Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000850

Physical Location & Seq

Genomic Coordinates Forward (+)

2064771 .. 2065342

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G026000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCAACTTAACTCTCAACATGCTGATGATGTGTTCTACAATGCATCAATCATTTGGGGGGTCATTGGCCCCCTCAGAATGTTCACTGACAAAGGAGTCTACCCAGAGCTTAACTGGTTCTTCCTCATTCGCTTATTGGCACCTGTTCCTGTTTGGTTGCTCTCTAAACAATTTCCCAACCAAAGGTGGATCGAGCTCATAAACATGCCCATTATACTTGGAGCCACAGAAAGTACCAAGGGCTGGTGGGCTAGGCACAACTATATCCTCTCTGCTTCTTTGGATGCTGGTGTGGCCTTCACAGCAGTTCTGCTATATTTCACCCTCCAATCCAAGGATATCATGGGTCCAAACTGGTGGGGCCAGGAAGCTGATGACCATTGCCCGCTGGCCACGTGTCCCACGGCACCGGGTATAGTTGCCAAAGGCTGTCCAGTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

148

Amino Acids

16.53

Weight (kDa)

5.82

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26590 AT5G55930
fragaria_vesca	FvH4_3g42570 FvH4_3g42651 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660
malus_domestica	MD03G1029800.v1.1 MD03G1029900.v1.1 MD03G1030000.v1.1 MD07G1217200.v1.1 MD11G1034800.v1.1 MD11G1035000.v1.1 MD11G1035100.v1.1
prunus_persica	Prupe.6G026000_v2.0.a1 Prupe.6G026100_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026300_v2.0.a1
pyrus_communis	pycom03g02480 pycom03g02500 pycom11g02890 pycom11g02900
rosa_chinensis	RchiOBHm_Chr5g0076291 RchiOBHm_Chr5g0076301 RchiOBHm_Chr5g0076311 RchiOBHm_Chr5g0076621 RchiOBHm_Chr5g0076671
rosa_laevigata	RLG00000036614 RLG00000036615 RLG00000036616 RLG00000036617
rosa_multiflora	Rmu_co8320621.1_g000001 Rmu_co8419599.1_g000001 Rmu_co8455339.1_g000001 Rmu_sc0005961.1_g000002 Rmu_sc0005961.1_g000003 Rmu_sc0013948.1_g000002 Rmu_sc0035770.1_g000001 Rmu_sc0040547.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005490 Rroxscaffold_1G00005550 Rroxscaffold_1G00005560 Rroxscaffold_1G00005570
rosa_rugosa	Rorug05G0446700.1 Rorug05G0447000 Rorug05G0447100 Rorug05G0447200 Rorug05G0447200 Rorug05G0447300
rosa_samantha	Rh5AG501900 Rh5AG502000 Rh5AG502100 Rh5BG523700 Rh5BG523800 Rh5BG523900 Rh5CG547400 Rh5CG547500 Rh5CG547600 Rh5DG535900 Rh5DG536000 Rh5DG536100 Rh7AG436800
rosa_wichuraiana	Rw0G015040 Rw0G015060 Rw5G046590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccB1I	GGYRCC	2 cut(s)	139, 406
AccB7I	CCANNNNNTGG	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	390
AcvI	CACGTG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	3 cut(s)	183, 243, 334
AflIII	ACRYGT	1 cut(s)	395
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	3 cut(s)	109, 196, 371
AluI	AGCT	3 cut(s)	109, 196, 371
Alw21I	GWGCWC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	4 cut(s)	67, 294, 361, 390
AspS9I	GGNCC	3 cut(s)	68, 347, 361
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	347
BalI	TGGCCA	1 cut(s)	392
BanI	GGYRCC	2 cut(s)	139, 406
BanII	GRGCYC	1 cut(s)	198
BbrPI	CACGTG	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	198
BceAI	ACGGC	1 cut(s)	420
BciT130I	CCWGG	1 cut(s)	365
BcnI	CCSGG	1 cut(s)	411
BfaI	CTAG	1 cut(s)	252
Bme1390I	CCNGG	2 cut(s)	365, 411
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	3 cut(s)	68, 347, 361
BmiI	GGNNCC	6 cut(s)	70, 141, 223, 348, 362, 408
BmrFI	CCNGG	2 cut(s)	365, 411
BmsI	GCATC	2 cut(s)	53, 274
BpuMI	CCSGG	1 cut(s)	411
BsaAI	YACGTR	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	237, 333, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 243, 334
Bse1I	ACTGG	3 cut(s)	119, 359, 434
Bse3DI	GCAATG	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	3 cut(s)	237, 333, 402
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	3 cut(s)	183, 243, 334
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	3 cut(s)	119, 359, 434
BshFI	GGCC	4 cut(s)	69, 296, 363, 392
BshNI	GGYRCC	2 cut(s)	139, 406
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	3 cut(s)	183, 243, 334
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	4 cut(s)	69, 296, 363, 392
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	4 cut(s)	69, 296, 363, 392
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	6 cut(s)	70, 141, 223, 348, 362, 408
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	2 cut(s)	139, 406
BsrDI	GCAATG	1 cut(s)	379
BsrI	ACTGG	3 cut(s)	119, 359, 434
BssECI	CCNNGG	3 cut(s)	237, 333, 402
BssMI	GATC	1 cut(s)	189
BssT1I	CCWWGG	2 cut(s)	237, 333
Bst2UI	CCWGG	1 cut(s)	365
BstBAI	YACGTR	1 cut(s)	396
BstC8I	GCNNGC	2 cut(s)	386, 390
BstDEI	CTNAG	1 cut(s)	74
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 302
BstNI	CCWGG	1 cut(s)	365
BstNSI	RCATGY	2 cut(s)	23, 208
BstSCI	CCNGG	2 cut(s)	363, 409
BstXI	CCANNNNNNTGG	1 cut(s)	357
BsuRI	GGCC	4 cut(s)	69, 296, 363, 392
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	386, 390
Cfr13I	GGNCC	3 cut(s)	68, 347, 361
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	3 cut(s)	20, 205, 343
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
EaeI	YGGCCR	1 cut(s)	390
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	2 cut(s)	237, 333
Eco24I	GRGCYC	1 cut(s)	198
Eco32I	GATATC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	347
Eco53kI	GAGCTC	1 cut(s)	196
Eco72I	CACGTG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	363
EcoRV	GATATC	1 cut(s)	340
EcoT14I	CCWWGG	2 cut(s)	237, 333
EcoT22I	ATGCAT	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	2 cut(s)	237, 333
FaeI	CATG	3 cut(s)	23, 208, 346
FaiI	YATR	8 cut(s)	21, 200, 206, 215, 264, 316, 344, 416
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	3 cut(s)	19, 204, 342
FauI	CCCGC	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	99
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	252
HaeIII	GGCC	4 cut(s)	69, 296, 363, 392
HapII	CCGG	1 cut(s)	410
Hin1II	CATG	3 cut(s)	23, 208, 346
HinfI	GANTC	1 cut(s)	96
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	2 cut(s)	84, 100
Hpy188I	TCNGA	2 cut(s)	77, 443
Hpy8I	GTNNAC	2 cut(s)	84, 100
HpyAV	CCTTC	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	2 cut(s)	4, 44
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 302
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	3 cut(s)	23, 208, 346
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	221
LweI	GCATC	2 cut(s)	53, 274
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	395
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	198
MlsI	TGGCCA	1 cut(s)	392
MluCI	AATT	1 cut(s)	170
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	1 cut(s)	105
MnlI	CCTC	4 cut(s)	83, 134, 278, 335
Mox20I	TGGCCA	1 cut(s)	392
Mph1103I	ATGCAT	1 cut(s)	46
MscI	TGGCCA	1 cut(s)	392
MseI	TTAA	2 cut(s)	9, 111
MslI	CAYNNNNRTG	2 cut(s)	24, 203
Msp20I	TGGCCA	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	2 cut(s)	365, 411
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	293, 302
NciI	CCSGG	1 cut(s)	411
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	3 cut(s)	23, 208, 346
NlaIV	GGNNCC	6 cut(s)	70, 141, 223, 348, 362, 408
NsiI	ATGCAT	1 cut(s)	46
NspI	RCATGY	2 cut(s)	23, 208
PflMI	CCANNNNNTGG	1 cut(s)	243
PleI	GAGTC	1 cut(s)	104
PmaCI	CACGTG	1 cut(s)	396
PmlI	CACGTG	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	104
Ppu21I	YACGTR	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	363
PspCI	CACGTG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	6 cut(s)	70, 141, 223, 348, 362, 408
PspPI	GGNCC	3 cut(s)	68, 347, 361
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	2 cut(s)	24, 203
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	9, 111
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	3 cut(s)	68, 347, 361
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	2 cut(s)	365, 411
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	6 cut(s)	111, 145, 188, 198, 373, 398
SfaNI	GCATC	2 cut(s)	53, 274
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	2 cut(s)	24, 203
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	1 cut(s)	252
SstI	GAGCTC	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	363, 409
StyI	CCWWGG	2 cut(s)	237, 333
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	9, 111
Tru9I	TTAA	2 cut(s)	9, 111
TscAI	CASTG	1 cut(s)	91
TspRI	CASTG	1 cut(s)	91
Van91I	CCANNNNNTGG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	347
XceI	RCATGY	2 cut(s)	23, 208
XcmI	CCANNNNNNNNNTGG	2 cut(s)	111, 340
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.