Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8455339.1

Orthogroup ID

OG0000850

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1384

Gene Structure 1384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8455339.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1064 bp

atgaacagagacatctgggatatgtggaaaaagacttctaccgcagcgaaagatcagcttggggacatccacacacggttgatgaagaagaactacgaggcagtcccacagtggtggtttcacatcatgcttgttttaatggttggcctttccatctgggtctgtgaaggttttgggaaacagctccaacttccatggtggggagtcttactggcttgtgccattgcactaactttcaccttacccattggcattattcaagccacaacaaacatgcaaccggggctcaatgtgatcacagagttggttattgggtatctttatcctgggaagcctcttgccaatgtgactttcaaaacatatggctatatcagcatgtcacaagcactcatgtttctcggtgacttcaaattaggtcactatatgaagatccctcccaagtccatgtttattgcgcagttagctggaacactggtcgcttctagtacctttttcagcacatcctggtggcttctcaacactgttgagaacatctgtgatccatcaaaactgccagagggaagtccatggacatgtcctggtgatgaggtcttctataatgcctcaatcatttggggagttataggccctctcagaatgttcactaagcatggaaactacccggagatgaactggttcttcctacttggtttacttgcacctataccagtttggctcctatcgcgcaaattccccaagctagagtggattaagctcataaacatgcctatcatcattggaaccacagcagtcatgccaccagctaaagctgtccactacttgatgtggttcacagtcggaattttctttagcttctatgtttatcgacaacacagggcatggtgggctaggcataactatatcctatcagctgctttggatgccggcgtggccttcacggcagttcttgtgtatttcacccttcagagtaacggtattaatggtccaaaatggtggggtcaggacagcactgatcattgtccgttggccaagtgccccacagctccaggagtagtggtcaaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

355

Amino Acids

40.2

Weight (kDa)

9.18

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26590 AT5G55930
fragaria_vesca	FvH4_3g42570 FvH4_3g42651 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660
malus_domestica	MD03G1029800.v1.1 MD03G1029900.v1.1 MD03G1030000.v1.1 MD07G1217200.v1.1 MD11G1034800.v1.1 MD11G1035000.v1.1 MD11G1035100.v1.1
prunus_persica	Prupe.6G026000_v2.0.a1 Prupe.6G026100_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026300_v2.0.a1
pyrus_communis	pycom03g02480 pycom03g02500 pycom11g02890 pycom11g02900
rosa_chinensis	RchiOBHm_Chr5g0076291 RchiOBHm_Chr5g0076301 RchiOBHm_Chr5g0076311 RchiOBHm_Chr5g0076621 RchiOBHm_Chr5g0076671
rosa_laevigata	RLG00000036614 RLG00000036615 RLG00000036616 RLG00000036617
rosa_multiflora	Rmu_co8320621.1_g000001 Rmu_co8419599.1_g000001 Rmu_co8455339.1_g000001 Rmu_sc0005961.1_g000002 Rmu_sc0005961.1_g000003 Rmu_sc0013948.1_g000002 Rmu_sc0035770.1_g000001 Rmu_sc0040547.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005490 Rroxscaffold_1G00005550 Rroxscaffold_1G00005560 Rroxscaffold_1G00005570
rosa_rugosa	Rorug05G0446700.1 Rorug05G0447000 Rorug05G0447100 Rorug05G0447200 Rorug05G0447200 Rorug05G0447300
rosa_samantha	Rh5AG501900 Rh5AG502000 Rh5AG502100 Rh5BG523700 Rh5BG523800 Rh5BG523900 Rh5CG547400 Rh5CG547500 Rh5CG547600 Rh5DG535900 Rh5DG536000 Rh5DG536100 Rh7AG436800
rosa_wichuraiana	Rw0G015040 Rw0G015060 Rw5G046590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	456
AccII	CGCG	1 cut(s)	724
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	2 cut(s)	424, 533
AcoI	YGGCCR	1 cut(s)	1026
AcsI	RAATTY	2 cut(s)	728, 840
AcuI	CTGAAG	1 cut(s)	947
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	572
AgsI	TTSAA	3 cut(s)	260, 355, 409
AjnI	CCWGG	4 cut(s)	325, 503, 577, 1045
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AleI	CACNNNNGTG	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	3
AlwI	GGATC	2 cut(s)	424, 533
AoxI	GGCC	4 cut(s)	145, 625, 930, 1026
ApeKI	GCWGC	2 cut(s)	44, 911
ApoI	RAATTY	2 cut(s)	728, 840
AseI	ATTAAT	1 cut(s)	978
Asp700I	GAANNNNTTC	1 cut(s)	674
AspLEI	GCGC	2 cut(s)	457, 726
AspS9I	GGNCC	2 cut(s)	626, 983
AsuC2I	CCSGG	2 cut(s)	282, 662
AsuHPI	GGTGA	4 cut(s)	229, 413, 593, 949
AvaII	GGWCC	1 cut(s)	983
BaeGI	GKGCMC	1 cut(s)	1037
BalI	TGGCCA	1 cut(s)	1028
BanII	GRGCYC	1 cut(s)	288
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
BbsI	GAAGAC	1 cut(s)	583
BbvI	GCAGC	2 cut(s)	56, 898
BccI	CCATC	2 cut(s)	161, 550
BceAI	ACGGC	1 cut(s)	954
BciT130I	CCWGG	4 cut(s)	327, 505, 579, 1047
BclI	TGATCA	2 cut(s)	294, 1012
BcnI	CCSGG	2 cut(s)	282, 662
BcoDI	GTCTC	1 cut(s)	3
BfaI	CTAG	3 cut(s)	483, 740, 888
BglI	GCCNNNNNGGC	2 cut(s)	929, 938
BisI	GCNGC	2 cut(s)	45, 912
BlsI	GCNGC	2 cut(s)	46, 913
Bme1390I	CCNGG	6 cut(s)	282, 327, 505, 579, 662, 1047
Bme18I	GGWCC	1 cut(s)	983
BmgT120I	GGNCC	2 cut(s)	626, 983
BmiI	GGNNCC	2 cut(s)	716, 781
BmrFI	CCNGG	6 cut(s)	282, 327, 505, 579, 662, 1047
BmsI	GCATC	1 cut(s)	910
BpiI	GAAGAC	1 cut(s)	583
BpmI	CTGGAG	1 cut(s)	1029
BpuMI	CCSGG	2 cut(s)	282, 662
BsaJI	CCNNGG	4 cut(s)	194, 281, 326, 566
BsaXI	ACNNNNNCTCC	1 cut(s)	1041
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse118I	RCCGGY	1 cut(s)	923
Bse1I	ACTGG	4 cut(s)	216, 477, 677, 707
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	4 cut(s)	327, 505, 579, 1047
BseDI	CCNNGG	4 cut(s)	194, 281, 326, 566
BseGI	GGATG	3 cut(s)	66, 500, 925
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	646
BseNI	ACTGG	4 cut(s)	216, 477, 677, 707
BseSI	GKGCMC	1 cut(s)	1037
BseXI	GCAGC	2 cut(s)	56, 898
Bsh1236I	CGCG	1 cut(s)	724
BshFI	GGCC	4 cut(s)	147, 627, 932, 1028
BsiSI	CCGG	3 cut(s)	281, 662, 924
BslFI	GGGAC	2 cut(s)	77, 89
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	2 cut(s)	77, 89
BsnI	GGCC	4 cut(s)	147, 627, 932, 1028
Bsp1286I	GDGCHC	2 cut(s)	288, 1037
Bsp143I	GATC	5 cut(s)	52, 294, 429, 538, 1012
Bsp19I	CCATGG	2 cut(s)	194, 566
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	4 cut(s)	147, 627, 932, 1028
BspCNI	CTCAG	1 cut(s)	645
BspFNI	CGCG	1 cut(s)	724
BspLI	GGNNCC	2 cut(s)	716, 781
BspPI	GGATC	2 cut(s)	424, 533
BsrDI	GCAATG	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	923
BsrI	ACTGG	4 cut(s)	216, 477, 677, 707
BssAI	RCCGGY	1 cut(s)	923
BssECI	CCNNGG	4 cut(s)	194, 281, 326, 566
BssMI	GATC	5 cut(s)	52, 294, 429, 538, 1012
BssT1I	CCWWGG	2 cut(s)	194, 566
Bst2UI	CCWGG	4 cut(s)	327, 505, 579, 1047
Bst4CI	ACNGT	5 cut(s)	78, 111, 523, 835, 974
BstC8I	GCNNGC	1 cut(s)	925
BstDEI	CTNAG	2 cut(s)	632, 645
BstDSI	CCRYGG	2 cut(s)	194, 566
BstF5I	GGATG	3 cut(s)	66, 500, 925
BstFNI	CGCG	1 cut(s)	724
BstHHI	GCGC	2 cut(s)	457, 726
BstKTI	GATC	5 cut(s)	55, 297, 432, 541, 1015
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	5 cut(s)	52, 294, 429, 538, 1012
BstMWI	GCNNNNNNNGC	8 cut(s)	283, 372, 461, 721, 884, 920, 929, 938
BstNI	CCWGG	4 cut(s)	327, 505, 579, 1047
BstNSI	RCATGY	4 cut(s)	277, 379, 576, 766
BstSCI	CCNGG	6 cut(s)	280, 325, 503, 577, 660, 1045
BstSLI	GKGCMC	1 cut(s)	1037
BstUI	CGCG	1 cut(s)	724
BstV1I	GCAGC	2 cut(s)	56, 898
BstV2I	GAAGAC	1 cut(s)	583
BstX2I	RGATCY	1 cut(s)	429
BstXI	CCANNNNNNTGG	2 cut(s)	114, 993
BstYI	RGATCY	1 cut(s)	429
BsuRI	GGCC	4 cut(s)	147, 627, 932, 1028
BtgI	CCRYGG	2 cut(s)	194, 566
BtsCI	GGATG	3 cut(s)	66, 500, 925
BtsIMutI	CAGTG	4 cut(s)	116, 470, 519, 1008
Cac8I	GCNNGC	1 cut(s)	925
CfoI	GCGC	2 cut(s)	457, 726
Cfr10I	RCCGGY	1 cut(s)	923
Cfr13I	GGNCC	2 cut(s)	626, 983
Csp6I	GTAC	1 cut(s)	486
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	2 cut(s)	632, 645
DpnI	GATC	5 cut(s)	54, 296, 431, 540, 1014
DpnII	GATC	5 cut(s)	52, 294, 429, 538, 1012
EaeI	YGGCCR	1 cut(s)	1026
Eco130I	CCWWGG	2 cut(s)	194, 566
Eco24I	GRGCYC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	983
Eco57I	CTGAAG	1 cut(s)	947
EcoO109I	RGGNCCY	1 cut(s)	626
EcoRII	CCWGG	4 cut(s)	325, 503, 577, 1045
EcoT14I	CCWWGG	2 cut(s)	194, 566
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	2 cut(s)	194, 566
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FaqI	GGGAC	2 cut(s)	77, 89
FauNDI	CATATG	1 cut(s)	361
FbaI	TGATCA	2 cut(s)	294, 1012
Fnu4HI	GCNGC	2 cut(s)	45, 912
FokI	GGATG	3 cut(s)	53, 487, 932
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	45, 912
FspBI	CTAG	3 cut(s)	483, 740, 888
FspI	TGCGCA	1 cut(s)	456
GlaI	GCGC	2 cut(s)	456, 725
GluI	GCNGC	2 cut(s)	45, 912
GsuI	CTGGAG	1 cut(s)	1029
HaeIII	GGCC	4 cut(s)	147, 627, 932, 1028
HapII	CCGG	3 cut(s)	281, 662, 924
HhaI	GCGC	2 cut(s)	457, 726
Hin6I	GCGC	2 cut(s)	455, 724
HinP1I	GCGC	2 cut(s)	455, 724
HinfI	GANTC	1 cut(s)	204
HpaII	CCGG	3 cut(s)	281, 662, 924
HphI	GGTGA	4 cut(s)	229, 413, 593, 949
Hpy166II	GTNNAC	4 cut(s)	642, 692, 814, 831
Hpy188I	TCNGA	3 cut(s)	635, 839, 966
Hpy188III	TCNNGA	1 cut(s)	1001
Hpy8I	GTNNAC	4 cut(s)	642, 692, 814, 831
HpyAV	CCTTC	3 cut(s)	161, 943, 971
HpyCH4III	ACNGT	5 cut(s)	78, 111, 523, 835, 974
HpyCH4V	TGCA	3 cut(s)	227, 277, 698
HpyF10VI	GCNNNNNNNGC	8 cut(s)	283, 372, 461, 721, 884, 920, 929, 938
HpyF3I	CTNAG	2 cut(s)	632, 645
HspAI	GCGC	2 cut(s)	455, 724
KroI	GCCGGC	1 cut(s)	923
KroNI	GCCGGC	1 cut(s)	925
Ksp22I	TGATCA	2 cut(s)	294, 1012
Kzo9I	GATC	5 cut(s)	52, 294, 429, 538, 1012
LmnI	GCTCC	3 cut(s)	189, 720, 1048
Lsp1109I	GCAGC	2 cut(s)	56, 898
LweI	GCATC	1 cut(s)	910
MaeI	CTAG	3 cut(s)	483, 740, 888
MaeIII	GTNAC	5 cut(s)	346, 378, 401, 416, 968
MalI	GATC	5 cut(s)	54, 296, 431, 540, 1014
MboI	GATC	5 cut(s)	52, 294, 429, 538, 1012
MboII	GAAGA	5 cut(s)	97, 100, 439, 583, 670
MflI	RGATCY	1 cut(s)	429
MhlI	GDGCHC	2 cut(s)	288, 1037
MlsI	TGGCCA	1 cut(s)	1028
MluCI	AATT	3 cut(s)	410, 728, 840
MluNI	TGGCCA	1 cut(s)	1028
MlyI	GAGTC	1 cut(s)	213
MmeI	TCCRAC	2 cut(s)	211, 817
MnlI	CCTC	7 cut(s)	91, 345, 444, 550, 580, 613, 639
Mox20I	TGGCCA	1 cut(s)	1028
MroNI	GCCGGC	1 cut(s)	923
MroXI	GAANNNNTTC	1 cut(s)	674
MscI	TGGCCA	1 cut(s)	1028
MseI	TTAA	3 cut(s)	137, 750, 978
MslI	CAYNNNNRTG	4 cut(s)	112, 505, 571, 761
Msp20I	TGGCCA	1 cut(s)	1028
MspA1I	CMGCKG	1 cut(s)	911
MspI	CCGG	3 cut(s)	281, 662, 924
MspR9I	CCNGG	6 cut(s)	282, 327, 505, 579, 662, 1047
MvaI	CCWGG	4 cut(s)	327, 505, 579, 1047
MvnI	CGCG	1 cut(s)	724
MwoI	GCNNNNNNNGC	8 cut(s)	283, 372, 461, 721, 884, 920, 929, 938
NaeI	GCCGGC	1 cut(s)	925
NciI	CCSGG	2 cut(s)	282, 662
NcoI	CCATGG	2 cut(s)	194, 566
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	5 cut(s)	52, 294, 429, 538, 1012
NgoMIV	GCCGGC	1 cut(s)	923
NlaIV	GGNNCC	2 cut(s)	716, 781
NmuCI	GTSAC	4 cut(s)	346, 378, 401, 416
NsbI	TGCGCA	1 cut(s)	456
NspI	RCATGY	4 cut(s)	277, 379, 576, 766
OliI	CACNNNNGTG	1 cut(s)	112
PciI	ACATGT	1 cut(s)	572
PdiI	GCCGGC	1 cut(s)	925
PdmI	GAANNNNTTC	1 cut(s)	674
PfoI	TCCNGGA	1 cut(s)	1045
PkrI	GCNGC	2 cut(s)	46, 913
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PscI	ACATGT	1 cut(s)	572
PshBI	ATTAAT	1 cut(s)	978
Psp6I	CCWGG	4 cut(s)	325, 503, 577, 1045
PspGI	CCWGG	4 cut(s)	325, 503, 577, 1045
PspN4I	GGNNCC	2 cut(s)	716, 781
PspPI	GGNCC	2 cut(s)	626, 983
PsuI	RGATCY	1 cut(s)	429
PvuII	CAGCTG	1 cut(s)	911
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
RseI	CAYNNNNRTG	4 cut(s)	112, 505, 571, 761
SaqAI	TTAA	3 cut(s)	137, 750, 978
SatI	GCNGC	2 cut(s)	45, 912
Sau3AI	GATC	5 cut(s)	52, 294, 429, 538, 1012
Sau96I	GGNCC	2 cut(s)	626, 983
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	6 cut(s)	282, 327, 505, 579, 662, 1047
SduI	GDGCHC	2 cut(s)	288, 1037
SfaNI	GCATC	1 cut(s)	910
SinI	GGWCC	1 cut(s)	983
SmiMI	CAYNNNNRTG	4 cut(s)	112, 505, 571, 761
Sse9I	AATT	3 cut(s)	410, 728, 840
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	3 cut(s)	483, 740, 888
StyD4I	CCNGG	6 cut(s)	280, 325, 503, 577, 660, 1045
StyI	CCWWGG	2 cut(s)	194, 566
TaaI	ACNGT	5 cut(s)	78, 111, 523, 835, 974
TaqI	TCGA	1 cut(s)	865
TasI	AATT	3 cut(s)	410, 728, 840
Tru1I	TTAA	3 cut(s)	137, 750, 978
Tru9I	TTAA	3 cut(s)	137, 750, 978
TscAI	CASTG	4 cut(s)	116, 477, 526, 1015
TseFI	GTSAC	4 cut(s)	346, 378, 401, 416
TseI	GCWGC	2 cut(s)	44, 911
Tsp45I	GTSAC	4 cut(s)	346, 378, 401, 416
TspDTI	ATGAA	4 cut(s)	17, 98, 440, 683
TspGWI	ACGGA	1 cut(s)	1011
TspRI	CASTG	4 cut(s)	116, 477, 526, 1015
VpaK11BI	GGWCC	1 cut(s)	983
VspI	ATTAAT	1 cut(s)	978
XapI	RAATTY	2 cut(s)	728, 840
XceI	RCATGY	4 cut(s)	277, 379, 576, 766
XmnI	GAANNNNTTC	1 cut(s)	674
XspI	CTAG	3 cut(s)	483, 740, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.