Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003266

Physical Location & Seq

Genomic Coordinates Forward (+)

15165706 .. 15166922

Gene Structure 1217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG147700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGGAAGAATGGAACTAAAAGACCAAAAAAATTTCTTCACGGTTGGGGTTCGTTTCCAAGTGAGCTTCTTGATTCGATACTTGAAAGATTGACATCCATCTTCGACTACATCCAGTTCAGTTTCGTTTGCAAGCATTGGCGAAGGGTTGCCTTAAATCAGAAGGAGCAGCGCCTCAAATCTTGTCACAAACAGCTAATTCCTTTGTTGCTGTTGATTCCAACCAAGAACAGCAACCAAAGACGTGTCTTGTACAGTGTCACACAAGGTAAGGTTGTTCGTAGCTTTAATGTCCCTAATCATCATGACGACGATAAGTGGTTGTGTGGTTCTTCCCATGGTTGGTTGGCTTATGCCGACGGCAATTTCCTAGTAACCCTAGTAAACCCTTTCACCAGAGGCACCATTAGGCTTCCACAAGTCATGGAAGTTGGGAAGTACAGACCTAAATGCTACTCGTTTGAGATTAGTAAAGTTGTATTGTCTGCCAACCCTTGTTTGTTTCCTAAAGATTATGAAGTTCTTGTTATCTTTGAGGATGATGATGGGGTGATCAAGGAACTAGCCCATTTTAAGTCCGGGGACAATGCCTGGACTCGCTCCGATAATCAAATGATCGATGGACTTGATATCCTTGATGTAATTTATTACAAAGGCCGGTTTGTAGCTCTAACTAGTTTGGATACCGATTCTGATCCCGGCCATGACGTTAACAAGTTTCATCCAAGCATAGAGTTCCTATCACACCCAGAAGAAGCTTGTAATAAGTCAACATATCTTGTGAAATCGACCTGGGAGGATCTATTGCTCGTAAATATAAATAATTCTTCCAGCATCAAGATTTTCAAGCAGGGTAGTTCGTATGGCGAATGGGTAGAGATAGAGAGTATTGGAACTGATACTTTGTTTCTGGATAACATGCAATCCATGTGTGTTTCCGCTTCATACTCGGGGTGTCATCCAAATTCGATATACTTCATGGAATGCGTTGTCAACTTAAATACAAGAAAAGAGACCAGGCATGACGAGTTACCAGAGCGGACACGACCAATAACATGGATTGCACCCACTGCGGCATTTTCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box F-box-like

Protein Analysis

362

Amino Acids

41.42

Weight (kDa)

6.86

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	18 - 54	8.6e-06	F-box domain
Beta-prop_KIB1-4	PF03478	84 - 334	1.4e-40	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12381
malus_domestica	MD05G1250900.v1.1 MD10G1231500.v1.1
prunus_persica	Prupe.6G183700_v2.0.a1 Prupe.6G184200_v2.0.a1 Prupe.6G184600_v2.0.a1 Prupe.8G064600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020191 RchiOBHm_Chr5g0020201
rosa_laevigata	RLG00000032508 RLG00000032510 RLG00000032511 RLG00000032585 RLG00000033606
rosa_multiflora	Rmu_sc0002087.1_g000011 Rmu_sc0002087.1_g000012 Rmu_ssc0000244.1_g000031
rosa_roxburghii	Rroxscaffold_1G00057970 Rroxscaffold_1G00058000 Rroxscaffold_1G00058010
rosa_rugosa	Rorug05G0057600 Rorug05G0057700 Rorug05G0057800
rosa_samantha	Rh5AG148000 Rh5AG148100 Rh5BG147600 Rh5BG147700 Rh5BG147800 Rh5CG159000 Rh5CG159100 Rh5CG274700 Rh5DG146800 Rh5DG146900 Rh5DG153600 Rh5DG252100
rosa_wichuraiana	Rw5G013090 Rw5G013100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	401
AccBSI	CCGCTC	1 cut(s)	1039
AciI	CCGC	3 cut(s)	939, 1039, 1073
AclWI	GGATC	2 cut(s)	689, 807
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	2 cut(s)	32, 964
AfaI	GTAC	2 cut(s)	254, 440
AfiI	CCNNNNNNNGG	1 cut(s)	342
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	86, 847
AhlI	ACTAGT	1 cut(s)	674
AjiI	CACGTC	1 cut(s)	245
AjnI	CCWGG	3 cut(s)	590, 791, 1016
AluBI	AGCT	5 cut(s)	67, 196, 285, 668, 758
AluI	AGCT	5 cut(s)	67, 196, 285, 668, 758
Alw26I	GTCTC	1 cut(s)	1007
AlwI	GGATC	2 cut(s)	689, 807
Ama87I	CYCGRG	1 cut(s)	949
AoxI	GGCC	2 cut(s)	655, 700
ApeKI	GCWGC	1 cut(s)	169
ApoI	RAATTY	2 cut(s)	32, 964
AspLEI	GCGC	1 cut(s)	174
AsuC2I	CCSGG	2 cut(s)	580, 699
AsuHPI	GGTGA	2 cut(s)	385, 562
AvaI	CYCGRG	1 cut(s)	949
BanI	GGYRCC	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	3 cut(s)	107, 539, 614
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	3 cut(s)	592, 793, 1018
BciVI	GTATCC	1 cut(s)	676
BclI	TGATCA	1 cut(s)	552
BcnI	CCSGG	2 cut(s)	580, 699
BcoDI	GTCTC	1 cut(s)	1007
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	4 cut(s)	371, 380, 563, 675
BfoI	RGCGCY	1 cut(s)	175
BfuI	GTATCC	1 cut(s)	676
BisI	GCNGC	2 cut(s)	170, 1074
BlsI	GCNGC	2 cut(s)	171, 1075
Bme1390I	CCNGG	5 cut(s)	580, 592, 699, 793, 1018
BmeT110I	CYCGRG	1 cut(s)	949
BmgBI	CACGTC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	5 cut(s)	580, 592, 699, 793, 1018
BmsI	GCATC	1 cut(s)	843
BpuMI	CCSGG	2 cut(s)	580, 699
Bsa29I	ATCGAT	1 cut(s)	618
BsaBI	GATNNNNATC	2 cut(s)	94, 693
BsaI	GGTCTC	1 cut(s)	1007
BsaJI	CCNNGG	3 cut(s)	337, 579, 792
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse118I	RCCGGY	1 cut(s)	657
Bse1I	ACTGG	1 cut(s)	115
Bse8I	GATNNNNATC	2 cut(s)	94, 693
BseBI	CCWGG	3 cut(s)	592, 793, 1018
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	3 cut(s)	337, 579, 792
BseGI	GGATG	5 cut(s)	95, 111, 544, 721, 958
BseJI	GATNNNNATC	2 cut(s)	94, 693
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	181
BshFI	GGCC	2 cut(s)	657, 702
BshNI	GGYRCC	1 cut(s)	401
BshVI	ATCGAT	1 cut(s)	618
BsiHKCI	CYCGRG	1 cut(s)	949
BsiSI	CCGG	3 cut(s)	579, 658, 699
BslFI	GGGAC	2 cut(s)	278, 596
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	1007
BsmFI	GGGAC	2 cut(s)	278, 596
BsmI	GAATGC	1 cut(s)	989
BsnI	GGCC	2 cut(s)	657, 702
Bso31I	GGTCTC	1 cut(s)	1007
BsoBI	CYCGRG	1 cut(s)	949
Bsp1407I	TGTACA	1 cut(s)	252
Bsp143I	GATC	4 cut(s)	552, 615, 694, 799
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	3 cut(s)	939, 1039, 1073
BspANI	GGCC	2 cut(s)	657, 702
BspDI	ATCGAT	1 cut(s)	618
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	403
BspPI	GGATC	2 cut(s)	689, 807
BspT107I	GGYRCC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	1007
BsrBI	CCGCTC	1 cut(s)	1039
BsrFI	RCCGGY	1 cut(s)	657
BsrGI	TGTACA	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	657
BssECI	CCNNGG	3 cut(s)	337, 579, 792
BssMI	GATC	4 cut(s)	552, 615, 694, 799
BssT1I	CCWWGG	1 cut(s)	337
Bst2UI	CCWGG	3 cut(s)	592, 793, 1018
Bst4CI	ACNGT	2 cut(s)	44, 257
BstAPI	GCANNNNNTGC	1 cut(s)	1070
BstAUI	TGTACA	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	5 cut(s)	95, 111, 544, 721, 958
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	4 cut(s)	555, 618, 697, 802
BstMAI	GTCTC	1 cut(s)	1007
BstMBI	GATC	4 cut(s)	552, 615, 694, 799
BstMWI	GCNNNNNNNGC	1 cut(s)	1070
BstNI	CCWGG	3 cut(s)	592, 793, 1018
BstNSI	RCATGY	1 cut(s)	922
BstSCI	CCNGG	5 cut(s)	578, 590, 697, 791, 1016
BstV1I	GCAGC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	799
BstXI	CCANNNNNNTGG	1 cut(s)	1056
BstYI	RGATCY	1 cut(s)	799
Bsu15I	ATCGAT	1 cut(s)	618
BsuI	GTATCC	1 cut(s)	676
BsuRI	GGCC	2 cut(s)	657, 702
BsuTUI	ATCGAT	1 cut(s)	618
BtgI	CCRYGG	1 cut(s)	337
BtrI	CACGTC	1 cut(s)	245
BtsCI	GGATG	5 cut(s)	95, 111, 544, 721, 958
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	2 cut(s)	262, 1068
Cac8I	GCNNGC	1 cut(s)	134
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	1 cut(s)	174
Cfr10I	RCCGGY	1 cut(s)	657
ClaI	ATCGAT	1 cut(s)	618
Csp6I	GTAC	2 cut(s)	253, 439
CviAII	CATG	9 cut(s)	305, 338, 424, 704, 919, 928, 979, 1022, 1056
CviQI	GTAC	2 cut(s)	253, 439
DpnI	GATC	4 cut(s)	554, 617, 696, 801
DpnII	GATC	4 cut(s)	552, 615, 694, 799
EaeI	YGGCCR	1 cut(s)	700
Eco130I	CCWWGG	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	1007
Eco32I	GATATC	1 cut(s)	631
Eco88I	CYCGRG	1 cut(s)	949
EcoRII	CCWGG	3 cut(s)	590, 791, 1016
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	9 cut(s)	308, 341, 427, 707, 922, 931, 982, 1025, 1059
FaqI	GGGAC	2 cut(s)	278, 596
FatI	CATG	9 cut(s)	304, 337, 423, 703, 918, 927, 978, 1021, 1055
FauNDI	CATATG	1 cut(s)	1085
FbaI	TGATCA	1 cut(s)	552
Fnu4HI	GCNGC	2 cut(s)	170, 1074
FokI	GGATG	5 cut(s)	82, 98, 551, 708, 945
Fsp4HI	GCNGC	2 cut(s)	170, 1074
FspBI	CTAG	4 cut(s)	371, 380, 563, 675
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	2 cut(s)	170, 1074
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	657, 702
HapII	CCGG	3 cut(s)	579, 658, 699
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	9 cut(s)	308, 341, 427, 707, 922, 931, 982, 1025, 1059
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	3 cut(s)	712, 771, 994
HindII	GTYRAC	3 cut(s)	712, 771, 994
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	4 cut(s)	74, 217, 595, 689
HpaI	GTTAAC	1 cut(s)	712
HpaII	CCGG	3 cut(s)	579, 658, 699
HphI	GGTGA	2 cut(s)	385, 562
Hpy166II	GTNNAC	4 cut(s)	385, 712, 771, 994
Hpy188I	TCNGA	3 cut(s)	162, 604, 694
Hpy188III	TCNNGA	4 cut(s)	71, 305, 838, 911
Hpy8I	GTNNAC	4 cut(s)	385, 712, 771, 994
Hpy99I	CGWCG	2 cut(s)	314, 362
HpyAV	CCTTC	2 cut(s)	138, 157
HpyCH4III	ACNGT	2 cut(s)	44, 257
HpyCH4IV	ACGT	2 cut(s)	244, 708
HpyCH4V	TGCA	3 cut(s)	132, 922, 1064
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1070
HpySE526I	ACGT	2 cut(s)	244, 708
Hsp92II	CATG	9 cut(s)	308, 341, 427, 707, 922, 931, 982, 1025, 1059
HspAI	GCGC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	552
KspAI	GTTAAC	1 cut(s)	712
Kzo9I	GATC	4 cut(s)	552, 615, 694, 799
LmnI	GCTCC	2 cut(s)	166, 605
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	843
MaeI	CTAG	4 cut(s)	371, 380, 563, 675
MaeII	ACGT	2 cut(s)	244, 708
MaeIII	GTNAC	4 cut(s)	185, 259, 373, 1029
MalI	GATC	4 cut(s)	554, 617, 696, 801
MbiI	CCGCTC	1 cut(s)	1039
MboI	GATC	4 cut(s)	552, 615, 694, 799
MboII	GAAGA	6 cut(s)	19, 29, 94, 324, 764, 819
MflI	RGATCY	1 cut(s)	799
MluCI	AATT	6 cut(s)	32, 198, 364, 642, 823, 964
MlyI	GAGTC	1 cut(s)	589
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	4 cut(s)	185, 392, 529, 790
MseI	TTAA	5 cut(s)	155, 288, 573, 711, 998
MspI	CCGG	3 cut(s)	579, 658, 699
MspR9I	CCNGG	5 cut(s)	580, 592, 699, 793, 1018
Mva1269I	GAATGC	1 cut(s)	989
MvaI	CCWGG	3 cut(s)	592, 793, 1018
MwoI	GCNNNNNNNGC	1 cut(s)	1070
NciI	CCSGG	2 cut(s)	580, 699
NcoI	CCATGG	1 cut(s)	337
NdeI	CATATG	1 cut(s)	1085
NdeII	GATC	4 cut(s)	552, 615, 694, 799
NlaIII	CATG	9 cut(s)	308, 341, 427, 707, 922, 931, 982, 1025, 1059
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	2 cut(s)	185, 259
NspI	RCATGY	1 cut(s)	922
PagI	TCATGA	1 cut(s)	304
PctI	GAATGC	1 cut(s)	989
PfeI	GAWTC	3 cut(s)	74, 217, 689
PkrI	GCNGC	2 cut(s)	171, 1075
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
Psp6I	CCWGG	3 cut(s)	590, 791, 1016
PspGI	CCWGG	3 cut(s)	590, 791, 1016
PspN4I	GGNNCC	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	799
RsaI	GTAC	2 cut(s)	254, 440
RsaNI	GTAC	2 cut(s)	253, 439
SaqAI	TTAA	5 cut(s)	155, 288, 573, 711, 998
SatI	GCNGC	2 cut(s)	170, 1074
Sau3AI	GATC	4 cut(s)	552, 615, 694, 799
SchI	GAGTC	1 cut(s)	589
ScrFI	CCNGG	5 cut(s)	580, 592, 699, 793, 1018
SfaNI	GCATC	1 cut(s)	843
SpeI	ACTAGT	1 cut(s)	674
Sse9I	AATT	6 cut(s)	32, 198, 364, 642, 823, 964
SsiI	CCGC	3 cut(s)	939, 1039, 1073
SspMI	CTAG	4 cut(s)	371, 380, 563, 675
StyD4I	CCNGG	5 cut(s)	578, 590, 697, 791, 1016
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	2 cut(s)	44, 257
TaiI	ACGT	2 cut(s)	247, 711
TaqI	TCGA	5 cut(s)	77, 105, 618, 788, 968
TasI	AATT	6 cut(s)	32, 198, 364, 642, 823, 964
TatI	WGTACW	2 cut(s)	252, 438
TauI	GCSGC	1 cut(s)	1076
TfiI	GAWTC	3 cut(s)	74, 217, 689
Tru1I	TTAA	5 cut(s)	155, 288, 573, 711, 998
Tru9I	TTAA	5 cut(s)	155, 288, 573, 711, 998
TscAI	CASTG	2 cut(s)	262, 1075
TseFI	GTSAC	2 cut(s)	185, 259
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	2 cut(s)	185, 259
TspDTI	ATGAA	4 cut(s)	531, 710, 933, 967
TspRI	CASTG	2 cut(s)	262, 1075
XapI	RAATTY	2 cut(s)	32, 964
XceI	RCATGY	1 cut(s)	922
XspI	CTAG	4 cut(s)	371, 380, 563, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.