Rh5AG148000

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003266
Physical Location & Seq
Reverse (-)
15520508 .. 15521276
769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG148000.1

Sequence Viewer

Length: 528 bp
ATGGAACTTTCTTATGCAATGTATTACAGAGGCAAGTTTCTAATTTGGAATGACCATTGTGAAATTTTTTCAGTTTATGATAGTAGCAAAGGAACGAAGGTACTCCTTGATTATAGATGGGTACTCCTTGCTTATAGATCTTTATATGTTCAGGATAGTAGAATATACCTTGTGGAATCGTCCAAGGGAGATCTATTGCTGATTATGAAGGGACCATCGTCTGAAGATCTGCACATCAACGTTTTCAAGTTGTTGAGTGATTTAAATAATGAATTCAAATGCTTAAAGATTGAGAGTATCGGATATGATGCTTTGTTTTTGGATCGTAACCAGTCTATCTGTGTCTCTGCTTTAGAATTTCCAGAGTGTCATCCAAATTCAATATACTTCGTCAACGGTACATTCAACTTGGAAAACCAAAAAATGCATTGGCGTTACCTCTCAATACCAACATTATCAGCAATATGGAGTTCACCAACTATATGCTTTGAAAATCGCCTTTACCAACAACAAATGAAGGTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

175

Amino Acids

20.59

Weight (kDa)

6.07

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 5 - 136 6.9e-18 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 240
AclWI GGATC 1 cut(s) 330
AcsI RAATTY 4 cut(s) 63, 272, 356, 376
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 3 cut(s) 102, 123, 400
AgsI TTSAA 5 cut(s) 247, 277, 381, 406, 491
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 1 cut(s) 330
ApoI RAATTY 4 cut(s) 63, 272, 356, 376
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 465
AvaII GGWCC 1 cut(s) 212
BccI CCATC 2 cut(s) 111, 223
BcoDI GTCTC 1 cut(s) 349
BglII AGATCT 3 cut(s) 137, 190, 226
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 213
BmsI GCATC 1 cut(s) 298
BoxI GACNNNNGTC 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 331
Bse3DI GCAATG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 370
BseMI GCAATG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 331
BsgI GTGCAG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 349
BsmFI GGGAC 1 cut(s) 225
Bsp143I GATC 4 cut(s) 137, 190, 226, 322
BspLI GGNNCC 1 cut(s) 213
BspPI GGATC 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 4 cut(s) 137, 190, 226, 322
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 398
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 4 cut(s) 140, 193, 229, 325
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 4 cut(s) 137, 190, 226, 322
BstPAI GACNNNNGTC 1 cut(s) 217
BstX2I RGATCY 3 cut(s) 137, 190, 226
BstYI RGATCY 3 cut(s) 137, 190, 226
BtsCI GGATG 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 3 cut(s) 101, 122, 399
CviQI GTAC 3 cut(s) 101, 122, 399
DpnI GATC 4 cut(s) 139, 192, 228, 324
DpnII GATC 4 cut(s) 137, 190, 226, 322
DraI TTTAAA 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 183
FaqI GGGAC 1 cut(s) 225
FokI GGATG 1 cut(s) 357
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 1 cut(s) 176
HphI GGTGA 1 cut(s) 465
Hpy166II GTNNAC 2 cut(s) 394, 473
Hpy188I TCNGA 2 cut(s) 223, 302
Hpy188III TCNNGA 2 cut(s) 152, 362
Hpy8I GTNNAC 2 cut(s) 394, 473
HpyAV CCTTC 3 cut(s) 91, 202, 511
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 3 cut(s) 17, 232, 427
HpySE526I ACGT 1 cut(s) 240
Kzo9I GATC 4 cut(s) 137, 190, 226, 322
LpnPI CCDG 3 cut(s) 137, 344, 375
LweI GCATC 1 cut(s) 298
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 2 cut(s) 326, 434
MalI GATC 4 cut(s) 139, 192, 228, 324
MboI GATC 4 cut(s) 137, 190, 226, 322
MboII GAAGA 1 cut(s) 236
MflI RGATCY 3 cut(s) 137, 190, 226
MluCI AATT 5 cut(s) 42, 63, 272, 356, 376
MnlI CCTC 2 cut(s) 23, 449
Mph1103I ATGCAT 1 cut(s) 429
MseI TTAA 2 cut(s) 263, 284
NdeII GATC 4 cut(s) 137, 190, 226, 322
NlaIV GGNNCC 1 cut(s) 213
NsiI ATGCAT 1 cut(s) 429
PfeI GAWTC 1 cut(s) 176
PshAI GACNNNNGTC 1 cut(s) 217
Psp1406I AACGTT 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 212
PsuI RGATCY 3 cut(s) 137, 190, 226
RsaI GTAC 3 cut(s) 102, 123, 400
RsaNI GTAC 3 cut(s) 101, 122, 399
SaqAI TTAA 2 cut(s) 263, 284
Sau3AI GATC 4 cut(s) 137, 190, 226, 322
Sau96I GGNCC 1 cut(s) 212
SetI ASST 5 cut(s) 102, 171, 243, 441, 522
SfaNI GCATC 1 cut(s) 298
SinI GGWCC 1 cut(s) 212
SmiI ATTTAAAT 1 cut(s) 264
Sse9I AATT 5 cut(s) 42, 63, 272, 356, 376
StyI CCWWGG 1 cut(s) 183
SwaI ATTTAAAT 1 cut(s) 264
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 1 cut(s) 243
TasI AATT 5 cut(s) 42, 63, 272, 356, 376
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 2 cut(s) 263, 284
Tru9I TTAA 2 cut(s) 263, 284
TspDTI ATGAA 2 cut(s) 221, 285
VpaK11BI GGWCC 1 cut(s) 212
XapI RAATTY 4 cut(s) 63, 272, 356, 376
Zsp2I ATGCAT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.