGGTTCTGTGGTTCTTCCCATGGTTGGTTGGCCTGCGTGGATGAGAATCTGGTAGTAACCCTCTTAAACCCTTTTACTGGGCGTACCATTAGCCTTCCACCAGTCCCCAAATCCACTTGGAGATCGACGTTAGCTTATAGATGTGATTACTACATTAATAAAGTTGTATTGTCTGCAGACCCTTCTTTTCTTCCTAATGACTATGAAGTATTGGTCATCTATGATGGCTATGGGAAACAAATAGCCCATTTTAAATCAGGGGATGATGCTTGGACTAGCATAGATCAAGTGATCGGATTCGATGATGTAATTTATTATAAAGGCCAGTTTCTAGGTGTTAGTTTGGGTGGTAGTGTTTTTTCGATGAATGTTAGCAGGGATCAAACTATTAAACCCCATGTAAGCTTACTTGTGCCAATGGATCCAGGCACTGACAATAAAACATACCTTGTGCAATCATCCCAGGGAGATCTTATGCTGGTTAGGAAGTTCAAACGAGTAAATTATTGTAAGCGGTTTACGAAGTCTCTCCACTTCAAAATTTTCAAGTTTGAAAGGTTAAGGTTTGAACGAGTAAATGGTTATGATCGTTTTACGGAGACTCTAAGCTTCAAGGTTTTCAAGCTGTTCTGTGCTCATGGGGAGAGACCCCAATGGGTTGAGATTGAAAGTACTGGAAATGATGCTCTGTTTTTGGGTACCAATCAATCCATGTGTGTCTCTGCGCTGGACTTTCCAGGTTGTCAGCCAAATTCCGTATACTTCACTGATGATTGTGTGGATGTAGAATGCCATAAACCTAAAGGGCCTCATGATATGGGTACCTTCAACTTGGAAAACAGAAGCATGGGAACACATTACTGCTTGGATCGTTTGCAAAAGCACATGCCACCAGCAATTTGGATCTTGCCCTCTATGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

405

Amino Acids

46.13

Weight (kDa)

8.57

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12381
malus_domestica	MD05G1250900.v1.1 MD10G1231500.v1.1
prunus_persica	Prupe.6G183700_v2.0.a1 Prupe.6G184200_v2.0.a1 Prupe.6G184600_v2.0.a1 Prupe.8G064600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020191 RchiOBHm_Chr5g0020201
rosa_laevigata	RLG00000032508 RLG00000032510 RLG00000032511 RLG00000032585 RLG00000033606
rosa_multiflora	Rmu_sc0002087.1_g000011 Rmu_sc0002087.1_g000012 Rmu_ssc0000244.1_g000031
rosa_roxburghii	Rroxscaffold_1G00057970 Rroxscaffold_1G00058000 Rroxscaffold_1G00058010
rosa_rugosa	Rorug05G0057600 Rorug05G0057700 Rorug05G0057800
rosa_samantha	Rh5AG148000 Rh5AG148100 Rh5BG147600 Rh5BG147700 Rh5BG147800 Rh5CG159000 Rh5CG159100 Rh5CG274700 Rh5DG146800 Rh5DG146900 Rh5DG153600 Rh5DG252100
rosa_wichuraiana	Rw5G013090 Rw5G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
Acc65I	GGTACC	2 cut(s)	989, 1112
AccB1I	GGYRCC	2 cut(s)	989, 1112
AccI	GTMKAC	1 cut(s)	1050
AciI	CCGC	2 cut(s)	110, 805
AclWI	GGATC	6 cut(s)	73, 678, 707, 720, 1167, 1202
AcsI	RAATTY	2 cut(s)	831, 1042
AfaI	GTAC	4 cut(s)	376, 964, 991, 1114
AfiI	CCNNNNNNNGG	2 cut(s)	315, 368
AflIII	ACRYGT	1 cut(s)	276
AjnI	CCWGG	3 cut(s)	715, 753, 1027
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AluBI	AGCT	5 cut(s)	264, 425, 696, 900, 916
AluI	AGCT	5 cut(s)	264, 425, 696, 900, 916
Alw21I	GWGCWC	1 cut(s)	928
Alw26I	GTCTC	4 cut(s)	822, 884, 931, 1015
AlwI	GGATC	6 cut(s)	73, 678, 707, 720, 1167, 1202
AlwNI	CAGNNNCTG	1 cut(s)	722
AoxI	GGCC	3 cut(s)	321, 613, 1097
ApeKI	GCWGC	2 cut(s)	154, 216
ApoI	RAATTY	2 cut(s)	831, 1042
AseI	ATTAAT	1 cut(s)	447
Asp718I	GGTACC	2 cut(s)	989, 1112
AspLEI	GCGC	2 cut(s)	159, 1018
AspS9I	GGNCC	1 cut(s)	1097
BamHI	GGATCC	1 cut(s)	712
BanI	GGYRCC	2 cut(s)	989, 1112
Bbv12I	GWGCWC	1 cut(s)	928
BbvI	GCAGC	2 cut(s)	166, 228
BccI	CCATC	1 cut(s)	509
BciT130I	CCWGG	3 cut(s)	717, 755, 1029
BcoDI	GTCTC	4 cut(s)	822, 884, 931, 1015
BfaI	CTAG	2 cut(s)	567, 623
BfmI	CTRYAG	1 cut(s)	465
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	2 cut(s)	155, 217
BlsI	GCNGC	2 cut(s)	156, 218
BmcAI	AGTACT	1 cut(s)	964
Bme1390I	CCNGG	3 cut(s)	717, 755, 1029
BmgT120I	GGNCC	1 cut(s)	1097
BmiI	GGNNCC	3 cut(s)	714, 991, 1114
BmrFI	CCNGG	3 cut(s)	717, 755, 1029
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	4 cut(s)	57, 168, 547, 964
BmuI	ACTGGG	1 cut(s)	378
BsaBI	GATNNNNATC	2 cut(s)	83, 336
BsaI	GGTCTC	1 cut(s)	931
BsaJI	CCNNGG	3 cut(s)	310, 753, 754
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 368
Bse1I	ACTGG	4 cut(s)	373, 392, 616, 970
Bse8I	GATNNNNATC	2 cut(s)	83, 336
BseBI	CCWGG	3 cut(s)	717, 755, 1029
BseDI	CCNNGG	3 cut(s)	310, 753, 754
BseGI	GGATG	4 cut(s)	337, 559, 749, 1078
BseJI	GATNNNNATC	2 cut(s)	83, 336
BseLI	CCNNNNNNNGG	2 cut(s)	315, 368
BseNI	ACTGG	4 cut(s)	373, 392, 616, 970
BseXI	GCAGC	2 cut(s)	166, 228
BseYI	CCCAGC	1 cut(s)	30
BshFI	GGCC	3 cut(s)	323, 615, 1099
BshNI	GGYRCC	2 cut(s)	989, 1112
BsiHKAI	GWGCWC	1 cut(s)	928
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	315, 368
BsmAI	GTCTC	4 cut(s)	822, 884, 931, 1015
BsmFI	GGGAC	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	1085
BsnI	GGCC	3 cut(s)	323, 615, 1099
Bso31I	GGTCTC	1 cut(s)	931
Bsp1286I	GDGCHC	1 cut(s)	928
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	2 cut(s)	110, 805
BspANI	GGCC	3 cut(s)	323, 615, 1099
BspHI	TCATGA	1 cut(s)	1102
BspLI	GGNNCC	3 cut(s)	714, 991, 1114
BspMAI	CTGCAG	1 cut(s)	469
BspPI	GGATC	6 cut(s)	73, 678, 707, 720, 1167, 1202
BspT107I	GGYRCC	2 cut(s)	989, 1112
BspTNI	GGTCTC	1 cut(s)	931
BsrI	ACTGG	4 cut(s)	373, 392, 616, 970
BssECI	CCNNGG	3 cut(s)	310, 753, 754
BssNAI	GTATAC	1 cut(s)	1051
BssT1I	CCWWGG	1 cut(s)	310
Bst1107I	GTATAC	1 cut(s)	1051
Bst2UI	CCWGG	3 cut(s)	717, 755, 1029
Bst4CI	ACNGT	2 cut(s)	212, 287
BstC8I	GCNNGC	2 cut(s)	119, 325
BstDEI	CTNAG	2 cut(s)	19, 896
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	4 cut(s)	337, 559, 749, 1078
BstHHI	GCGC	2 cut(s)	159, 1018
BstMAI	GTCTC	4 cut(s)	822, 884, 931, 1015
BstNI	CCWGG	3 cut(s)	717, 755, 1029
BstNSI	RCATGY	1 cut(s)	1180
BstSCI	CCNGG	3 cut(s)	715, 753, 1027
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	2 cut(s)	166, 228
BstX2I	RGATCY	3 cut(s)	712, 760, 1194
BstXI	CCANNNNNNTGG	1 cut(s)	1191
BstYI	RGATCY	3 cut(s)	712, 760, 1194
BstZ17I	GTATAC	1 cut(s)	1051
BsuRI	GGCC	3 cut(s)	323, 615, 1099
BtgI	CCRYGG	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	128
BtsCI	GGATG	4 cut(s)	337, 559, 749, 1078
BtsIMutI	CAGTG	2 cut(s)	720, 1056
Cac8I	GCNNGC	2 cut(s)	119, 325
CaiI	CAGNNNCTG	1 cut(s)	722
CciI	TCATGA	1 cut(s)	1102
CfoI	GCGC	2 cut(s)	159, 1018
Cfr13I	GGNCC	1 cut(s)	1097
Csp6I	GTAC	4 cut(s)	375, 963, 990, 1113
CviAII	CATG	9 cut(s)	36, 168, 311, 689, 929, 1003, 1103, 1138, 1177
CviQI	GTAC	4 cut(s)	375, 963, 990, 1113
DdeI	CTNAG	2 cut(s)	19, 896
DraI	TTTAAA	1 cut(s)	544
Eco130I	CCWWGG	1 cut(s)	310
Eco31I	GGTCTC	1 cut(s)	931
EcoO109I	RGGNCCY	1 cut(s)	1097
EcoRII	CCWGG	3 cut(s)	715, 753, 1027
EcoT14I	CCWWGG	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	9 cut(s)	39, 171, 314, 692, 932, 1006, 1106, 1141, 1180
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	9 cut(s)	35, 167, 310, 688, 928, 1002, 1102, 1137, 1176
FblI	GTMKAC	1 cut(s)	1050
Fnu4HI	GCNGC	2 cut(s)	155, 217
FokI	GGATG	4 cut(s)	344, 566, 736, 1085
Fsp4HI	GCNGC	2 cut(s)	155, 217
FspBI	CTAG	2 cut(s)	567, 623
GlaI	GCGC	2 cut(s)	158, 1017
GluI	GCNGC	2 cut(s)	155, 217
GsaI	CCCAGC	1 cut(s)	34
HaeIII	GGCC	3 cut(s)	323, 615, 1099
HhaI	GCGC	2 cut(s)	159, 1018
Hin1II	CATG	9 cut(s)	39, 171, 314, 692, 932, 1006, 1106, 1141, 1180
Hin6I	GCGC	2 cut(s)	157, 1016
HinP1I	GCGC	2 cut(s)	157, 1016
HindIII	AAGCTT	2 cut(s)	694, 898
HinfI	GANTC	5 cut(s)	64, 181, 337, 588, 892
Hpy166II	GTNNAC	2 cut(s)	810, 1051
Hpy188I	TCNGA	3 cut(s)	91, 101, 587
Hpy188III	TCNNGA	3 cut(s)	56, 68, 1103
Hpy8I	GTNNAC	2 cut(s)	810, 1051
Hpy99I	CGWCG	1 cut(s)	421
HpyAV	CCTTC	3 cut(s)	395, 483, 1126
HpyCH4III	ACNGT	2 cut(s)	212, 287
HpyCH4IV	ACGT	2 cut(s)	276, 419
HpyCH4V	TGCA	4 cut(s)	117, 467, 745, 1168
HpyF3I	CTNAG	2 cut(s)	19, 896
HpySE526I	ACGT	2 cut(s)	276, 419
Hsp92II	CATG	9 cut(s)	39, 171, 314, 692, 932, 1006, 1106, 1141, 1180
HspAI	GCGC	2 cut(s)	157, 1016
KpnI	GGTACC	2 cut(s)	993, 1116
Lsp1109I	GCAGC	2 cut(s)	166, 228
LweI	GCATC	4 cut(s)	57, 168, 547, 964
MaeI	CTAG	2 cut(s)	567, 623
MaeII	ACGT	2 cut(s)	276, 419
MaeIII	GTNAC	3 cut(s)	170, 241, 346
MboII	GAAGA	3 cut(s)	17, 297, 473
MflI	RGATCY	3 cut(s)	712, 760, 1194
MhlI	GDGCHC	1 cut(s)	928
MluCI	AATT	6 cut(s)	195, 600, 793, 831, 1042, 1188
MlyI	GAGTC	1 cut(s)	886
MnlI	CCTC	4 cut(s)	285, 362, 1110, 1213
MseI	TTAA	5 cut(s)	356, 447, 543, 681, 851
MspR9I	CCNGG	3 cut(s)	717, 755, 1029
Mva1269I	GAATGC	1 cut(s)	1085
MvaI	CCWGG	3 cut(s)	717, 755, 1029
NcoI	CCATGG	1 cut(s)	310
NlaIII	CATG	9 cut(s)	39, 171, 314, 692, 932, 1006, 1106, 1141, 1180
NlaIV	GGNNCC	3 cut(s)	714, 991, 1114
NmuCI	GTSAC	2 cut(s)	170, 241
NspI	RCATGY	1 cut(s)	1180
PagI	TCATGA	1 cut(s)	1102
PasI	CCCWGGG	1 cut(s)	754
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	1085
PfeI	GAWTC	4 cut(s)	64, 181, 337, 588
PkrI	GCNGC	2 cut(s)	156, 218
PleI	GAGTC	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	886
PshBI	ATTAAT	1 cut(s)	447
PsiI	TTATAA	1 cut(s)	609
Psp6I	CCWGG	3 cut(s)	715, 753, 1027
PspFI	CCCAGC	1 cut(s)	30
PspGI	CCWGG	3 cut(s)	715, 753, 1027
PspN4I	GGNNCC	3 cut(s)	714, 991, 1114
PspPI	GGNCC	1 cut(s)	1097
PsrI	GAACNNNNNNTAC	2 cut(s)	266, 298
PstI	CTGCAG	1 cut(s)	469
PstNI	CAGNNNCTG	1 cut(s)	722
PsuI	RGATCY	3 cut(s)	712, 760, 1194
RsaI	GTAC	4 cut(s)	376, 964, 991, 1114
RsaNI	GTAC	4 cut(s)	375, 963, 990, 1113
SaqAI	TTAA	5 cut(s)	356, 447, 543, 681, 851
SatI	GCNGC	2 cut(s)	155, 217
Sau96I	GGNCC	1 cut(s)	1097
ScaI	AGTACT	1 cut(s)	964
SchI	GAGTC	1 cut(s)	886
ScrFI	CCNGG	3 cut(s)	717, 755, 1029
SduI	GDGCHC	1 cut(s)	928
SfaNI	GCATC	4 cut(s)	57, 168, 547, 964
SfcI	CTRYAG	1 cut(s)	465
Sse9I	AATT	6 cut(s)	195, 600, 793, 831, 1042, 1188
SsiI	CCGC	2 cut(s)	110, 805
SspMI	CTAG	2 cut(s)	567, 623
StyD4I	CCNGG	3 cut(s)	715, 753, 1027
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	2 cut(s)	212, 287
TaiI	ACGT	2 cut(s)	279, 422
TaqI	TCGA	4 cut(s)	69, 416, 591, 653
TasI	AATT	6 cut(s)	195, 600, 793, 831, 1042, 1188
TatI	WGTACW	1 cut(s)	962
TfiI	GAWTC	4 cut(s)	64, 181, 337, 588
Tru1I	TTAA	5 cut(s)	356, 447, 543, 681, 851
Tru9I	TTAA	5 cut(s)	356, 447, 543, 681, 851
TscAI	CASTG	2 cut(s)	727, 1063
TseFI	GTSAC	2 cut(s)	170, 241
TseI	GCWGC	2 cut(s)	154, 216
Tsp45I	GTSAC	2 cut(s)	170, 241
TspDTI	ATGAA	2 cut(s)	510, 671
TspGWI	ACGGA	2 cut(s)	902, 1036
TspRI	CASTG	2 cut(s)	727, 1063
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	2 cut(s)	831, 1042
XceI	RCATGY	1 cut(s)	1180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1188
XmiI	GTMKAC	1 cut(s)	1050
XspI	CTAG	2 cut(s)	567, 623
ZrmI	AGTACT	1 cut(s)	964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.