Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8419599.1

Orthogroup ID

OG0000850

Physical Location & Seq

Genomic Coordinates Forward (+)

60 .. 1401

Gene Structure 1342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8419599.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgtggagaaagacagctagttctgtgaaagctcaagttaatgacatccacacaaggctgatgaagaagaattatgaagcagtccctcaatggtggtttcacgtcatccttgtctcaatgattggtctttccatcttcacttgtgaaggttttggcaaacagctccaacttccatggtggggagttttaatggcttgtggcattgcattgttcttcaccttacccattggcattattaatgccacgacaaatacgggaactgggattaatgtgattacagagatggttatcgggtatatttatccaggcaagcctcttgcgaatgcggccttcaagacctatggcactatcagcatgtcacaagcactctcgtttcttactgacttcaaattgggtcactacatgaagatccctccaaaatccatgtttgttgtccagttagctggaacactaattgcttctagtgtccaatttgccacatcttggtggcttctccactccattgagaacatctgcgatgtctcaaagttgccggatggaagtccatggacatgtcccggcgatgatgtcttctacaatgcttcaatcatatggggagttgtcggcccgctcagaatgttcgccaacaaaggcatctacccggagttgaactggttcttcctcctcggtttacttgcgcctgttccagtctggtacttctccaagaaattcccaaatcaaaagtggattaagctcataaacatgcctatcattattggagcagctcagggtattccacctgctggacctgtccactacattacatatggagcagttgccatcttcttcaacttctatgtgtacagaaagttcaaaggctggtgggctaggcataactacatcctctcagctgctttggatgctggtgtggccttcgcaggagttctcttatatttcgcacttcaaagtaaggacattatagggccaaactggtggggccttgataatgatgatcattgcccattggcccgttgccctactgcaccaggagtagtggcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

346

Amino Acids

38.57

Weight (kDa)

9.18

Isoelectric Point (pI)

32.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26590 AT5G55930
fragaria_vesca	FvH4_3g42570 FvH4_3g42651 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660
malus_domestica	MD03G1029800.v1.1 MD03G1029900.v1.1 MD03G1030000.v1.1 MD07G1217200.v1.1 MD11G1034800.v1.1 MD11G1035000.v1.1 MD11G1035100.v1.1
prunus_persica	Prupe.6G026000_v2.0.a1 Prupe.6G026100_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026300_v2.0.a1
pyrus_communis	pycom03g02480 pycom03g02500 pycom11g02890 pycom11g02900
rosa_chinensis	RchiOBHm_Chr5g0076291 RchiOBHm_Chr5g0076301 RchiOBHm_Chr5g0076311 RchiOBHm_Chr5g0076621 RchiOBHm_Chr5g0076671
rosa_laevigata	RLG00000036614 RLG00000036615 RLG00000036616 RLG00000036617
rosa_multiflora	Rmu_co8320621.1_g000001 Rmu_co8419599.1_g000001 Rmu_co8455339.1_g000001 Rmu_sc0005961.1_g000002 Rmu_sc0005961.1_g000003 Rmu_sc0013948.1_g000002 Rmu_sc0035770.1_g000001 Rmu_sc0040547.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005490 Rroxscaffold_1G00005550 Rroxscaffold_1G00005560 Rroxscaffold_1G00005570
rosa_rugosa	Rorug05G0446700.1 Rorug05G0447000 Rorug05G0447100 Rorug05G0447200 Rorug05G0447200 Rorug05G0447300
rosa_samantha	Rh5AG501900 Rh5AG502000 Rh5AG502100 Rh5BG523700 Rh5BG523800 Rh5BG523900 Rh5CG547400 Rh5CG547500 Rh5CG547600 Rh5DG535900 Rh5DG536000 Rh5DG536100 Rh7AG436800
rosa_wichuraiana	Rw0G015040 Rw0G015060 Rw5G046590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	787
Acc36I	ACCTGC	1 cut(s)	787
AccB7I	CCANNNNNTGG	2 cut(s)	483, 782
AccBSI	CCGCTC	1 cut(s)	610
AciI	CCGC	2 cut(s)	326, 608
AclWI	GGATC	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	707
AfaI	GTAC	2 cut(s)	695, 842
AfiI	CCNNNNNNNGG	3 cut(s)	179, 483, 782
AflIII	ACRYGT	1 cut(s)	551
AgsI	TTSAA	7 cut(s)	334, 388, 585, 649, 829, 853, 944
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	2 cut(s)	304, 1024
AluBI	AGCT	7 cut(s)	17, 32, 163, 443, 733, 764, 890
AluI	AGCT	7 cut(s)	17, 32, 163, 443, 733, 764, 890
Alw26I	GTCTC	2 cut(s)	118, 526
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	6 cut(s)	327, 604, 909, 962, 976, 1005
ApeKI	GCWGC	2 cut(s)	761, 890
ApoI	RAATTY	1 cut(s)	707
AseI	ATTAAT	2 cut(s)	237, 267
Asp700I	GAANNNNTTC	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	679
AspS9I	GGNCC	5 cut(s)	605, 785, 962, 976, 1006
AsuC2I	CCSGG	2 cut(s)	558, 641
AsuHPI	GGTGA	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	785
BbsI	GAAGAC	1 cut(s)	562
BbvI	GCAGC	2 cut(s)	773, 877
BccI	CCATC	4 cut(s)	140, 277, 530, 827
BciT130I	CCWGG	2 cut(s)	306, 1026
BclI	TGATCA	1 cut(s)	991
BcnI	CCSGG	2 cut(s)	558, 641
BcoDI	GTCTC	2 cut(s)	118, 526
BfaI	CTAG	3 cut(s)	18, 462, 867
BfuAI	ACCTGC	1 cut(s)	787
BisI	GCNGC	3 cut(s)	327, 762, 891
BlsI	GCNGC	3 cut(s)	328, 763, 892
Bme1390I	CCNGG	4 cut(s)	306, 558, 641, 1026
Bme18I	GGWCC	1 cut(s)	785
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	5 cut(s)	605, 785, 962, 976, 1006
BmiI	GGNNCC	1 cut(s)	977
BmrFI	CCNGG	4 cut(s)	306, 558, 641, 1026
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	642, 889
BmuI	ACTGGG	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	562
Bpu10I	CCTNAGC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	18
BpuMI	CCSGG	2 cut(s)	558, 641
BsaBI	GATNNNNATC	1 cut(s)	287
BsaJI	CCNNGG	3 cut(s)	173, 545, 664
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 483, 782
Bse1I	ACTGG	5 cut(s)	265, 436, 656, 686, 974
Bse3DI	GCAATG	2 cut(s)	201, 994
Bse8I	GATNNNNATC	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	306, 1026
BseDI	CCNNGG	3 cut(s)	173, 545, 664
BseGI	GGATG	5 cut(s)	45, 105, 541, 879, 904
BseJI	GATNNNNATC	1 cut(s)	287
BseLI	CCNNNNNNNGG	3 cut(s)	179, 483, 782
BseMI	GCAATG	2 cut(s)	201, 994
BseMII	CTCAG	3 cut(s)	625, 779, 900
BseNI	ACTGG	5 cut(s)	265, 436, 656, 686, 974
BseRI	GAGGAG	1 cut(s)	653
BseXI	GCAGC	2 cut(s)	773, 877
BsgI	GTGCAG	1 cut(s)	1005
BshFI	GGCC	7 cut(s)	329, 606, 911, 964, 978, 1007, 1037
BsiSI	CCGG	3 cut(s)	533, 558, 641
BslFI	GGGAC	2 cut(s)	68, 540
BslI	CCNNNNNNNGG	3 cut(s)	179, 483, 782
BsmAI	GTCTC	2 cut(s)	118, 526
BsmFI	GGGAC	2 cut(s)	68, 540
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	7 cut(s)	329, 606, 911, 964, 978, 1007, 1037
Bsp1407I	TGTACA	1 cut(s)	840
Bsp143I	GATC	2 cut(s)	408, 991
Bsp19I	CCATGG	2 cut(s)	173, 545
BspACI	CCGC	2 cut(s)	326, 608
BspANI	GGCC	7 cut(s)	329, 606, 911, 964, 978, 1007, 1037
BspCNI	CTCAG	3 cut(s)	624, 778, 899
BspLI	GGNNCC	1 cut(s)	977
BspMI	ACCTGC	1 cut(s)	787
BspPI	GGATC	1 cut(s)	403
BsrBI	CCGCTC	1 cut(s)	610
BsrDI	GCAATG	2 cut(s)	201, 994
BsrGI	TGTACA	1 cut(s)	840
BsrI	ACTGG	5 cut(s)	265, 436, 656, 686, 974
BssECI	CCNNGG	3 cut(s)	173, 545, 664
BssMI	GATC	2 cut(s)	408, 991
BssT1I	CCWWGG	2 cut(s)	173, 545
Bst2UI	CCWGG	2 cut(s)	306, 1026
BstAUI	TGTACA	1 cut(s)	840
BstC8I	GCNNGC	2 cut(s)	311, 608
BstDEI	CTNAG	3 cut(s)	611, 765, 886
BstDSI	CCRYGG	2 cut(s)	173, 545
BstF5I	GGATG	5 cut(s)	45, 105, 541, 879, 904
BstHHI	GCGC	1 cut(s)	679
BstKTI	GATC	2 cut(s)	411, 994
BstMAI	GTCTC	2 cut(s)	118, 526
BstMBI	GATC	2 cut(s)	408, 991
BstMWI	GCNNNNNNNGC	4 cut(s)	326, 351, 899, 908
BstNI	CCWGG	2 cut(s)	306, 1026
BstNSI	RCATGY	3 cut(s)	358, 555, 745
BstSCI	CCNGG	4 cut(s)	304, 556, 639, 1024
BstV1I	GCAGC	2 cut(s)	773, 877
BstV2I	GAAGAC	1 cut(s)	562
BstX2I	RGATCY	1 cut(s)	408
BstXI	CCANNNNNNTGG	2 cut(s)	443, 972
BstYI	RGATCY	1 cut(s)	408
BsuRI	GGCC	7 cut(s)	329, 606, 911, 964, 978, 1007, 1037
BtgI	CCRYGG	2 cut(s)	173, 545
BtgZI	GCGATG	2 cut(s)	531, 576
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	5 cut(s)	45, 105, 541, 879, 904
BveI	ACCTGC	1 cut(s)	787
Cac8I	GCNNGC	2 cut(s)	311, 608
CfoI	GCGC	1 cut(s)	679
Cfr13I	GGNCC	5 cut(s)	605, 785, 962, 976, 1006
Csp6I	GTAC	2 cut(s)	694, 841
CviAII	CATG	7 cut(s)	174, 355, 403, 424, 546, 552, 742
CviQI	GTAC	2 cut(s)	694, 841
DdeI	CTNAG	3 cut(s)	611, 765, 886
DpnI	GATC	2 cut(s)	410, 993
DpnII	GATC	2 cut(s)	408, 991
Eco130I	CCWWGG	2 cut(s)	173, 545
Eco47I	GGWCC	1 cut(s)	785
EcoO109I	RGGNCCY	1 cut(s)	976
EcoRII	CCWGG	2 cut(s)	304, 1024
EcoT14I	CCWWGG	2 cut(s)	173, 545
ErhI	CCWWGG	2 cut(s)	173, 545
FaeI	CATG	7 cut(s)	177, 358, 406, 427, 549, 555, 745
FaqI	GGGAC	2 cut(s)	68, 540
FatI	CATG	7 cut(s)	173, 354, 402, 423, 545, 551, 741
FauI	CCCGC	1 cut(s)	615
FauNDI	CATATG	2 cut(s)	590, 805
FbaI	TGATCA	1 cut(s)	991
Fnu4HI	GCNGC	3 cut(s)	327, 762, 891
FokI	GGATG	5 cut(s)	32, 92, 548, 866, 911
Fsp4HI	GCNGC	3 cut(s)	327, 762, 891
FspBI	CTAG	3 cut(s)	18, 462, 867
GlaI	GCGC	1 cut(s)	678
GluI	GCNGC	3 cut(s)	327, 762, 891
HaeIII	GGCC	7 cut(s)	329, 606, 911, 964, 978, 1007, 1037
HapII	CCGG	3 cut(s)	533, 558, 641
HhaI	GCGC	1 cut(s)	679
Hin1II	CATG	7 cut(s)	177, 358, 406, 427, 549, 555, 745
Hin6I	GCGC	1 cut(s)	677
HinP1I	GCGC	1 cut(s)	677
HpaII	CCGG	3 cut(s)	533, 558, 641
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	3 cut(s)	671, 793, 841
Hpy188I	TCNGA	1 cut(s)	614
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	3 cut(s)	671, 793, 841
HpyAV	CCTTC	3 cut(s)	140, 340, 922
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	206, 1022
HpyF10VI	GCNNNNNNNGC	4 cut(s)	326, 351, 899, 908
HpyF3I	CTNAG	3 cut(s)	611, 765, 886
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	7 cut(s)	177, 358, 406, 427, 549, 555, 745
HspAI	GCGC	1 cut(s)	677
Ksp22I	TGATCA	1 cut(s)	991
Kzo9I	GATC	2 cut(s)	408, 991
LmnI	GCTCC	3 cut(s)	168, 758, 809
Lsp1109I	GCAGC	2 cut(s)	773, 877
LweI	GCATC	2 cut(s)	642, 889
MaeI	CTAG	3 cut(s)	18, 462, 867
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	357, 395
MalI	GATC	2 cut(s)	410, 993
MbiI	CCGCTC	1 cut(s)	610
MboI	GATC	2 cut(s)	408, 991
MboII	GAAGA	9 cut(s)	76, 79, 127, 205, 418, 562, 649, 814, 817
MflI	RGATCY	1 cut(s)	408
MluCI	AATT	5 cut(s)	70, 389, 453, 470, 707
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	6 cut(s)	96, 324, 423, 671, 674, 893
MroXI	GAANNNNTTC	1 cut(s)	653
MseI	TTAA	5 cut(s)	39, 188, 237, 267, 729
MslI	CAYNNNNRTG	3 cut(s)	484, 550, 740
MspA1I	CMGCKG	1 cut(s)	890
MspI	CCGG	3 cut(s)	533, 558, 641
MspR9I	CCNGG	4 cut(s)	306, 558, 641, 1026
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	2 cut(s)	306, 1026
MwoI	GCNNNNNNNGC	4 cut(s)	326, 351, 899, 908
NciI	CCSGG	2 cut(s)	558, 641
NcoI	CCATGG	2 cut(s)	173, 545
NdeI	CATATG	2 cut(s)	590, 805
NdeII	GATC	2 cut(s)	408, 991
NlaIII	CATG	7 cut(s)	177, 358, 406, 427, 549, 555, 745
NlaIV	GGNNCC	1 cut(s)	977
NmuCI	GTSAC	2 cut(s)	357, 395
NspI	RCATGY	3 cut(s)	358, 555, 745
PaqCI	CACCTGC	1 cut(s)	787
PciI	ACATGT	1 cut(s)	551
PctI	GAATGC	1 cut(s)	328
PdmI	GAANNNNTTC	1 cut(s)	653
PflMI	CCANNNNNTGG	2 cut(s)	483, 782
PkrI	GCNGC	3 cut(s)	328, 763, 892
PscI	ACATGT	1 cut(s)	551
PshBI	ATTAAT	2 cut(s)	237, 267
Psp6I	CCWGG	2 cut(s)	304, 1024
PspGI	CCWGG	2 cut(s)	304, 1024
PspN4I	GGNNCC	1 cut(s)	977
PspPI	GGNCC	5 cut(s)	605, 785, 962, 976, 1006
PsrI	GAACNNNNNNTAC	2 cut(s)	833, 865
PsuI	RGATCY	1 cut(s)	408
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	2 cut(s)	695, 842
RsaNI	GTAC	2 cut(s)	694, 841
RseI	CAYNNNNRTG	3 cut(s)	484, 550, 740
SaqAI	TTAA	5 cut(s)	39, 188, 237, 267, 729
SatI	GCNGC	3 cut(s)	327, 762, 891
Sau3AI	GATC	2 cut(s)	408, 991
Sau96I	GGNCC	5 cut(s)	605, 785, 962, 976, 1006
ScrFI	CCNGG	4 cut(s)	306, 558, 641, 1026
SfaNI	GCATC	2 cut(s)	642, 889
SinI	GGWCC	1 cut(s)	785
SmiMI	CAYNNNNRTG	3 cut(s)	484, 550, 740
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
Sse9I	AATT	5 cut(s)	70, 389, 453, 470, 707
SsiI	CCGC	2 cut(s)	326, 608
SspMI	CTAG	3 cut(s)	18, 462, 867
StyD4I	CCNGG	4 cut(s)	304, 556, 639, 1024
StyI	CCWWGG	2 cut(s)	173, 545
TaiI	ACGT	1 cut(s)	105
TasI	AATT	5 cut(s)	70, 389, 453, 470, 707
TatI	WGTACW	1 cut(s)	840
TauI	GCSGC	1 cut(s)	329
Tru1I	TTAA	5 cut(s)	39, 188, 237, 267, 729
Tru9I	TTAA	5 cut(s)	39, 188, 237, 267, 729
TseFI	GTSAC	2 cut(s)	357, 395
TseI	GCWGC	2 cut(s)	761, 890
Tsp45I	GTSAC	2 cut(s)	357, 395
TspDTI	ATGAA	3 cut(s)	77, 90, 419
Van91I	CCANNNNNTGG	2 cut(s)	483, 782
VpaK11BI	GGWCC	1 cut(s)	785
VspI	ATTAAT	2 cut(s)	237, 267
XapI	RAATTY	1 cut(s)	707
XceI	RCATGY	3 cut(s)	358, 555, 745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	720
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	3 cut(s)	18, 462, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.