Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035770.1

Orthogroup ID

OG0000850

Physical Location & Seq

Genomic Coordinates Reverse (-)

2082 .. 2525

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035770.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgttcaccagcaaaggcatctatccggagttgaactggttcttcctcatcggtttactcgcacctgttccaatctggttcttctccaagaaattcccaaatcaaaagtggattaagctcataaacatgcctatcattcttggagcaactgggagtatgccacctgctagatctgtcaactacattacctggatagcagttggtatcttcttcaacttctatgtgtacagaaagttcaagggctggtgggctaggcataattacatcctctcagccgctttggatgctggtttggccttcacagcagttctcttatacttctcacttcaaagtaagaatattatagggccaaactggtggggtcttgacaatgatgaccactgcccattggccagttgccctactgcaccaggaatagtggccaaagggtgcccagttctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

147

Amino Acids

16.62

Weight (kDa)

9.51

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26590 AT5G55930
fragaria_vesca	FvH4_3g42570 FvH4_3g42651 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660
malus_domestica	MD03G1029800.v1.1 MD03G1029900.v1.1 MD03G1030000.v1.1 MD07G1217200.v1.1 MD11G1034800.v1.1 MD11G1035000.v1.1 MD11G1035100.v1.1
prunus_persica	Prupe.6G026000_v2.0.a1 Prupe.6G026100_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026300_v2.0.a1
pyrus_communis	pycom03g02480 pycom03g02500 pycom11g02890 pycom11g02900
rosa_chinensis	RchiOBHm_Chr5g0076291 RchiOBHm_Chr5g0076301 RchiOBHm_Chr5g0076311 RchiOBHm_Chr5g0076621 RchiOBHm_Chr5g0076671
rosa_laevigata	RLG00000036614 RLG00000036615 RLG00000036616 RLG00000036617
rosa_multiflora	Rmu_co8320621.1_g000001 Rmu_co8419599.1_g000001 Rmu_co8455339.1_g000001 Rmu_sc0005961.1_g000002 Rmu_sc0005961.1_g000003 Rmu_sc0013948.1_g000002 Rmu_sc0035770.1_g000001 Rmu_sc0040547.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005490 Rroxscaffold_1G00005550 Rroxscaffold_1G00005560 Rroxscaffold_1G00005570
rosa_rugosa	Rorug05G0446700.1 Rorug05G0447000 Rorug05G0447100 Rorug05G0447200 Rorug05G0447200 Rorug05G0447300
rosa_samantha	Rh5AG501900 Rh5AG502000 Rh5AG502100 Rh5BG523700 Rh5BG523800 Rh5BG523900 Rh5CG547400 Rh5CG547500 Rh5CG547600 Rh5DG535900 Rh5DG536000 Rh5DG536100 Rh7AG436800
rosa_wichuraiana	Rw0G015040 Rw0G015060 Rw5G046590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	172
Acc36I	ACCTGC	1 cut(s)	172
AccB1I	GGYRCC	1 cut(s)	429
AccIII	TCCGGA	1 cut(s)	25
AciI	CCGC	1 cut(s)	276
AcoI	YGGCCR	2 cut(s)	390, 420
AcsI	RAATTY	1 cut(s)	92
AfaI	GTAC	1 cut(s)	227
AgsI	TTSAA	4 cut(s)	34, 214, 238, 329
AjnI	CCWGG	2 cut(s)	188, 409
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Aor13HI	TCCGGA	1 cut(s)	25
AoxI	GGCC	4 cut(s)	294, 347, 390, 420
ApoI	RAATTY	1 cut(s)	92
Asp700I	GAANNNNTTC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	434
BalI	TGGCCA	2 cut(s)	392, 422
BanI	GGYRCC	1 cut(s)	429
BciT130I	CCWGG	2 cut(s)	190, 411
BfaI	CTAG	2 cut(s)	168, 252
BfuAI	ACCTGC	1 cut(s)	172
BglII	AGATCT	1 cut(s)	170
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	190, 411
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	431
BmrFI	CCNGG	2 cut(s)	190, 411
BmrI	ACTGGG	2 cut(s)	159, 428
BmsI	GCATC	2 cut(s)	27, 274
BmuI	ACTGGG	2 cut(s)	159, 428
BsaWI	WCCGGW	1 cut(s)	25
Bse1I	ACTGG	5 cut(s)	41, 154, 359, 393, 434
BseAI	TCCGGA	1 cut(s)	25
BseBI	CCWGG	2 cut(s)	190, 411
BseGI	GGATG	2 cut(s)	264, 289
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	5 cut(s)	41, 154, 359, 393, 434
BseSI	GKGCMC	1 cut(s)	434
BsgI	GTGCAG	1 cut(s)	390
BshFI	GGCC	4 cut(s)	296, 349, 392, 422
BshNI	GGYRCC	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	26
BsnI	GGCC	4 cut(s)	296, 349, 392, 422
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp13I	TCCGGA	1 cut(s)	25
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	170
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	4 cut(s)	296, 349, 392, 422
BspCNI	CTCAG	1 cut(s)	284
BspEI	TCCGGA	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	431
BspMI	ACCTGC	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	429
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	5 cut(s)	41, 154, 359, 393, 434
BssMI	GATC	1 cut(s)	170
Bst2UI	CCWGG	2 cut(s)	190, 411
BstAUI	TGTACA	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	264, 289
BstKTI	GATC	1 cut(s)	173
BstMBI	GATC	1 cut(s)	170
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 293, 302
BstNI	CCWGG	2 cut(s)	190, 411
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	2 cut(s)	188, 409
BstSLI	GKGCMC	1 cut(s)	434
BstX2I	RGATCY	1 cut(s)	170
BstXI	CCANNNNNNTGG	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	170
BsuRI	GGCC	4 cut(s)	296, 349, 392, 422
BtsCI	GGATG	2 cut(s)	264, 289
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	379
BveI	ACCTGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	8 cut(s)	118, 243, 251, 275, 296, 349, 392, 422
CviKI_1	RGCY	8 cut(s)	118, 243, 251, 275, 296, 349, 392, 422
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	1 cut(s)	172
DpnII	GATC	1 cut(s)	170
EaeI	YGGCCR	2 cut(s)	390, 420
EcoRII	CCWGG	2 cut(s)	188, 409
FaeI	CATG	1 cut(s)	130
FaiI	YATR	7 cut(s)	122, 128, 158, 222, 258, 316, 344
FatI	CATG	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	2 cut(s)	251, 296
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	2 cut(s)	168, 252
GluI	GCNGC	1 cut(s)	276
HaeIII	GGCC	4 cut(s)	296, 349, 392, 422
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	26
Hpy166II	GTNNAC	4 cut(s)	6, 56, 178, 226
Hpy188III	TCNNGA	2 cut(s)	26, 365
Hpy8I	GTNNAC	4 cut(s)	6, 56, 178, 226
HpyAV	CCTTC	1 cut(s)	307
HpyCH4V	TGCA	1 cut(s)	407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 293, 302
HpyF3I	CTNAG	1 cut(s)	271
Hsp92II	CATG	1 cut(s)	130
Kpn2I	TCCGGA	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	170
LmnI	GCTCC	1 cut(s)	143
LweI	GCATC	2 cut(s)	27, 274
MaeI	CTAG	2 cut(s)	168, 252
MalI	GATC	1 cut(s)	172
MboI	GATC	1 cut(s)	170
MboII	GAAGA	4 cut(s)	34, 73, 199, 202
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	434
MlsI	TGGCCA	2 cut(s)	392, 422
MluCI	AATT	2 cut(s)	92, 259
MluNI	TGGCCA	2 cut(s)	392, 422
MnlI	CCTC	2 cut(s)	56, 278
Mox20I	TGGCCA	2 cut(s)	392, 422
MroI	TCCGGA	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	38
MscI	TGGCCA	2 cut(s)	392, 422
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	2 cut(s)	392, 422
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	190, 411
MvaI	CCWGG	2 cut(s)	190, 411
MwoI	GCNNNNNNNGC	3 cut(s)	284, 293, 302
NdeII	GATC	1 cut(s)	170
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	1 cut(s)	431
NspI	RCATGY	1 cut(s)	130
PaqCI	CACCTGC	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	188, 409
PspGI	CCWGG	2 cut(s)	188, 409
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	347
PsrI	GAACNNNNNNTAC	2 cut(s)	218, 250
PsuI	RGATCY	1 cut(s)	170
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	1 cut(s)	170
Sau96I	GGNCC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	190, 411
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	4 cut(s)	67, 120, 166, 191
SfaNI	GCATC	2 cut(s)	27, 274
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	92, 259
SsiI	CCGC	1 cut(s)	276
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	2 cut(s)	168, 252
StyD4I	CCNGG	2 cut(s)	188, 409
TasI	AATT	2 cut(s)	92, 259
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	386
TspRI	CASTG	1 cut(s)	386
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	2 cut(s)	168, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.