Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003266

Physical Location & Seq

Genomic Coordinates Forward (+)

79922352 .. 79930021

Gene Structure 7670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00057970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTCGAGCGAGGCAATCATATCAACCATGGTTTCATCTCCGGCGGGCTTCGCTCCCAAGCAACCTTCGGATTCGATACTAGAAAAATTGATACCAATCACCGACTACATCCGGTTCGGTGCGGTTTGCAAGCATTGGCAATCCGCGGCGTCGCATCAAAAAGAGCATCGCATGAAATCATATGGAAAGTTCATATTTACATCTGTCAAGATGAGTGTGATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

75

Amino Acids

8.36

Weight (kDa)

9.52

Isoelectric Point (pI)

57.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12381
malus_domestica	MD05G1250900.v1.1 MD10G1231500.v1.1
prunus_persica	Prupe.6G183700_v2.0.a1 Prupe.6G184200_v2.0.a1 Prupe.6G184600_v2.0.a1 Prupe.8G064600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020191 RchiOBHm_Chr5g0020201
rosa_laevigata	RLG00000032508 RLG00000032510 RLG00000032511 RLG00000032585 RLG00000033606
rosa_multiflora	Rmu_sc0002087.1_g000011 Rmu_sc0002087.1_g000012 Rmu_ssc0000244.1_g000031
rosa_roxburghii	Rroxscaffold_1G00057970 Rroxscaffold_1G00058000 Rroxscaffold_1G00058010
rosa_rugosa	Rorug05G0057600 Rorug05G0057700 Rorug05G0057800
rosa_samantha	Rh5AG148000 Rh5AG148100 Rh5BG147600 Rh5BG147700 Rh5BG147800 Rh5CG159000 Rh5CG159100 Rh5CG274700 Rh5DG146800 Rh5DG146900 Rh5DG153600 Rh5DG252100
rosa_wichuraiana	Rw5G013090 Rw5G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	146
AciI	CCGC	4 cut(s)	44, 122, 144, 146
AclWI	GGATC	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	91
BfaI	CTAG	1 cut(s)	80
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmsI	GCATC	2 cut(s)	163, 175
BsaBI	GATNNNNATC	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	27, 144
BsaWI	WCCGGW	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	223
Bse8I	GATNNNNATC	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	27, 144
BseGI	GGATG	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	41, 112
Bsp143I	GATC	1 cut(s)	219
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	4 cut(s)	44, 122, 144, 146
BspFNI	CGCG	1 cut(s)	146
BspPI	GGATC	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	2 cut(s)	27, 144
BssMI	GATC	1 cut(s)	219
BssNI	GRCGYC	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	27
BstACI	GRCGYC	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	46, 131
BstDSI	CCRYGG	2 cut(s)	27, 144
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	146
BstKTI	GATC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstUI	CGCG	1 cut(s)	146
BtgI	CCRYGG	2 cut(s)	27, 144
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	46, 131
Cfr42I	CCGCGG	1 cut(s)	147
CseI	GACGC	1 cut(s)	138
CviAII	CATG	2 cut(s)	28, 172
CviJI	RGCY	1 cut(s)	48
CviKI_1	RGCY	1 cut(s)	48
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	31, 175
FaiI	YATR	6 cut(s)	20, 29, 173, 181, 183, 194
FatI	CATG	2 cut(s)	27, 171
FauI	CCCGC	1 cut(s)	37
FauNDI	CATATG	1 cut(s)	181
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	1 cut(s)	147
HapII	CCGG	2 cut(s)	41, 112
HgaI	GACGC	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	31, 175
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	2 cut(s)	41, 112
HphI	GGTGA	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	208
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	31, 175
KspI	CCGCGG	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	2 cut(s)	54, 125
LweI	GCATC	2 cut(s)	163, 175
MaeI	CTAG	1 cut(s)	80
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MluCI	AATT	1 cut(s)	86
MnlI	CCTC	1 cut(s)	4
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	2 cut(s)	41, 112
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	50
NcoI	CCATGG	1 cut(s)	27
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	1 cut(s)	219
NlaIII	CATG	2 cut(s)	31, 175
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	148
SacII	CCGCGG	1 cut(s)	147
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	219
SetI	ASST	1 cut(s)	67
SfaNI	GCATC	2 cut(s)	163, 175
Sfr303I	CCGCGG	1 cut(s)	147
SgrBI	CCGCGG	1 cut(s)	147
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	4 cut(s)	44, 122, 144, 146
SspMI	CTAG	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	27
TaqI	TCGA	2 cut(s)	5, 74
TasI	AATT	1 cut(s)	86
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	71
TspDTI	ATGAA	3 cut(s)	24, 181, 188
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.