Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000850

Physical Location & Seq

Genomic Coordinates Reverse (-)

82649822 .. 82654835

Gene Structure 5014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG523700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2280 bp

ATGGATCCAGCGGAGAATACAAGATTGACAACTGACCGAGCCAAATTGACCAAAATATTCAGCAATAATGAGACAGAAGACCACAATACAAAACTATTAGATGATGAGTTCAACGACAGCCCAATTGAGCAGGTGAGGCTAACAGTTCCGATCACCGACGACCCTTCAGTTCCCGCCTTAACCTTTCGTACGTGGGTTCTAGGCCTTTTGTCATGCTGCACTCTTGCCTTTTTGAACCAGTTCTTTGGTTACCGCCAAAACCAGCTCTACATTTCTTCAGTCTCAGCACAAATCCTCGTCCTCCCTCTCGGAAAACTTATGGCTAAAACTCTCCCAACAAAACAATTCCGAGTTATGGGACGGACATTTTCGTTCAACCCCGGACCTTTCAACTTGAAAGAGCATGTGTTGATCACCATCTTTGCGAATTCAGGATCAAATAGTGTTTATGCAGTTAACATTATCACTATTGTGAAGGCTTTCTACCGCAGAAGCATGCATCCTATGGCAGCCTTCTTGTTAGCCCAAAGCACTCAATTGCTTGGATATGGGTGGGCTGGGTTGTTCAGAAAGTACCTTGTTGACTCCCCATATATGTGGTGGCCTGACAATCTGGTTCAGGTCTCTCTTTTCAGGGCGCTTCATGAATGGGAAATCAGACCAAAGGGAGGCCGTACTAGGCTGCAGTACTTCAGCTTAGTATTTGCATGCAGCTTCGCTTATTATATTATTCCAAGTTTTTTCTTCCCCTCCATAGGCGCTCTCTCCTTTGTTTGTTGGATATGGAAGGACTCCGTCACCGCCCAACAGATTGGTTCCGGCCTCAATGGCCTTGGCATTGGCTCGTTTGGCCTTGATTGGTCAACTGTTGCTAGCTTCTTGAAGAGCCCATTAGCCACACCCGGTTTTGTCTTCATGAACATGTTGGCTGGTTTTGTCTTCATTTTCTACATTCTTACCCCCATTTTTTATTGGTCCAATGTAAAAGATGCCAAGAAGTTTCCCTTCTTTTCTTCTTCTACTTTCGACTCCACTGGCAAACGCTATAATGTTTCCCGAGTTCTGGACCAGAAAACTTTCGATATTAATTTGAAAGAGTATAACAGTTACAGTAAACTCCATCTCTCTATGTACTTTGCCTCGAGTTATGGGTGGAGCTTTGCTGGTCTGACAGCAACTATTTCACATGTTGCACTCTTCCATGGAAAAGACATCTGGGATATGTGGAAAAAGACTTCTACCGCAGCGAAAGATCAGCTTGGGGACATCCACACACGGTTGATGAAGAAGAACTACGAGGCAGTCCCACAGTGGTGGTTTCACATCATGCTTGTTTTAATGGTTGGCCTTTCCATCTGGGTCTGTGAAGGTTTTGGGAAACAGCTCCAACTTCCATGGTGGGGAGTCTTACTGGCTTGTGCCATTGCACTAACTTTCACCTTACCCATTGGCATTATTCAAGCCACAACAAACATGCAACCGGGGCTCAATGTGATCACAGAGTTGGTTATTGGGTATCTTTATCCTGGGAAGCCTCTTGCCAATGTGACTTTCAAAACATATGGCTATATCAGCATGTCACAAGCACTCATGTTTCTCGGTGACTTCAAATTAGGTCACTATATGAAGATCCCTCCCAAGTCCATGTTTATTGCGCAGTTAGCTGGAACACTGGTCGCTTCTAGTACCTTTTTCAGCACATCCTGGTGGCTTCTCAACACTGTTGAGAACATCTGTGATCCATCAAAACTGCCAGAGGGAAGTCCATGGACATGTCCTGGTGATGAGGTCTTCTATAATGCCTCAATCATTTGGGGAGTTATAGGCCCTCTCAGAATGTTCACTAAGCATGGAAACTACCCGGAGATGAACTGGTTCTTCCTACTTGGTTTACTTGCACCTATACCAGTTTGGCTCCTATCGCGCAAATTCCCCAAGCTAGAGTGGATTAAGCTCATAAACATGCCTATCATCATTGGAACCACAGCAGTCATGCCACCAGCTAAAGCTGTCCACTACTTGATGTGGTTCACAGTCGGAATTTTCTTTAGCTTCTATGTTTATCGACAACACAGGGCATGGTGGGCTAGGCATAACTATATCCTATCAGCTGCTTTGGATGCCGGCGTGGCCTTCACGGCAGTTCTTGTGTATTTCACCCTTCAGAGTAACGGTATTAATGGTCCAAAATGGTGGGGTCAGGACAGCACTGATCATTGTCCGTTGGCCAAGTGCCCCACAGCTCCAGGAGTAGTGGTCAAAGGGTGTCCAGTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

759

Amino Acids

85.96

Weight (kDa)

9.26

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	60 - 719	1.2e-162	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26590 AT5G55930
fragaria_vesca	FvH4_3g42570 FvH4_3g42651 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660
malus_domestica	MD03G1029800.v1.1 MD03G1029900.v1.1 MD03G1030000.v1.1 MD07G1217200.v1.1 MD11G1034800.v1.1 MD11G1035000.v1.1 MD11G1035100.v1.1
prunus_persica	Prupe.6G026000_v2.0.a1 Prupe.6G026100_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026300_v2.0.a1
pyrus_communis	pycom03g02480 pycom03g02500 pycom11g02890 pycom11g02900
rosa_chinensis	RchiOBHm_Chr5g0076291 RchiOBHm_Chr5g0076301 RchiOBHm_Chr5g0076311 RchiOBHm_Chr5g0076621 RchiOBHm_Chr5g0076671
rosa_laevigata	RLG00000036614 RLG00000036615 RLG00000036616 RLG00000036617
rosa_multiflora	Rmu_co8320621.1_g000001 Rmu_co8419599.1_g000001 Rmu_co8455339.1_g000001 Rmu_sc0005961.1_g000002 Rmu_sc0005961.1_g000003 Rmu_sc0013948.1_g000002 Rmu_sc0035770.1_g000001 Rmu_sc0040547.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005490 Rroxscaffold_1G00005550 Rroxscaffold_1G00005560 Rroxscaffold_1G00005570
rosa_rugosa	Rorug05G0446700.1 Rorug05G0447000 Rorug05G0447100 Rorug05G0447200 Rorug05G0447200 Rorug05G0447300
rosa_samantha	Rh5AG501900 Rh5AG502000 Rh5AG502100 Rh5BG523700 Rh5BG523800 Rh5BG523900 Rh5CG547400 Rh5CG547500 Rh5CG547600 Rh5DG535900 Rh5DG536000 Rh5DG536100 Rh7AG436800
rosa_wichuraiana	Rw0G015040 Rw0G015060 Rw5G046590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	121
Acc16I	TGCGCA	1 cut(s)	1656
Acc36I	ACCTGC	1 cut(s)	121
AccII	CGCG	1 cut(s)	1924
AciI	CCGC	6 cut(s)	11, 174, 253, 487, 801, 1242
AclWI	GGATC	4 cut(s)	12, 442, 1624, 1733
AcoI	YGGCCR	1 cut(s)	2226
AcsI	RAATTY	3 cut(s)	427, 1928, 2040
AcuI	CTGAAG	4 cut(s)	150, 261, 676, 2147
AfaI	GTAC	6 cut(s)	190, 575, 676, 689, 1133, 1687
AfiI	CCNNNNNNNGG	5 cut(s)	355, 668, 755, 1063, 1400
AflIII	ACRYGT	3 cut(s)	921, 1186, 1772
AjnI	CCWGG	4 cut(s)	1525, 1703, 1777, 2245
AjuI	GAANNNNNNNTTGG	2 cut(s)	1535, 1567
AleI	CACNNNNGTG	2 cut(s)	470, 1312
Alw26I	GTCTC	3 cut(s)	65, 286, 628
AlwI	GGATC	4 cut(s)	12, 442, 1624, 1733
Ama87I	CYCGRG	2 cut(s)	1056, 1141
ApeKI	GCWGC	6 cut(s)	216, 509, 682, 711, 1244, 2111
ApoI	RAATTY	3 cut(s)	427, 1928, 2040
AseI	ATTAAT	2 cut(s)	1086, 2178
Asp700I	GAANNNNTTC	4 cut(s)	239, 479, 1076, 1874
AspLEI	GCGC	4 cut(s)	640, 761, 1657, 1926
AspS9I	GGNCC	5 cut(s)	383, 975, 1066, 1826, 2183
AsuC2I	CCSGG	4 cut(s)	381, 903, 1482, 1862
AsuHPI	GGTGA	8 cut(s)	145, 145, 406, 790, 1429, 1613, 1793, 2149
AsuNHI	GCTAGC	1 cut(s)	872
AvaI	CYCGRG	2 cut(s)	1056, 1141
AvaII	GGWCC	4 cut(s)	383, 975, 1066, 2183
BaeGI	GKGCMC	1 cut(s)	2237
BalI	TGGCCA	1 cut(s)	2228
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	890, 1488
BarI	GAAGNNNNNNTAC	4 cut(s)	467, 499, 1277, 1309
BbsI	GAAGAC	4 cut(s)	84, 904, 931, 1783
BbvI	GCAGC	6 cut(s)	203, 521, 669, 723, 1256, 2098
BccI	CCATC	4 cut(s)	425, 1128, 1361, 1750
BceAI	ACGGC	2 cut(s)	657, 2154
BciT130I	CCWGG	4 cut(s)	1527, 1705, 1779, 2247
BclI	TGATCA	3 cut(s)	411, 1494, 2212
BcnI	CCSGG	4 cut(s)	381, 903, 1482, 1862
BcoDI	GTCTC	3 cut(s)	65, 286, 628
BfaI	CTAG	6 cut(s)	200, 678, 873, 1683, 1940, 2088
BfmI	CTRYAG	1 cut(s)	683
BfoI	RGCGCY	2 cut(s)	641, 762
BfuAI	ACCTGC	1 cut(s)	121
BglI	GCCNNNNNGGC	3 cut(s)	828, 2129, 2138
BisI	GCNGC	6 cut(s)	217, 510, 683, 712, 1245, 2112
BlsI	GCNGC	6 cut(s)	218, 511, 684, 713, 1246, 2113
BmcAI	AGTACT	1 cut(s)	689
Bme1390I	CCNGG	8 cut(s)	381, 903, 1482, 1527, 1705, 1779, 1862, 2247
Bme18I	GGWCC	4 cut(s)	383, 975, 1066, 2183
BmeT110I	CYCGRG	2 cut(s)	1056, 1141
BmgT120I	GGNCC	5 cut(s)	383, 975, 1066, 1826, 2183
BmiI	GGNNCC	4 cut(s)	6, 817, 1916, 1981
BmrFI	CCNGG	8 cut(s)	381, 903, 1482, 1527, 1705, 1779, 1862, 2247
BmsI	GCATC	3 cut(s)	508, 979, 2110
BmtI	GCTAGC	1 cut(s)	876
BpiI	GAAGAC	4 cut(s)	84, 904, 931, 1783
BpmI	CTGGAG	1 cut(s)	2229
BpuMI	CCSGG	4 cut(s)	381, 903, 1482, 1862
BsaAI	YACGTR	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	628
BsaJI	CCNNGG	7 cut(s)	379, 832, 1201, 1394, 1481, 1526, 1766
BsaXI	ACNNNNNCTCC	2 cut(s)	2241, 2271
Bsc4I	CCNNNNNNNGG	5 cut(s)	355, 668, 755, 1063, 1400
Bse118I	RCCGGY	1 cut(s)	2123
Bse1I	ACTGG	7 cut(s)	238, 1039, 1416, 1677, 1877, 1907, 2270
Bse3DI	GCAATG	1 cut(s)	1422
Bse8I	GATNNNNATC	1 cut(s)	416
BseBI	CCWGG	4 cut(s)	1527, 1705, 1779, 2247
BseDI	CCNNGG	7 cut(s)	379, 832, 1201, 1394, 1481, 1526, 1766
BseGI	GGATG	4 cut(s)	499, 1266, 1700, 2125
BseJI	GATNNNNATC	1 cut(s)	416
BseLI	CCNNNNNNNGG	5 cut(s)	355, 668, 755, 1063, 1400
BseMI	GCAATG	1 cut(s)	1422
BseMII	CTCAG	2 cut(s)	297, 1846
BseNI	ACTGG	7 cut(s)	238, 1039, 1416, 1677, 1877, 1907, 2270
BseSI	GKGCMC	1 cut(s)	2237
BseXI	GCAGC	6 cut(s)	203, 521, 669, 723, 1256, 2098
BseYI	CCCAGC	1 cut(s)	557
BsgI	GTGCAG	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	1924
BsiHKCI	CYCGRG	2 cut(s)	1056, 1141
BsiSI	CCGG	6 cut(s)	381, 819, 903, 1481, 1862, 2124
BsiWI	CGTACG	1 cut(s)	188
BslFI	GGGAC	3 cut(s)	372, 1277, 1289
BslI	CCNNNNNNNGG	5 cut(s)	355, 668, 755, 1063, 1400
BsmAI	GTCTC	3 cut(s)	65, 286, 628
BsmFI	GGGAC	3 cut(s)	372, 1277, 1289
Bso31I	GGTCTC	1 cut(s)	628
BsoBI	CYCGRG	2 cut(s)	1056, 1141
Bsp1286I	GDGCHC	3 cut(s)	890, 1488, 2237
Bsp143I	GATC	9 cut(s)	4, 150, 411, 434, 1252, 1494, 1629, 1738, 2212
Bsp19I	CCATGG	3 cut(s)	1201, 1394, 1766
BspACI	CCGC	6 cut(s)	11, 174, 253, 487, 801, 1242
BspCNI	CTCAG	2 cut(s)	296, 1845
BspFNI	CGCG	1 cut(s)	1924
BspHI	TCATGA	2 cut(s)	643, 915
BspLI	GGNNCC	4 cut(s)	6, 817, 1916, 1981
BspMAI	CTGCAG	1 cut(s)	687
BspMI	ACCTGC	1 cut(s)	121
BspOI	GCTAGC	1 cut(s)	876
BspPI	GGATC	4 cut(s)	12, 442, 1624, 1733
BspQI	GCTCTTC	1 cut(s)	878
BspTNI	GGTCTC	1 cut(s)	628
BsrDI	GCAATG	1 cut(s)	1422
BsrFI	RCCGGY	1 cut(s)	2123
BsrI	ACTGG	7 cut(s)	238, 1039, 1416, 1677, 1877, 1907, 2270
BssAI	RCCGGY	1 cut(s)	2123
BssECI	CCNNGG	7 cut(s)	379, 832, 1201, 1394, 1481, 1526, 1766
BssMI	GATC	9 cut(s)	4, 150, 411, 434, 1252, 1494, 1629, 1738, 2212
BssT1I	CCWWGG	4 cut(s)	832, 1201, 1394, 1766
Bst2UI	CCWGG	4 cut(s)	1527, 1705, 1779, 2247
Bst4CI	ACNGT	9 cut(s)	145, 868, 1106, 1112, 1278, 1311, 1723, 2035, 2174
Bst6I	CTCTTC	2 cut(s)	878, 1202
BstBAI	YACGTR	1 cut(s)	192
BstC8I	GCNNGC	4 cut(s)	497, 709, 874, 2125
BstDEI	CTNAG	4 cut(s)	283, 697, 1832, 1845
BstDSI	CCRYGG	3 cut(s)	1201, 1394, 1766
BstEII	GGTNACC	1 cut(s)	248
BstF5I	GGATG	4 cut(s)	499, 1266, 1700, 2125
BstFNI	CGCG	1 cut(s)	1924
BstH2I	RGCGCY	2 cut(s)	641, 762
BstHHI	GCGC	4 cut(s)	640, 761, 1657, 1926
BstKTI	GATC	9 cut(s)	7, 153, 414, 437, 1255, 1497, 1632, 1741, 2215
BstMAI	GTCTC	3 cut(s)	65, 286, 628
BstMBI	GATC	9 cut(s)	4, 150, 411, 434, 1252, 1494, 1629, 1738, 2212
BstNI	CCWGG	4 cut(s)	1527, 1705, 1779, 2247
BstNSI	RCATGY	9 cut(s)	407, 499, 711, 925, 1190, 1477, 1579, 1776, 1966
BstPI	GGTNACC	1 cut(s)	248
BstSCI	CCNGG	8 cut(s)	379, 901, 1480, 1525, 1703, 1777, 1860, 2245
BstSFI	CTRYAG	1 cut(s)	683
BstSLI	GKGCMC	1 cut(s)	2237
BstUI	CGCG	1 cut(s)	1924
BstV1I	GCAGC	6 cut(s)	203, 521, 669, 723, 1256, 2098
BstV2I	GAAGAC	4 cut(s)	84, 904, 931, 1783
BstX2I	RGATCY	2 cut(s)	4, 1629
BstXI	CCANNNNNNTGG	5 cut(s)	245, 597, 812, 1314, 2193
BstYI	RGATCY	2 cut(s)	4, 1629
BtgI	CCRYGG	3 cut(s)	1201, 1394, 1766
BtsCI	GGATG	4 cut(s)	499, 1266, 1700, 2125
BtsIMutI	CAGTG	5 cut(s)	1032, 1316, 1670, 1719, 2208
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	4 cut(s)	497, 709, 874, 2125
CciI	TCATGA	2 cut(s)	643, 915
CfoI	GCGC	4 cut(s)	640, 761, 1657, 1926
Cfr10I	RCCGGY	1 cut(s)	2123
Cfr13I	GGNCC	5 cut(s)	383, 975, 1066, 1826, 2183
Csp6I	GTAC	6 cut(s)	189, 574, 675, 688, 1132, 1686
CviQI	GTAC	6 cut(s)	189, 574, 675, 688, 1132, 1686
DdeI	CTNAG	4 cut(s)	283, 697, 1832, 1845
DpnI	GATC	9 cut(s)	6, 152, 413, 436, 1254, 1496, 1631, 1740, 2214
DpnII	GATC	9 cut(s)	4, 150, 411, 434, 1252, 1494, 1629, 1738, 2212
EaeI	YGGCCR	1 cut(s)	2226
Eam1104I	CTCTTC	2 cut(s)	878, 1202
EarI	CTCTTC	2 cut(s)	878, 1202
Eco130I	CCWWGG	4 cut(s)	832, 1201, 1394, 1766
Eco147I	AGGCCT	1 cut(s)	204
Eco24I	GRGCYC	2 cut(s)	890, 1488
Eco31I	GGTCTC	1 cut(s)	628
Eco47I	GGWCC	4 cut(s)	383, 975, 1066, 2183
Eco57I	CTGAAG	4 cut(s)	150, 261, 676, 2147
Eco88I	CYCGRG	2 cut(s)	1056, 1141
Eco91I	GGTNACC	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	1826
EcoO65I	GGTNACC	1 cut(s)	248
EcoRI	GAATTC	1 cut(s)	427
EcoRII	CCWGG	4 cut(s)	1525, 1703, 1777, 2245
EcoT14I	CCWWGG	4 cut(s)	832, 1201, 1394, 1766
EcoT22I	ATGCAT	1 cut(s)	501
EcoT38I	GRGCYC	2 cut(s)	890, 1488
ErhI	CCWWGG	4 cut(s)	832, 1201, 1394, 1766
FalI	AAGNNNNNCTT	4 cut(s)	989, 1021, 1242, 1274
FaqI	GGGAC	3 cut(s)	372, 1277, 1289
FauI	CCCGC	1 cut(s)	181
FauNDI	CATATG	1 cut(s)	1561
FbaI	TGATCA	3 cut(s)	411, 1494, 2212
Fnu4HI	GCNGC	6 cut(s)	217, 510, 683, 712, 1245, 2112
FokI	GGATG	4 cut(s)	486, 1253, 1687, 2132
FriOI	GRGCYC	2 cut(s)	890, 1488
Fsp4HI	GCNGC	6 cut(s)	217, 510, 683, 712, 1245, 2112
FspBI	CTAG	6 cut(s)	200, 678, 873, 1683, 1940, 2088
FspI	TGCGCA	1 cut(s)	1656
GlaI	GCGC	4 cut(s)	639, 760, 1656, 1925
GluI	GCNGC	6 cut(s)	217, 510, 683, 712, 1245, 2112
GsaI	CCCAGC	1 cut(s)	561
GsuI	CTGGAG	1 cut(s)	2229
HaeII	RGCGCY	2 cut(s)	641, 762
HapII	CCGG	6 cut(s)	381, 819, 903, 1481, 1862, 2124
HhaI	GCGC	4 cut(s)	640, 761, 1657, 1926
Hin6I	GCGC	4 cut(s)	638, 759, 1655, 1924
HinP1I	GCGC	4 cut(s)	638, 759, 1655, 1924
HincII	GTYRAC	3 cut(s)	457, 583, 864
HindII	GTYRAC	3 cut(s)	457, 583, 864
HinfI	GANTC	4 cut(s)	584, 791, 1028, 1404
HpaI	GTTAAC	1 cut(s)	457
HpaII	CCGG	6 cut(s)	381, 819, 903, 1481, 1862, 2124
HphI	GGTGA	8 cut(s)	145, 145, 406, 790, 1429, 1613, 1793, 2149
Hpy166II	GTNNAC	8 cut(s)	457, 583, 864, 1115, 1842, 1892, 2014, 2031
Hpy188I	TCNGA	9 cut(s)	150, 311, 350, 569, 659, 1170, 1835, 2039, 2166
Hpy188III	TCNNGA	7 cut(s)	432, 644, 880, 916, 1056, 1064, 2201
Hpy8I	GTNNAC	8 cut(s)	457, 583, 864, 1115, 1842, 1892, 2014, 2031
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	8 cut(s)	174, 469, 523, 781, 1015, 1361, 2143, 2171
HpyCH4III	ACNGT	9 cut(s)	145, 868, 1106, 1112, 1278, 1311, 1723, 2035, 2174
HpyCH4IV	ACGT	1 cut(s)	191
HpyF3I	CTNAG	4 cut(s)	283, 697, 1832, 1845
HpySE526I	ACGT	1 cut(s)	191
HspAI	GCGC	4 cut(s)	638, 759, 1655, 1924
KroI	GCCGGC	1 cut(s)	2123
KroNI	GCCGGC	1 cut(s)	2125
Ksp22I	TGATCA	3 cut(s)	411, 1494, 2212
KspAI	GTTAAC	1 cut(s)	457
Kzo9I	GATC	9 cut(s)	4, 150, 411, 434, 1252, 1494, 1629, 1738, 2212
LguI	GCTCTTC	1 cut(s)	878
LmnI	GCTCC	4 cut(s)	1155, 1389, 1920, 2248
Lsp1109I	GCAGC	6 cut(s)	203, 521, 669, 723, 1256, 2098
LweI	GCATC	3 cut(s)	508, 979, 2110
MaeI	CTAG	6 cut(s)	200, 678, 873, 1683, 1940, 2088
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	8 cut(s)	248, 796, 1106, 1546, 1578, 1601, 1616, 2168
MalI	GATC	9 cut(s)	6, 152, 413, 436, 1254, 1496, 1631, 1740, 2214
MboI	GATC	9 cut(s)	4, 150, 411, 434, 1252, 1494, 1629, 1738, 2212
MfeI	CAATTG	2 cut(s)	123, 536
MflI	RGATCY	2 cut(s)	4, 1629
MhlI	GDGCHC	3 cut(s)	890, 1488, 2237
MlsI	TGGCCA	1 cut(s)	2228
MluCI	AATT	9 cut(s)	44, 123, 344, 427, 536, 1087, 1610, 1928, 2040
MluNI	TGGCCA	1 cut(s)	2228
MlyI	GAGTC	4 cut(s)	578, 785, 1022, 1413
MmeI	TCCRAC	3 cut(s)	758, 1411, 2017
Mox20I	TGGCCA	1 cut(s)	2228
Mph1103I	ATGCAT	1 cut(s)	501
MroNI	GCCGGC	1 cut(s)	2123
MroXI	GAANNNNTTC	4 cut(s)	239, 479, 1076, 1874
MscI	TGGCCA	1 cut(s)	2228
MseI	TTAA	6 cut(s)	179, 456, 1086, 1337, 1950, 2178
MslI	CAYNNNNRTG	7 cut(s)	470, 595, 920, 1312, 1705, 1771, 1961
Msp20I	TGGCCA	1 cut(s)	2228
MspA1I	CMGCKG	2 cut(s)	11, 2111
MspI	CCGG	6 cut(s)	381, 819, 903, 1481, 1862, 2124
MspR9I	CCNGG	8 cut(s)	381, 903, 1482, 1527, 1705, 1779, 1862, 2247
MunI	CAATTG	2 cut(s)	123, 536
MvaI	CCWGG	4 cut(s)	1527, 1705, 1779, 2247
MvnI	CGCG	1 cut(s)	1924
NaeI	GCCGGC	1 cut(s)	2125
NciI	CCSGG	4 cut(s)	381, 903, 1482, 1862
NcoI	CCATGG	3 cut(s)	1201, 1394, 1766
NdeI	CATATG	1 cut(s)	1561
NdeII	GATC	9 cut(s)	4, 150, 411, 434, 1252, 1494, 1629, 1738, 2212
NgoMIV	GCCGGC	1 cut(s)	2123
NheI	GCTAGC	1 cut(s)	872
NlaIV	GGNNCC	4 cut(s)	6, 817, 1916, 1981
NmuCI	GTSAC	5 cut(s)	796, 1546, 1578, 1601, 1616
NsbI	TGCGCA	1 cut(s)	1656
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	9 cut(s)	407, 499, 711, 925, 1190, 1477, 1579, 1776, 1966
OliI	CACNNNNGTG	2 cut(s)	470, 1312
PaeI	GCATGC	2 cut(s)	499, 711
PaeR7I	CTCGAG	1 cut(s)	1141
PagI	TCATGA	2 cut(s)	643, 915
PaqCI	CACCTGC	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	204
PciI	ACATGT	3 cut(s)	921, 1186, 1772
PciSI	GCTCTTC	1 cut(s)	878
PdiI	GCCGGC	1 cut(s)	2125
PdmI	GAANNNNTTC	4 cut(s)	239, 479, 1076, 1874
Pfl23II	CGTACG	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	794
PfoI	TCCNGGA	1 cut(s)	2245
PkrI	GCNGC	6 cut(s)	218, 511, 684, 713, 1246, 2113
PleI	GAGTC	4 cut(s)	578, 785, 1022, 1412
PpsI	GAGTC	4 cut(s)	578, 785, 1022, 1412
Ppu21I	YACGTR	1 cut(s)	192
PscI	ACATGT	3 cut(s)	921, 1186, 1772
PshBI	ATTAAT	2 cut(s)	1086, 2178
Psp6I	CCWGG	4 cut(s)	1525, 1703, 1777, 2245
PspEI	GGTNACC	1 cut(s)	248
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	4 cut(s)	1525, 1703, 1777, 2245
PspLI	CGTACG	1 cut(s)	188
PspN4I	GGNNCC	4 cut(s)	6, 817, 1916, 1981
PspPI	GGNCC	5 cut(s)	383, 975, 1066, 1826, 2183
PspXI	VCTCGAGB	1 cut(s)	1141
PstI	CTGCAG	1 cut(s)	687
PsuI	RGATCY	2 cut(s)	4, 1629
PsyI	GACNNNGTC	1 cut(s)	794
PvuII	CAGCTG	1 cut(s)	2111
RsaI	GTAC	6 cut(s)	190, 575, 676, 689, 1133, 1687
RsaNI	GTAC	6 cut(s)	189, 574, 675, 688, 1132, 1686
RseI	CAYNNNNRTG	7 cut(s)	470, 595, 920, 1312, 1705, 1771, 1961
SapI	GCTCTTC	1 cut(s)	878
SaqAI	TTAA	6 cut(s)	179, 456, 1086, 1337, 1950, 2178
SatI	GCNGC	6 cut(s)	217, 510, 683, 712, 1245, 2112
Sau3AI	GATC	9 cut(s)	4, 150, 411, 434, 1252, 1494, 1629, 1738, 2212
Sau96I	GGNCC	5 cut(s)	383, 975, 1066, 1826, 2183
ScaI	AGTACT	1 cut(s)	689
SchI	GAGTC	4 cut(s)	578, 785, 1022, 1413
ScrFI	CCNGG	8 cut(s)	381, 903, 1482, 1527, 1705, 1779, 1862, 2247
SduI	GDGCHC	3 cut(s)	890, 1488, 2237
SfaNI	GCATC	3 cut(s)	508, 979, 2110
SfcI	CTRYAG	1 cut(s)	683
SfiI	GGCCNNNNNGGCC	1 cut(s)	828
Sfr274I	CTCGAG	1 cut(s)	1141
SinI	GGWCC	4 cut(s)	383, 975, 1066, 2183
SlaI	CTCGAG	1 cut(s)	1141
SmiMI	CAYNNNNRTG	7 cut(s)	470, 595, 920, 1312, 1705, 1771, 1961
SmlI	CTYRAG	1 cut(s)	1141
SmoI	CTYRAG	1 cut(s)	1141
SphI	GCATGC	2 cut(s)	499, 711
Sse9I	AATT	9 cut(s)	44, 123, 344, 427, 536, 1087, 1610, 1928, 2040
SseBI	AGGCCT	1 cut(s)	204
SsiI	CCGC	6 cut(s)	11, 174, 253, 487, 801, 1242
SspI	AATATT	1 cut(s)	57
SspMI	CTAG	6 cut(s)	200, 678, 873, 1683, 1940, 2088
StuI	AGGCCT	1 cut(s)	204
StyD4I	CCNGG	8 cut(s)	379, 901, 1480, 1525, 1703, 1777, 1860, 2245
StyI	CCWWGG	4 cut(s)	832, 1201, 1394, 1766
TaaI	ACNGT	9 cut(s)	145, 868, 1106, 1112, 1278, 1311, 1723, 2035, 2174
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	4 cut(s)	1026, 1080, 1142, 2065
TaqII	GACCGA	1 cut(s)	51
TasI	AATT	9 cut(s)	44, 123, 344, 427, 536, 1087, 1610, 1928, 2040
TatI	WGTACW	2 cut(s)	687, 1131
Tru1I	TTAA	6 cut(s)	179, 456, 1086, 1337, 1950, 2178
Tru9I	TTAA	6 cut(s)	179, 456, 1086, 1337, 1950, 2178
TscAI	CASTG	5 cut(s)	1039, 1316, 1677, 1726, 2215
TseFI	GTSAC	5 cut(s)	796, 1546, 1578, 1601, 1616
TseI	GCWGC	6 cut(s)	216, 509, 682, 711, 1244, 2111
Tsp45I	GTSAC	5 cut(s)	796, 1546, 1578, 1601, 1616
TspDTI	ATGAA	8 cut(s)	632, 660, 904, 931, 932, 1298, 1640, 1883
TspGWI	ACGGA	3 cut(s)	376, 784, 2211
TspRI	CASTG	5 cut(s)	1039, 1316, 1677, 1726, 2215
Tth111I	GACNNNGTC	1 cut(s)	794
VpaK11BI	GGWCC	4 cut(s)	383, 975, 1066, 2183
VspI	ATTAAT	2 cut(s)	1086, 2178
XapI	RAATTY	3 cut(s)	427, 1928, 2040
XceI	RCATGY	9 cut(s)	407, 499, 711, 925, 1190, 1477, 1579, 1776, 1966
XcmI	CCANNNNNNNNNTGG	1 cut(s)	597
XhoI	CTCGAG	1 cut(s)	1141
XmnI	GAANNNNTTC	4 cut(s)	239, 479, 1076, 1874
XspI	CTAG	6 cut(s)	200, 678, 873, 1683, 1940, 2088
ZrmI	AGTACT	1 cut(s)	689
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.