Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003266

Physical Location & Seq

Genomic Coordinates Forward (+)

15624246 .. 15625930

Gene Structure 1685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG153600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGTACAGGCAGTCGTATTTGAATCACACCAAAGAAAAAGGAAAGAAGCCTCAGTTTCTGCAGGTTGGGCATGGCTTCCAAGTGAGCTTTTGGAATTGATACTAGACAAATTGGTACTTATCTCTGACTACATCCAGTTCGGTGCAGTTTGCAAGCATTGGCAATCCGCCGCTAAACAACATAAACAGCAATGGATGAAATTTTGTCACAAACAGCTTCCTATGCTGATGCAGATTACTAGAAACCGCAACAAAAGCAATGCTGCCTTGTTTAGTATATCGCAGGGAGGTATGCTGAGGCAGTTGAGCTATGTGCCTTATTACAACAAAAAGGGAGTTGAATTATATTCCACCCATGGTTGGTTAGCTTATAATGACAAGTTGGTTCTGACCTTCTTGAACCCTTTTACCGGAGATACTATTAGCCCTCCACCAATCATAGAACCTACAGATGCAGTGCAAGACAGACTGGATTCTCCCTCTACGCGCATTTATCAGGTTGCATTATCAGCTGACCCTTGTTTGAATCCCAATGTTTATGAGGTTCTAGTACAGTATAGGCTTTATCCTCAAACCTATCTAGCTCATTTTAATTCAGCAGATGCTACTTGGACTCAAATAGGGAGGAATAATACAAAGACACATGCAAATCTACGGAGAAGCAAAAGTGGAGACGTCCATCCTCAGGCATCGATGTCGGTGCTGCTCTTGCCTGTGCCGAATCAGGTCTCGATCCTAAGCTTCTTCTTACAGGTGGAATGGTCGATGAAGAGTTTGAAGTCGCCCTTGATGGCGCTTGAAGTTTTAATTGAGCTCCCCGCGCATACGAAGGACCTTAAACACCTTGATGGTGACGCCGTCCTGGATGTCAAGAGTCTTCGTCCGGCAACAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

298

Amino Acids

33.81

Weight (kDa)

9.21

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	24 - 61	8.2e-06	F-box domain
F-box-like	PF12937	26 - 70	3.1e-06	F-box-like
Beta-prop_KIB1-4	PF03478	115 - 211	3.1e-09	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12381
malus_domestica	MD05G1250900.v1.1 MD10G1231500.v1.1
prunus_persica	Prupe.6G183700_v2.0.a1 Prupe.6G184200_v2.0.a1 Prupe.6G184600_v2.0.a1 Prupe.8G064600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020191 RchiOBHm_Chr5g0020201
rosa_laevigata	RLG00000032508 RLG00000032510 RLG00000032511 RLG00000032585 RLG00000033606
rosa_multiflora	Rmu_sc0002087.1_g000011 Rmu_sc0002087.1_g000012 Rmu_ssc0000244.1_g000031
rosa_roxburghii	Rroxscaffold_1G00057970 Rroxscaffold_1G00058000 Rroxscaffold_1G00058010
rosa_rugosa	Rorug05G0057600 Rorug05G0057700 Rorug05G0057800
rosa_samantha	Rh5AG148000 Rh5AG148100 Rh5BG147600 Rh5BG147700 Rh5BG147800 Rh5CG159000 Rh5CG159100 Rh5CG274700 Rh5DG146800 Rh5DG146900 Rh5DG153600 Rh5DG252100
rosa_wichuraiana	Rw5G013090 Rw5G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AatII	GACGTC	1 cut(s)	678
Acc36I	ACCTGC	1 cut(s)	53
AccII	CGCG	2 cut(s)	487, 821
AciI	CCGC	4 cut(s)	168, 171, 247, 819
AclWI	GGATC	1 cut(s)	727
AcsI	RAATTY	1 cut(s)	200
AcyI	GRCGYC	2 cut(s)	675, 855
AfaI	GTAC	3 cut(s)	6, 117, 552
AfiI	CCNNNNNNNGG	3 cut(s)	360, 410, 685
AgsI	TTSAA	6 cut(s)	23, 341, 400, 526, 778, 800
AjnI	CCWGG	1 cut(s)	861
AluBI	AGCT	8 cut(s)	88, 217, 309, 368, 512, 584, 741, 814
AluI	AGCT	8 cut(s)	88, 217, 309, 368, 512, 584, 741, 814
Alw21I	GWGCWC	1 cut(s)	816
Alw26I	GTCTC	2 cut(s)	666, 733
AlwI	GGATC	1 cut(s)	727
AlwNI	CAGNNNCTG	1 cut(s)	59
ApeKI	GCWGC	2 cut(s)	263, 703
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	3 cut(s)	489, 796, 823
AspS9I	GGNCC	1 cut(s)	832
AsuHPI	GGTGA	1 cut(s)	863
AvaII	GGWCC	1 cut(s)	832
AxyI	CCTNAGG	1 cut(s)	684
BanII	GRGCYC	1 cut(s)	816
BbsI	GAAGAC	1 cut(s)	869
Bbv12I	GWGCWC	1 cut(s)	816
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	250, 690
BccI	CCATC	3 cut(s)	687, 784, 842
BceAI	ACGGC	1 cut(s)	842
BcgI	CGANNNNNNTGC	4 cut(s)	678, 682, 712, 716
BciT130I	CCWGG	1 cut(s)	863
BcoDI	GTCTC	2 cut(s)	666, 733
BfaI	CTAG	4 cut(s)	104, 240, 548, 581
BfmI	CTRYAG	2 cut(s)	60, 447
BfoI	RGCGCY	1 cut(s)	797
BfuAI	ACCTGC	1 cut(s)	53
BisI	GCNGC	3 cut(s)	171, 264, 704
BlsI	GCNGC	3 cut(s)	172, 265, 705
Bme1390I	CCNGG	1 cut(s)	863
Bme18I	GGWCC	1 cut(s)	832
BmgT120I	GGNCC	1 cut(s)	832
BmrFI	CCNGG	1 cut(s)	863
BmsI	GCATC	4 cut(s)	219, 442, 592, 698
BpiI	GAAGAC	1 cut(s)	869
Bpu10I	CCTNAGC	2 cut(s)	296, 737
Bsa29I	ATCGAT	1 cut(s)	692
BsaHI	GRCGYC	2 cut(s)	675, 855
BsaI	GGTCTC	1 cut(s)	733
BsaJI	CCNNGG	1 cut(s)	355
BsaWI	WCCGGW	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	3 cut(s)	360, 410, 685
Bse1I	ACTGG	2 cut(s)	136, 474
Bse21I	CCTNAGG	1 cut(s)	684
Bse3DI	GCAATG	2 cut(s)	197, 265
BseBI	CCWGG	1 cut(s)	863
BseCI	ATCGAT	1 cut(s)	692
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	4 cut(s)	132, 201, 679, 871
BseLI	CCNNNNNNNGG	3 cut(s)	360, 410, 685
BseMI	GCAATG	2 cut(s)	197, 265
BseMII	CTCAG	3 cut(s)	66, 287, 698
BseNI	ACTGG	2 cut(s)	136, 474
BseXI	GCAGC	2 cut(s)	250, 690
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	2 cut(s)	487, 821
BshVI	ATCGAT	1 cut(s)	692
BsiHKAI	GWGCWC	1 cut(s)	816
BsiSI	CCGG	2 cut(s)	411, 884
BslI	CCNNNNNNNGG	3 cut(s)	360, 410, 685
BsmAI	GTCTC	2 cut(s)	666, 733
BsmBI	CGTCTC	1 cut(s)	666
Bso31I	GGTCTC	1 cut(s)	733
Bsp1286I	GDGCHC	1 cut(s)	816
Bsp143I	GATC	1 cut(s)	732
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	4 cut(s)	168, 171, 247, 819
BspCNI	CTCAG	3 cut(s)	65, 288, 697
BspDI	ATCGAT	1 cut(s)	692
BspFNI	CGCG	2 cut(s)	487, 821
BspMAI	CTGCAG	1 cut(s)	64
BspMI	ACCTGC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	727
BspTNI	GGTCTC	1 cut(s)	733
BsrDI	GCAATG	2 cut(s)	197, 265
BsrI	ACTGG	2 cut(s)	136, 474
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	1 cut(s)	732
BssNI	GRCGYC	2 cut(s)	675, 855
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	1 cut(s)	555
Bst6I	CTCTTC	1 cut(s)	764
BstACI	GRCGYC	2 cut(s)	675, 855
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	4 cut(s)	52, 296, 684, 737
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	4 cut(s)	132, 201, 679, 871
BstFNI	CGCG	2 cut(s)	487, 821
BstH2I	RGCGCY	1 cut(s)	797
BstHHI	GCGC	3 cut(s)	489, 796, 823
BstKTI	GATC	1 cut(s)	735
BstMAI	GTCTC	2 cut(s)	666, 733
BstMBI	GATC	1 cut(s)	732
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 223, 255, 509, 709, 820
BstNI	CCWGG	1 cut(s)	863
BstNSI	RCATGY	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	861
BstSFI	CTRYAG	2 cut(s)	60, 447
BstUI	CGCG	2 cut(s)	487, 821
BstV1I	GCAGC	2 cut(s)	250, 690
BstV2I	GAAGAC	1 cut(s)	869
Bsu15I	ATCGAT	1 cut(s)	692
Bsu36I	CCTNAGG	1 cut(s)	684
BsuTUI	ATCGAT	1 cut(s)	692
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	4 cut(s)	132, 201, 679, 871
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	1 cut(s)	462
BveI	ACCTGC	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	155
CaiI	CAGNNNCTG	1 cut(s)	59
CfoI	GCGC	3 cut(s)	489, 796, 823
Cfr13I	GGNCC	1 cut(s)	832
ClaI	ATCGAT	1 cut(s)	692
CseI	GACGC	1 cut(s)	863
Csp6I	GTAC	3 cut(s)	5, 116, 551
CviAII	CATG	3 cut(s)	72, 356, 644
CviQI	GTAC	3 cut(s)	5, 116, 551
DdeI	CTNAG	4 cut(s)	52, 296, 684, 737
DpnI	GATC	1 cut(s)	734
DpnII	GATC	1 cut(s)	732
Eam1104I	CTCTTC	1 cut(s)	764
EarI	CTCTTC	1 cut(s)	764
EciI	GGCGGA	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	814
Eco130I	CCWWGG	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	816
Eco31I	GGTCTC	1 cut(s)	733
Eco47I	GGWCC	1 cut(s)	832
Eco53kI	GAGCTC	1 cut(s)	814
Eco81I	CCTNAGG	1 cut(s)	684
EcoICRI	GAGCTC	1 cut(s)	814
EcoO109I	RGGNCCY	1 cut(s)	832
EcoRII	CCWGG	1 cut(s)	861
EcoT14I	CCWWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	816
ErhI	CCWWGG	1 cut(s)	355
Esp3I	CGTCTC	1 cut(s)	666
FaeI	CATG	3 cut(s)	75, 359, 647
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FatI	CATG	3 cut(s)	71, 355, 643
FauI	CCCGC	1 cut(s)	826
Fnu4HI	GCNGC	3 cut(s)	171, 264, 704
FokI	GGATG	4 cut(s)	119, 208, 666, 878
FriOI	GRGCYC	1 cut(s)	816
Fsp4HI	GCNGC	3 cut(s)	171, 264, 704
FspBI	CTAG	4 cut(s)	104, 240, 548, 581
GlaI	GCGC	3 cut(s)	488, 795, 822
GluI	GCNGC	3 cut(s)	171, 264, 704
HaeII	RGCGCY	1 cut(s)	797
HapII	CCGG	2 cut(s)	411, 884
HgaI	GACGC	1 cut(s)	863
HhaI	GCGC	3 cut(s)	489, 796, 823
Hin1I	GRCGYC	2 cut(s)	675, 855
Hin1II	CATG	3 cut(s)	75, 359, 647
Hin6I	GCGC	3 cut(s)	487, 794, 821
HinP1I	GCGC	3 cut(s)	487, 794, 821
HindIII	AAGCTT	1 cut(s)	739
HinfI	GANTC	6 cut(s)	23, 473, 526, 613, 721, 874
HpaII	CCGG	2 cut(s)	411, 884
HphI	GGTGA	1 cut(s)	863
Hpy188I	TCNGA	2 cut(s)	127, 390
Hpy188III	TCNNGA	3 cut(s)	397, 730, 871
HpyAV	CCTTC	2 cut(s)	403, 823
HpyCH4III	ACNGT	1 cut(s)	555
HpyCH4IV	ACGT	1 cut(s)	675
HpyCH4V	TGCA	8 cut(s)	62, 146, 153, 232, 455, 460, 503, 647
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 223, 255, 509, 709, 820
HpyF3I	CTNAG	4 cut(s)	52, 296, 684, 737
HpySE526I	ACGT	1 cut(s)	675
Hsp92I	GRCGYC	2 cut(s)	675, 855
Hsp92II	CATG	3 cut(s)	75, 359, 647
HspAI	GCGC	3 cut(s)	487, 794, 821
Kzo9I	GATC	1 cut(s)	732
LmnI	GCTCC	1 cut(s)	819
Lsp1109I	GCAGC	2 cut(s)	250, 690
LweI	GCATC	4 cut(s)	219, 442, 592, 698
MaeI	CTAG	4 cut(s)	104, 240, 548, 581
MaeII	ACGT	1 cut(s)	675
MaeIII	GTNAC	2 cut(s)	206, 851
MalI	GATC	1 cut(s)	734
MboI	GATC	1 cut(s)	732
MboII	GAAGA	3 cut(s)	736, 781, 869
MhlI	GDGCHC	1 cut(s)	816
MluCI	AATT	6 cut(s)	95, 110, 200, 341, 592, 807
MlyI	GAGTC	2 cut(s)	607, 883
MnlI	CCTC	9 cut(s)	61, 281, 291, 438, 490, 535, 579, 618, 693
MseI	TTAA	3 cut(s)	591, 806, 837
MslI	CAYNNNNRTG	1 cut(s)	846
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	2 cut(s)	411, 884
MspR9I	CCNGG	1 cut(s)	863
MvaI	CCWGG	1 cut(s)	863
MvnI	CGCG	2 cut(s)	487, 821
MwoI	GCNNNNNNNGC	6 cut(s)	68, 223, 255, 509, 709, 820
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	1 cut(s)	732
NlaIII	CATG	3 cut(s)	75, 359, 647
NmuCI	GTSAC	2 cut(s)	206, 851
NspI	RCATGY	1 cut(s)	647
PfeI	GAWTC	4 cut(s)	23, 473, 526, 721
PflFI	GACNNNGTC	1 cut(s)	857
PfoI	TCCNGGA	1 cut(s)	861
PkrI	GCNGC	3 cut(s)	172, 265, 705
PleI	GAGTC	2 cut(s)	607, 882
PpsI	GAGTC	2 cut(s)	607, 882
PpuMI	RGGWCCY	1 cut(s)	832
PsiI	TTATAA	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	816
Psp5II	RGGWCCY	1 cut(s)	832
Psp6I	CCWGG	1 cut(s)	861
PspGI	CCWGG	1 cut(s)	861
PspPI	GGNCC	1 cut(s)	832
PspPPI	RGGWCCY	1 cut(s)	832
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	59
PsyI	GACNNNGTC	1 cut(s)	857
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	3 cut(s)	6, 117, 552
RsaNI	GTAC	3 cut(s)	5, 116, 551
RseI	CAYNNNNRTG	1 cut(s)	846
SacI	GAGCTC	1 cut(s)	816
SaqAI	TTAA	3 cut(s)	591, 806, 837
SatI	GCNGC	3 cut(s)	171, 264, 704
Sau3AI	GATC	1 cut(s)	732
Sau96I	GGNCC	1 cut(s)	832
SchI	GAGTC	2 cut(s)	607, 883
ScrFI	CCNGG	1 cut(s)	863
SduI	GDGCHC	1 cut(s)	816
SfaNI	GCATC	4 cut(s)	219, 442, 592, 698
SfcI	CTRYAG	2 cut(s)	60, 447
SinI	GGWCC	1 cut(s)	832
SmiMI	CAYNNNNRTG	1 cut(s)	846
Sse9I	AATT	6 cut(s)	95, 110, 200, 341, 592, 807
SsiI	CCGC	4 cut(s)	168, 171, 247, 819
SspMI	CTAG	4 cut(s)	104, 240, 548, 581
SstI	GAGCTC	1 cut(s)	816
StyD4I	CCNGG	1 cut(s)	861
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	555
TaiI	ACGT	1 cut(s)	678
TaqI	TCGA	3 cut(s)	692, 731, 764
TasI	AATT	6 cut(s)	95, 110, 200, 341, 592, 807
TatI	WGTACW	1 cut(s)	550
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	4 cut(s)	23, 473, 526, 721
Tru1I	TTAA	3 cut(s)	591, 806, 837
Tru9I	TTAA	3 cut(s)	591, 806, 837
TscAI	CASTG	1 cut(s)	462
TseFI	GTSAC	2 cut(s)	206, 851
TseI	GCWGC	2 cut(s)	263, 703
Tsp45I	GTSAC	2 cut(s)	206, 851
TspDTI	ATGAA	2 cut(s)	212, 782
TspGWI	ACGGA	1 cut(s)	670
TspRI	CASTG	1 cut(s)	462
Tth111I	GACNNNGTC	1 cut(s)	857
VpaK11BI	GGWCC	1 cut(s)	832
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	647
XspI	CTAG	4 cut(s)	104, 240, 548, 581
ZraI	GACGTC	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.