Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000850

Physical Location & Seq

Genomic Coordinates Forward (+)

35569578 .. 35571520

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g42570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTGGAGAAAGACAGCTAGTGCAGTTAAAGATCAAGTTGGTGACATCCACACAAGGCTCATGAAGAAGAACTATGAAGCAGTCCCTCAATGGTGGTTTCACATCATCCTTGTCTCAATGGTTGGTCTTGCAATTTTCGCTTGTGAAGGTTTTGGCAAACAGCTCCAACTTCCATGGTGGGGAGTTCTAATGGCTTGTGGCATTGCATTGTTCTTCACCTTACCCATTGGCATCATTCAAGCAACAACAAATCAGCAACCTGGGCTTAATGTGATCACAGAGTTGGTTATCGGGTATATTTATCCAGGTAGGCCTCTTGCAAATGTCGCTTTCAAGACCTATGGCTATATCAGCATGTCACAAGCACTCATGTTTCTCGGTGACTTTAAATTGGGTCACTATATGAAGATCCCTCCAAAGTCCATGTTTATTGTTCAGTTAGCTGGAACAGTAGTTGCTTCTAGTGTCTACTTTGCTACATCTTGGTGGCTTCTCCATTCCATCGAAAACATCTGCGATGTCTCATTGTTGCCTGAAGGAAGTCCATGGACGTGTCTCGGGGATGATGTCTTCTACAATGCTTCGATCATATGGGGAGTTATCGGTCCACTCAGAATGTTCACAAAGAAAGGCATCTACCCGGAGTTGAACTGGTTCTTCCTCATCGGTTTAATTGCACCTGTTCCAATCTGGTTCTTTGCCAAGAAACTCCCAAACCAAAAGTGGATTAGGCTCATAAACATGCCTATCATTCTTGGAGCAACAGGGTCTATGCCTCCTGCAAGATCTGTCAACTATATTACATGGTTAGCAGTTGGAATCTTCTTCAACTTTTATGTGTACAGAAAGTTCAAGGGGTGGTGGGCTAGGCATAACTACATTCTATCAGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

299

Amino Acids

33.86

Weight (kDa)

9.57

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	8 - 298	8.5e-71	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26590 AT5G55930
fragaria_vesca	FvH4_3g42570 FvH4_3g42651 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660
malus_domestica	MD03G1029800.v1.1 MD03G1029900.v1.1 MD03G1030000.v1.1 MD07G1217200.v1.1 MD11G1034800.v1.1 MD11G1035000.v1.1 MD11G1035100.v1.1
prunus_persica	Prupe.6G026000_v2.0.a1 Prupe.6G026100_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026300_v2.0.a1
pyrus_communis	pycom03g02480 pycom03g02500 pycom11g02890 pycom11g02900
rosa_chinensis	RchiOBHm_Chr5g0076291 RchiOBHm_Chr5g0076301 RchiOBHm_Chr5g0076311 RchiOBHm_Chr5g0076621 RchiOBHm_Chr5g0076671
rosa_laevigata	RLG00000036614 RLG00000036615 RLG00000036616 RLG00000036617
rosa_multiflora	Rmu_co8320621.1_g000001 Rmu_co8419599.1_g000001 Rmu_co8455339.1_g000001 Rmu_sc0005961.1_g000002 Rmu_sc0005961.1_g000003 Rmu_sc0013948.1_g000002 Rmu_sc0035770.1_g000001 Rmu_sc0040547.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005490 Rroxscaffold_1G00005550 Rroxscaffold_1G00005560 Rroxscaffold_1G00005570
rosa_rugosa	Rorug05G0446700.1 Rorug05G0447000 Rorug05G0447100 Rorug05G0447200 Rorug05G0447200 Rorug05G0447300
rosa_samantha	Rh5AG501900 Rh5AG502000 Rh5AG502100 Rh5BG523700 Rh5BG523800 Rh5BG523900 Rh5CG547400 Rh5CG547500 Rh5CG547600 Rh5DG535900 Rh5DG536000 Rh5DG536100 Rh7AG436800
rosa_wichuraiana	Rw0G015040 Rw0G015060 Rw5G046590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	468
AclWI	GGATC	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	555
AfaI	GTAC	1 cut(s)	842
AfiI	CCNNNNNNNGG	1 cut(s)	179
AflIII	ACRYGT	1 cut(s)	551
AgsI	TTSAA	5 cut(s)	239, 334, 649, 829, 853
AjiI	CACGTC	1 cut(s)	552
AjnI	CCWGG	2 cut(s)	259, 304
AluBI	AGCT	4 cut(s)	17, 163, 443, 890
AluI	AGCT	4 cut(s)	17, 163, 443, 890
Alw26I	GTCTC	3 cut(s)	118, 526, 560
AlwI	GGATC	1 cut(s)	403
Ama87I	CYCGRG	1 cut(s)	557
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	1 cut(s)	890
Asp700I	GAANNNNTTC	1 cut(s)	653
AspS9I	GGNCC	1 cut(s)	605
AsuC2I	CCSGG	1 cut(s)	641
AsuHPI	GGTGA	3 cut(s)	53, 208, 392
AvaI	CYCGRG	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	562
BbvI	GCAGC	1 cut(s)	877
BccI	CCATC	1 cut(s)	509
BciT130I	CCWGG	2 cut(s)	261, 306
BclI	TGATCA	1 cut(s)	273
BcnI	CCSGG	1 cut(s)	641
BcoDI	GTCTC	3 cut(s)	118, 526, 560
BfaI	CTAG	3 cut(s)	18, 462, 867
BglII	AGATCT	1 cut(s)	785
BisI	GCNGC	1 cut(s)	891
BlsI	GCNGC	1 cut(s)	892
Bme1390I	CCNGG	3 cut(s)	261, 306, 641
Bme18I	GGWCC	1 cut(s)	605
BmeT110I	CYCGRG	1 cut(s)	557
BmgBI	CACGTC	1 cut(s)	552
BmgT120I	GGNCC	1 cut(s)	605
BmrFI	CCNGG	3 cut(s)	261, 306, 641
BmsI	GCATC	2 cut(s)	240, 642
BpiI	GAAGAC	1 cut(s)	562
BpuMI	CCSGG	1 cut(s)	641
BsaJI	CCNNGG	3 cut(s)	173, 260, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	656
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	261, 306
BseDI	CCNNGG	3 cut(s)	173, 260, 545
BseGI	GGATG	3 cut(s)	45, 105, 568
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	625
BseNI	ACTGG	1 cut(s)	656
BseXI	GCAGC	1 cut(s)	877
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	557
BsiSI	CCGG	1 cut(s)	641
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	3 cut(s)	118, 526, 560
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	557
Bsp1407I	TGTACA	1 cut(s)	840
Bsp143I	GATC	5 cut(s)	31, 273, 408, 585, 785
Bsp19I	CCATGG	2 cut(s)	173, 545
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	1 cut(s)	624
BspHI	TCATGA	1 cut(s)	60
BspPI	GGATC	1 cut(s)	403
BsrDI	GCAATG	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	840
BsrI	ACTGG	1 cut(s)	656
BssECI	CCNNGG	3 cut(s)	173, 260, 545
BssMI	GATC	5 cut(s)	31, 273, 408, 585, 785
BssT1I	CCWWGG	2 cut(s)	173, 545
Bst2UI	CCWGG	2 cut(s)	261, 306
Bst4CI	ACNGT	1 cut(s)	451
BstAUI	TGTACA	1 cut(s)	840
BstDEI	CTNAG	2 cut(s)	611, 894
BstDSI	CCRYGG	2 cut(s)	173, 545
BstF5I	GGATG	3 cut(s)	45, 105, 568
BstKTI	GATC	5 cut(s)	34, 276, 411, 588, 788
BstMAI	GTCTC	3 cut(s)	118, 526, 560
BstMBI	GATC	5 cut(s)	31, 273, 408, 585, 785
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 262, 326, 351
BstNI	CCWGG	2 cut(s)	261, 306
BstNSI	RCATGY	2 cut(s)	358, 745
BstSCI	CCNGG	3 cut(s)	259, 304, 639
BstV1I	GCAGC	1 cut(s)	877
BstV2I	GAAGAC	1 cut(s)	562
BstX2I	RGATCY	2 cut(s)	408, 785
BstYI	RGATCY	2 cut(s)	408, 785
BsuRI	GGCC	1 cut(s)	313
BtgI	CCRYGG	2 cut(s)	173, 545
BtgZI	GCGATG	1 cut(s)	531
BtrI	CACGTC	1 cut(s)	552
BtsCI	GGATG	3 cut(s)	45, 105, 568
CciI	TCATGA	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	605
Csp6I	GTAC	1 cut(s)	841
CviAII	CATG	8 cut(s)	61, 174, 355, 370, 424, 546, 742, 804
CviQI	GTAC	1 cut(s)	841
DdeI	CTNAG	2 cut(s)	611, 894
DpnI	GATC	5 cut(s)	33, 275, 410, 587, 787
DpnII	GATC	5 cut(s)	31, 273, 408, 585, 785
DraI	TTTAAA	1 cut(s)	388
Eco130I	CCWWGG	2 cut(s)	173, 545
Eco147I	AGGCCT	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	555
Eco88I	CYCGRG	1 cut(s)	557
EcoRII	CCWGG	2 cut(s)	259, 304
EcoT14I	CCWWGG	2 cut(s)	173, 545
ErhI	CCWWGG	2 cut(s)	173, 545
FaeI	CATG	8 cut(s)	64, 177, 358, 373, 427, 549, 745, 807
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	8 cut(s)	60, 173, 354, 369, 423, 545, 741, 803
FauNDI	CATATG	1 cut(s)	590
FbaI	TGATCA	1 cut(s)	273
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	1 cut(s)	891
FokI	GGATG	3 cut(s)	32, 92, 575
Fsp4HI	GCNGC	1 cut(s)	891
FspBI	CTAG	3 cut(s)	18, 462, 867
GluI	GCNGC	1 cut(s)	891
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	1 cut(s)	641
Hin1II	CATG	8 cut(s)	64, 177, 358, 373, 427, 549, 745, 807
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HinfI	GANTC	1 cut(s)	819
HpaII	CCGG	1 cut(s)	641
HphI	GGTGA	3 cut(s)	53, 208, 392
Hpy166II	GTNNAC	5 cut(s)	469, 608, 621, 793, 841
Hpy188I	TCNGA	1 cut(s)	614
Hpy188III	TCNNGA	2 cut(s)	61, 334
Hpy8I	GTNNAC	5 cut(s)	469, 608, 621, 793, 841
HpyAV	CCTTC	2 cut(s)	140, 530
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4IV	ACGT	1 cut(s)	551
HpyCH4V	TGCA	6 cut(s)	23, 131, 206, 320, 677, 782
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 262, 326, 351
HpyF3I	CTNAG	2 cut(s)	611, 894
HpySE526I	ACGT	1 cut(s)	551
Hsp92II	CATG	8 cut(s)	64, 177, 358, 373, 427, 549, 745, 807
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	5 cut(s)	31, 273, 408, 585, 785
LmnI	GCTCC	2 cut(s)	168, 758
Lsp1109I	GCAGC	1 cut(s)	877
LweI	GCATC	2 cut(s)	240, 642
MaeI	CTAG	3 cut(s)	18, 462, 867
MaeII	ACGT	1 cut(s)	551
MaeIII	GTNAC	4 cut(s)	41, 357, 380, 395
MalI	GATC	5 cut(s)	33, 275, 410, 587, 787
MboI	GATC	5 cut(s)	31, 273, 408, 585, 785
MboII	GAAGA	8 cut(s)	76, 79, 205, 418, 562, 649, 814, 817
MflI	RGATCY	2 cut(s)	408, 785
MluCI	AATT	3 cut(s)	132, 389, 672
MmeI	TCCRAC	2 cut(s)	190, 796
MnlI	CCTC	5 cut(s)	96, 324, 423, 671, 786
MroXI	GAANNNNTTC	1 cut(s)	653
MseI	TTAA	4 cut(s)	27, 267, 387, 671
MslI	CAYNNNNRTG	3 cut(s)	484, 550, 740
MspA1I	CMGCKG	1 cut(s)	890
MspI	CCGG	1 cut(s)	641
MspR9I	CCNGG	3 cut(s)	261, 306, 641
MvaI	CCWGG	2 cut(s)	261, 306
MwoI	GCNNNNNNNGC	4 cut(s)	137, 262, 326, 351
NciI	CCSGG	1 cut(s)	641
NcoI	CCATGG	2 cut(s)	173, 545
NdeI	CATATG	1 cut(s)	590
NdeII	GATC	5 cut(s)	31, 273, 408, 585, 785
NlaIII	CATG	8 cut(s)	64, 177, 358, 373, 427, 549, 745, 807
NmuCI	GTSAC	4 cut(s)	41, 357, 380, 395
NspI	RCATGY	2 cut(s)	358, 745
PagI	TCATGA	1 cut(s)	60
PceI	AGGCCT	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	1 cut(s)	819
PkrI	GCNGC	1 cut(s)	892
Psp6I	CCWGG	2 cut(s)	259, 304
PspGI	CCWGG	2 cut(s)	259, 304
PspPI	GGNCC	1 cut(s)	605
PsrI	GAACNNNNNNTAC	2 cut(s)	833, 865
PsuI	RGATCY	2 cut(s)	408, 785
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	1 cut(s)	842
RsaNI	GTAC	1 cut(s)	841
RseI	CAYNNNNRTG	3 cut(s)	484, 550, 740
SaqAI	TTAA	4 cut(s)	27, 267, 387, 671
SatI	GCNGC	1 cut(s)	891
Sau3AI	GATC	5 cut(s)	31, 273, 408, 585, 785
Sau96I	GGNCC	1 cut(s)	605
ScrFI	CCNGG	3 cut(s)	261, 306, 641
SfaNI	GCATC	2 cut(s)	240, 642
SinI	GGWCC	1 cut(s)	605
SmiMI	CAYNNNNRTG	3 cut(s)	484, 550, 740
Sse9I	AATT	3 cut(s)	132, 389, 672
SseBI	AGGCCT	1 cut(s)	313
SspMI	CTAG	3 cut(s)	18, 462, 867
StuI	AGGCCT	1 cut(s)	313
StyD4I	CCNGG	3 cut(s)	259, 304, 639
StyI	CCWWGG	2 cut(s)	173, 545
TaaI	ACNGT	1 cut(s)	451
TaiI	ACGT	1 cut(s)	554
TaqI	TCGA	2 cut(s)	504, 584
TaqII	GACCGA	1 cut(s)	593
TasI	AATT	3 cut(s)	132, 389, 672
TatI	WGTACW	1 cut(s)	840
TfiI	GAWTC	1 cut(s)	819
Tru1I	TTAA	4 cut(s)	27, 267, 387, 671
Tru9I	TTAA	4 cut(s)	27, 267, 387, 671
TseFI	GTSAC	4 cut(s)	41, 357, 380, 395
TseI	GCWGC	1 cut(s)	890
Tsp45I	GTSAC	4 cut(s)	41, 357, 380, 395
TspDTI	ATGAA	3 cut(s)	77, 90, 419
VpaK11BI	GGWCC	1 cut(s)	605
XceI	RCATGY	2 cut(s)	358, 745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	720
XmiI	GTMKAC	1 cut(s)	468
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	3 cut(s)	18, 462, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.