Rmu_sc0040547.1_g000001

oligopeptide transporter

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040547.1
Physical Location & Seq
Forward (+)
1 .. 199
199 bp
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UTR
Exon/CDS
Intron
Rmu_sc0040547.1_g000001.1.cds

Sequence Viewer

Length: 199 bp
ttggtggaggagacacaactatcttctttctggggcacttgatgctggtcttgcctttatgggggtactgttgtattttgccgttggattggaagacattagtcccaactggtggggaaatgaccttgatgggtgccccttggctcaatgccctacagccgtaggggtggttgttgaaggctgccctgtttacacttga

Protein Analysis

65

Amino Acids

7.1

Weight (kDa)

4.23

Isoelectric Point (pI)

34.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 133
AccB7I CCANNNNNTGG 1 cut(s) 112
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 2 cut(s) 61, 112
AgsI TTSAA 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 181
BaeGI GKGCMC 2 cut(s) 38, 138
BaeI ACNNNNGTAYC 2 cut(s) 57, 90
BanI GGYRCC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 168
BccI CCATC 1 cut(s) 123
BceAI ACGGC 2 cut(s) 66, 144
BcoDI GTCTC 1 cut(s) 5
BfmI CTRYAG 1 cut(s) 154
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 1 cut(s) 32
BoxI GACNNNNGTC 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 112
Bse1I ACTGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 139
BseLI CCNNNNNNNGG 2 cut(s) 61, 112
BseNI ACTGG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 2 cut(s) 38, 138
BseXI GCAGC 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 133
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 61, 112
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 38, 138
BspLI GGNNCC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 133
BsrI ACTGG 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 42
BstMAI GTCTC 1 cut(s) 5
BstMWI GCNNNNNNNGC 2 cut(s) 42, 51
BstPAI GACNNNNGTC 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 154
BstSLI GKGCMC 2 cut(s) 38, 138
BstV1I GCAGC 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 66
CviJI RGCY 3 cut(s) 144, 159, 181
CviKI_1 RGCY 3 cut(s) 144, 159, 181
CviQI GTAC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaiI YATR 1 cut(s) 60
FaqI GGGAC 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 182
GluI GCNGC 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 171
HpyCH4III ACNGT 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 51
LpnPI CCDG 3 cut(s) 16, 31, 95
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 1 cut(s) 32
MboII GAAGA 2 cut(s) 15, 105
MhlI GDGCHC 2 cut(s) 38, 138
MmeI TCCRAC 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 42, 51
NlaIV GGNNCC 1 cut(s) 135
PflMI CCANNNNNTGG 1 cut(s) 112
PkrI GCNGC 1 cut(s) 183
PshAI GACNNNNGTC 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 135
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
SatI GCNGC 1 cut(s) 182
SduI GDGCHC 2 cut(s) 38, 138
SetI ASST 1 cut(s) 127
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 154
SgeI CNNG 7 cut(s) 43, 51, 58, 63, 122, 138, 152
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 70
TseI GCWGC 1 cut(s) 181
Van91I CCANNNNNTGG 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.