Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000850

Physical Location & Seq

Genomic Coordinates Forward (+)

3097643 .. 3098150

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1035100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCAATTCTTCCTCATTGTTTTCATAAGCAGCTTTGCTTACTACTACATTGTCCCAAGCTTCTTCTTCCCTTCCCTAACAGCACTCTCCTTCGTCTGTTGGATTTGGAAGGACTCCATCACCGCGCAACAGATTGGTTCCGGCCTCAGGGGCCTCAGAATTGGCTCAAAGTACAAGAAGTGCTGGGCAAGGCATAACTACATCCTATCAGCTGCTTTGGATGCCGGTATGGCCTTTACAGCAGTTATCCTATATGTCACCCACCAATCCAGGGATATTATGGGTCCAAAGTGGTGCGGTCTGGAACAAGACGACCATTGTCCGTCAGCCAAGTGTCCGACCGCACCAGGGATAGAGACTAAAGGGTGTCCAGTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

127

Amino Acids

14.11

Weight (kDa)

8.78

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	1 - 51	9.3e-06	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26590 AT5G55930
fragaria_vesca	FvH4_3g42570 FvH4_3g42651 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660
malus_domestica	MD03G1029800.v1.1 MD03G1029900.v1.1 MD03G1030000.v1.1 MD07G1217200.v1.1 MD11G1034800.v1.1 MD11G1035000.v1.1 MD11G1035100.v1.1
prunus_persica	Prupe.6G026000_v2.0.a1 Prupe.6G026100_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026300_v2.0.a1
pyrus_communis	pycom03g02480 pycom03g02500 pycom11g02890 pycom11g02900
rosa_chinensis	RchiOBHm_Chr5g0076291 RchiOBHm_Chr5g0076301 RchiOBHm_Chr5g0076311 RchiOBHm_Chr5g0076621 RchiOBHm_Chr5g0076671
rosa_laevigata	RLG00000036614 RLG00000036615 RLG00000036616 RLG00000036617
rosa_multiflora	Rmu_co8320621.1_g000001 Rmu_co8419599.1_g000001 Rmu_co8455339.1_g000001 Rmu_sc0005961.1_g000002 Rmu_sc0005961.1_g000003 Rmu_sc0013948.1_g000002 Rmu_sc0035770.1_g000001 Rmu_sc0040547.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005490 Rroxscaffold_1G00005550 Rroxscaffold_1G00005560 Rroxscaffold_1G00005570
rosa_rugosa	Rorug05G0446700.1 Rorug05G0447000 Rorug05G0447100 Rorug05G0447200 Rorug05G0447200 Rorug05G0447300
rosa_samantha	Rh5AG501900 Rh5AG502000 Rh5AG502100 Rh5BG523700 Rh5BG523800 Rh5BG523900 Rh5CG547400 Rh5CG547500 Rh5CG547600 Rh5DG535900 Rh5DG536000 Rh5DG536100 Rh7AG436800
rosa_wichuraiana	Rw0G015040 Rw0G015060 Rw5G046590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	125
AciI	CCGC	3 cut(s)	123, 297, 342
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	147, 271, 348
AjnI	CCWGG	2 cut(s)	269, 346
AluBI	AGCT	3 cut(s)	33, 60, 212
AluI	AGCT	3 cut(s)	33, 60, 212
Alw26I	GTCTC	1 cut(s)	350
AoxI	GGCC	3 cut(s)	142, 151, 231
ApeKI	GCWGC	2 cut(s)	30, 212
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	2 cut(s)	151, 284
AsuHPI	GGTGA	2 cut(s)	112, 250
AvaII	GGWCC	1 cut(s)	284
AxyI	CCTNAGG	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	42, 199
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	2 cut(s)	271, 348
BcoDI	GTCTC	1 cut(s)	350
BglI	GCCNNNNNGGC	2 cut(s)	150, 230
BisI	GCNGC	2 cut(s)	31, 213
BlsI	GCNGC	2 cut(s)	32, 214
Bme1390I	CCNGG	2 cut(s)	271, 348
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	151, 284
BmiI	GGNNCC	3 cut(s)	139, 152, 285
BmrFI	CCNGG	2 cut(s)	271, 348
BmsI	GCATC	1 cut(s)	211
BoxI	GACNNNNGTC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	270, 347
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 271, 348
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	371
Bse21I	CCTNAGG	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	271, 348
BseDI	CCNNGG	2 cut(s)	270, 347
BseGI	GGATG	2 cut(s)	201, 226
BseLI	CCNNNNNNNGG	3 cut(s)	147, 271, 348
BseMII	CTCAG	2 cut(s)	160, 169
BseNI	ACTGG	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	42, 199
BseYI	CCCAGC	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	3 cut(s)	144, 153, 233
BsiEI	CGRYCG	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	141, 225
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	147, 271, 348
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	3 cut(s)	144, 153, 233
BspACI	CCGC	3 cut(s)	123, 297, 342
BspANI	GGCC	3 cut(s)	144, 153, 233
BspCNI	CTCAG	2 cut(s)	159, 168
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	3 cut(s)	139, 152, 285
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	270, 347
Bst2UI	CCWGG	2 cut(s)	271, 348
BstDEI	CTNAG	2 cut(s)	146, 155
BstF5I	GGATG	2 cut(s)	201, 226
BstFNI	CGCG	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	350
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	4 cut(s)	150, 221, 230, 239
BstNI	CCWGG	2 cut(s)	271, 348
BstPAI	GACNNNNGTC	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	269, 346
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	42, 199
Bsu36I	CCTNAGG	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	144, 153, 233
BtsCI	GGATG	2 cut(s)	201, 226
CfoI	GCGC	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	151, 284
Csp6I	GTAC	1 cut(s)	172
CviJI	RGCY	8 cut(s)	33, 60, 144, 153, 165, 212, 233, 329
CviKI_1	RGCY	8 cut(s)	33, 60, 144, 153, 165, 212, 233, 329
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	146, 155
Eco47I	GGWCC	1 cut(s)	284
Eco81I	CCTNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	2 cut(s)	269, 346
FaiI	YATR	6 cut(s)	26, 195, 230, 253, 255, 281
FaqI	GGGAC	1 cut(s)	38
Fnu4HI	GCNGC	2 cut(s)	31, 213
FokI	GGATG	2 cut(s)	188, 233
Fsp4HI	GCNGC	2 cut(s)	31, 213
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	2 cut(s)	31, 213
GsaI	CCCAGC	1 cut(s)	187
HaeIII	GGCC	3 cut(s)	144, 153, 233
HapII	CCGG	2 cut(s)	141, 225
HhaI	GCGC	1 cut(s)	127
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	2 cut(s)	141, 225
HphI	GGTGA	2 cut(s)	112, 250
Hpy188I	TCNGA	2 cut(s)	158, 339
Hpy188III	TCNNGA	1 cut(s)	302
HpyAV	CCTTC	3 cut(s)	81, 100, 103
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	150, 221, 230, 239
HpyF3I	CTNAG	2 cut(s)	146, 155
HspAI	GCGC	1 cut(s)	125
LpnPI	CCDG	9 cut(s)	133, 154, 169, 238, 256, 283, 287, 333, 360
Lsp1109I	GCAGC	2 cut(s)	42, 199
LweI	GCATC	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	256
MboII	GAAGA	2 cut(s)	55, 58
MluCI	AATT	2 cut(s)	5, 159
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	80, 362
MnlI	CCTC	3 cut(s)	23, 155, 164
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	2 cut(s)	141, 225
MspR9I	CCNGG	2 cut(s)	271, 348
MvaI	CCWGG	2 cut(s)	271, 348
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	4 cut(s)	150, 221, 230, 239
NlaIV	GGNNCC	3 cut(s)	139, 152, 285
NmuCI	GTSAC	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	32, 214
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PshAI	GACNNNNGTC	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	269, 346
PspFI	CCCAGC	1 cut(s)	183
PspGI	CCWGG	2 cut(s)	269, 346
PspN4I	GGNNCC	3 cut(s)	139, 152, 285
PspPI	GGNCC	2 cut(s)	151, 284
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SatI	GCNGC	2 cut(s)	31, 213
Sau96I	GGNCC	2 cut(s)	151, 284
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	271, 348
SetI	ASST	3 cut(s)	35, 62, 214
SfaNI	GCATC	1 cut(s)	211
SfiI	GGCCNNNNNGGCC	1 cut(s)	150
SinI	GGWCC	1 cut(s)	284
Sse9I	AATT	2 cut(s)	5, 159
SsiI	CCGC	3 cut(s)	123, 297, 342
StyD4I	CCNGG	2 cut(s)	269, 346
TasI	AATT	2 cut(s)	5, 159
TatI	WGTACW	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	30, 212
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	13
TspGWI	ACGGA	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.